parl (parl,LOC107670111,LOC107689587)


Basic Information

Item Value
gene id parl
gene name parl,LOC107670111,LOC107689587
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22036488 ~ 22046978 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247639.3
cccaGAAACAATAAGAGTCTCAAACCCACTTCATAATAAGAGTCTCAGTTTTATTATGCAAGTGATTCGCCTGCAGTGTGcatacttttattatgaaggTTATCCCCATTAGTTCacagacttttattatgaaagtTATCTCCTTGCAGTGTGAAATTGGCAGTGTGAAGGGGCAGATTATGGCGTGGATGAGCAGAGCGGGCAGTTGGGCAGTGTGGAGCGGGGCAACAGGGGCAGTTCTCCATCAACCCGGAGCACACAGAggATTTCTCCTTCCCCATCAGCAGAGATGTGGCTTCCGAAAGGCTTTGAAAAAGGTGGAGCCAAAGAAGGAGGCGGAGCAGGCTGAACTGGTGCAAAAGAAAGACATGGCTCCACAGGTTGAACCTCCCACCCCGCACCAGCCCGACAGGTCATTCGGCCGACTGGTGAAGCCGCTGGTGTTCACAGTGGGGTTTACAGGTTGTTCGTTTGGAGGGGCAGCAATCTGGCAGTACGAAAGTCTGAAGTCTCGTGTTCAGAGCTATTTTGACGAGGTGCGAACTGACTGGCTGGATAAGCTGCGGCCACAGAAACACGGAGATTTCCGCaaagagATTAATCAGTGGTGGAACAGTCTGAGTGAAGGCCAGAAATACGTTACGGGGATCATAGCGACCAATGTTCTAGTGTTTTGTTGTTGGCGAGTCCCGTCTCTTCAGCGTTCCATGTTAAAATACTTCACTTCTAACCCCGCCTCCAaaaCTCTGTGCTGGCCAATGCTGCTGTCTACCTTCAGTCATTACTCTCTGTTCCACATGGCCGCCAACATGTACGTCCTGTGGAGCTTCTCGTCCAGTATCGTCAACATTATGGGCAAAGAGCAGTTCCTCGCTATGTACCTGTCAGcaggGGTTATCTCCTCGTTTGTCAGTTATGTGTGTAAAACAGCCACAGGCCGGCTGGGACCATCACTGGGcgcaTCTGGGGCTATAATGACCGTCCTGGCGGCCGTGTGCACGAAGATGCCCGAAGCGAAACTTGCAATCATCTTCCTCCCCATGTACACCTTCACTGCTGGGAAtGCACTGAAAGTCATCGTTGCCATGGATACGGCTGGCCTAATTATGGGATGGCGTTTTTTTGACCATGCTGCACATTTAGGAGGAGCTCTGTTTGGCATatggtATGTCCTGTACGGTCATGAGCTGATCTGGAAGAACAGAGAGCCACTAGTGAAGATGTGGCATAACCTCAGGACCCGAGGCTCTGGAGGAAACGGCTCACTCTAGAGGATCAGGAGAGAAcaacaggacagacagacagcagtaAGAGAGCAGACAGTTAGACCACCATCAttctttatgtctctctcttacacacacacacacatacacacagaaaaaaacccACTCAGGTTAACTTTTAATTAACGCCCAACTGAATCTTTTTCTGTAGCTGCTGTTGCATGGTTAGAGGAGCTTTACAACAGTTTTATTAAAGCTTCTCCAACAGTTCCTAAAAACATGTTAGTGGAAGGAGTTTGGATAGTTCATCCACTCAGAGCAGTGAACCCGGGGTAATTTTTAGATCTCAAAACAAACCTCTAAATGAGCGGCATGAGGTCCAGCAGGGTGATCTGGCTCCAGATGTGCAGGCCGCAACACTCAGAACCTGTCATTTTCTgtactatttgtttttttgttggacaatgaataaaatgtttatttaaggtcaGAAAA
>XM_007247640.3
