LOC103027482


Basic Information

Item Value
gene id LOC103027482
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15890205 ~ 15892830 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245999.2
GTGATTGGTGGAAGCAGGTTGAAGGTGTGACTGGAGTGAAGACAGTGAATCAGAAGGTTCACAGTTTGTGCTGCTGAGGAAAGACTCAAGCAAATGGAGCCTGAAGGTCCACCAGCGTACGATGAGATAGGAAAGCATTTCCCTCCTGAACATGAAGGTCTGAATGTTCCTGTACTGATCCTGGTGCTGCTGGGCAGGAGGAATGTTGGGAAGACCGTGACAGGGAATACCATCCTTGGCAGTAAGAAGTTTGAGACTGGGGTGAAGACGACTCGGACAGTGAAGAAGCTGGGCTGGGTGGATGGAGTGAGGGTGGCAGTGGTGGACACCCCTGGCTGGAGTGTGTTCGGTTTAGTCAGTGCAGAGCAGGTGAGGGGTGAGCTCCTCCGCAGTGACATGCTGAGCTCCTTTGGTCGCCGGACCTTCCTGCTGGTCATCCCGGTGGACGAGTTCAGCAGCAGAGAGTGtcaggctgtggaggagaacCTGAGGATCCTGGGATCTGATGTGTGGAAGCACACCATGGTGCTCTTCTCTTATGGTGATGAGCTGAGAGGAAGAAGCATTGAAGAGCATATTAAAAAGAGTGGGAGGTCTCTGCAGAAGATTCTGCATATGTGTGACTACAGATACCATGTCTTTAACAATAAACTGACTGACAGCTACTACCAGGTCAGTCAGCTGATTCAGACTGTGAGGAAAATGTGATTGTAGAAAGCTGGAGAGGGTGAAGTAAACATAAGGGGCATTCGAATACTCAATAGAGGAAAGATTATTTGTACTGGAACAATGTATTATTAAGGCTTATTTGCACACTACAgtagtttattctgctttaaaaTGTTGTATTATAAGATTATATTAACACCTTAAAAAGGCCAGagtttttgtcaattttctgcctgacattacaccactaagtCTTGAGGATGTcaattcaagcattacataaaaagctttaatttttgataaggaacattactgaaaatcgttactgtaattgtaatagaaagtataaaaaatattaaagtaaatctgca

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245999.2 True 1040 mRNA 0.45 2 15890205 15892830

Neighbor

gene id symbol gene type direction distance location
LOC111192347 NA coding upstream 115253 15731479 ~ 15774952 (+)
LOC103028185 NA coding upstream 128144 15733287 ~ 15762061 (+)
LOC103029544 NA coding upstream 160894 15709480 ~ 15729311 (+)
LOC103023867 msi2b,msi2,LOC108425902,LOC107587484,LOC107682662,LOC108277875,LOC108435815,LOC105028669,LOC106603292 coding upstream 272418 15211657 ~ 15617787 (+)
akap1 akap1b,akap1 coding upstream 703810 15167460 ~ 15186395 (+)
LOC103026903 aldh3a2a,LOC108425811,LOC107586255,LOC107729125,LOC107662794,LOC108277491 coding downstream 41678 15934508 ~ 15940392 (+)
LOC103027191 LOC108425812,LOC108277490 coding downstream 52898 15945728 ~ 15952683 (+)
LOC103025893 tpst1,LOC108425813,LOC108277496,LOC107662793,LOC107657564 coding downstream 114835 16007665 ~ 16069129 (+)
timm50 timm50,LOC107586258,LOC107729126,LOC107728222,LOC107662791 coding downstream 266928 16159758 ~ 16192568 (+)
dll3 NA coding downstream 313067 16205897 ~ 16211505 (+)
G3917 NA non-coding upstream 1838 15886114 ~ 15888367 (+)
G3894 NA non-coding upstream 117701 15763244 ~ 15772504 (+)
LOC111192856 NA non-coding upstream 225857 15660210 ~ 15664348 (+)
LOC111192011 NA non-coding upstream 234884 15639346 ~ 15655321 (+)
G3808 NA non-coding upstream 271034 15617118 ~ 15619171 (+)
G4120 NA non-coding downstream 263682 16156512 ~ 16157533 (+)
G4158 supt5h,LOC107586261 non-coding downstream 400681 16293511 ~ 16310645 (+)
G4164 NA non-coding downstream 419111 16311941 ~ 16312669 (+)
G4167 NA non-coding downstream 421282 16314112 ~ 16314937 (+)
LOC111192356 NA non-coding downstream 456777 16349607 ~ 16350551 (+)
LOC103040601 NA other upstream 64102 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 727249 15072840 ~ 15162956 (+)
G3790 NA other upstream 851291 15038555 ~ 15038914 (+)
G3736 NA other upstream 926622 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 1044579 14840293 ~ 14845626 (+)
G4221 NA other downstream 650112 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 726216 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 2117348 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 2148459 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 2179134 18071964 ~ 18073663 (+)

Expression


Co-expression Network