cccaGAAACAATAAGAGTCTCAAACCCACTTCATAATAAGAGTCTCAGTTTTATTATGCAAGTGATTCGCCTGCAGTGTGcatacttttattatgaaggTTATCCCCATTAGTTCacagacttttattatgaaagtTATCTCCTTGCAGTGTGAAATTGGCAGTGTGAAGGGGCAGATTATGGCGTGGATGAGCAGAGCGGGCAGTTGGGCAGTGTGGAGCGGGGCAACAGGGGCAGTTCTCCATCAACCCGGAGCACACAGAggATTTCTCCTTCCCCATCAGCAGAGATGTGGCTTCCGAAAGGCTTTGAAAAAGGTGGAGCCAAAGAAGGAGGCGGAGCAGGCTGAACTGGTGCAAAAGAAAGACATGGCTCCACAGGTTGAACCTCCCACCCCGCACCAGCCCGACAGGTCATTCGGCCGACTGGTGAAGCCGCTGGTGTTCACAGTGGGGTTTACAGGTTGTTCGTTTGGAGGGGCAGCAATCTGGCAGTACGAAAGTCTGAAGTCTCGTGTTCAGAGCTATTTTGACGAGGTGCGAACTGACTGGCTGGATAAGCTGCGGCCACAGAAACACGGAGATTTCCGCaaagagATTAATCAGTGGTGGAACAGTCTGAGTGAAGGCCAGAAATACGTTACGGGGATCATAGCGACCAATGTTCTAGTGTTTTGTTGTTGGCGAGTCCCGTCTCTTCAGCGTTCCATGTTAAAATACTTCACTTCTAACCCCGCCTCCAaaaCTCTGTGCTGGCCAATGCTGCTGTCTACCTTCAGTCATTACTCTCTGTTCCACATGGCCGCCAACATGTACGTCCTGTGGAGCTTCTCGTCCAGTATCGTCAACATTATGGGCAAAGAGCAGTTCCTCGCTATGTACCTGTCAGcaggGGTTATCTCCTCGTTTGTCAGTTATGTGTGTAAAACAGCCACAGGCCGGCTGGGACCATCACTGGGcgcaTCTGGGGCTATAATGACCGTCCTGGCGGCCGTGTGCACGAAGATGCCCGAAGCGAAACTTGCAATCATCTTCCTCCCCATGTACACCTTCACTGCTGGGAAtGCACTGAAAGTCATCGTTGCCATGGATACGGCTGGCCTAATTATGGGATGGCGTTTTTTTGACCATGCTGCACATTTAGGAGGAGCTCTGTTTGGCATatggtATGTCCTGTACGGTCATGAGCTGATCTGGAAGAACAGAGAGCCACTAGTGAAGATGTGGCATAACCTCAGGACCCGAGGCTCTGGAGGAAACGGCTCACTCTAGAGGATCAGGAGAGAAcaacaggacagacagacagcaGACACGGCTACATCAGCTCCCCTTCCTCTTCTCCATTCAGTCAcccagtaacagcgtccagTCAGACTTTCCACACTCAGAACCTGCTGCAAACGATTAAATCTGTCTGGATGATCCGGATATGGCTGATGTTCTTCCTCCCACTTCACCTTTCTGTTCCCGTCACACAGAGAAAGGAGTGTGTGTACCGTATTTGGGTCCAGATTGAACTCACAGGCatcttgtacacacacacacacacacacagaacaaacaATCACTGATTAAAATTGTTAATGCCAAGAGTATATTTTCTACActgaacaaatatatatacgaaacactt
>XM_022669700.1
CTCTAAactcagttgtgtgtgtgtgtgtgtgtgtgttgtatctGCAGGTGCGGATGTTCAGGCCTGTGGGTCAAGCTCAAAACTACACTTGCAAAAGGGTCAACAACGGCAGCCCAACATCAGAATAAATGGAAATGTGAAATTGGCAGTGTGAAGGGGCAGATTATGGCGTGGATGAGCAGAGCGGGCAGTTGGGCAGTGTGGAGCGGGGCAACAGGGGCAGTTCTCCATCAACCCGGAGCACACAGAggATTTCTCCTTCCCCATCAGCAGAGATGTGGCTTCCGAAAGGCTTTGAAAAAGGTGGAGCCAAAGAAGGAGGCGGAGCAGGCTGAACTGGTGCAAAAGAAAGACATGGCTCCACAGGTTGAACCTCCCACCCCGCACCAGCCCGACAGGTCATTCGGCCGACTGGTGAAGCCGCTGGTGTTCACAGTGGGGTTTACAGGTTGTTCGTTTGGAGGGGCAGCAATCTGGCAGTACGAAAGTCTGAAGTCTCGTGTTCAGAGCTATTTTGACGAGGTGCGAACTGACTGGCTGGATAAGCTGCGGCCACAGAAACACGGAGATTTCCGCaaagagATTAATCAGTGGTGGAACAGTCTGAGTGAAGGCCAGAAATACGTTACGGGGATCATAGCGACCAATGTTCTAGTGTTTTGTTGTTGGCGAGTCCCGTCTCTTCAGCGTTCCATGTTAAAATACTTCACTTCTAACCCCGCCTCCAaaaCTCTGTGCTGGCCAATGCTGCTGTCTACCTTCAGTCATTACTCTCTGTTCCACATGGCCGCCAACATGTACGTCCTGTGGAGCTTCTCGTCCAGTATCGTCAACATTATGGGCAAAGAGCAGTTCCTCGCTATGTACCTGTCAGcaggGGTTATCTCCTCGTTTGTCAGTTATGTGTGTAAAACAGCCACAGGCCGGCTGGGACCATCACTGGGcgcaTCTGGGGCTATAATGACCGTCCTGGCGGCCGTGTGCACGAAGATGCCCGAAGCGAAACTTGCAATCATCTTCCTCCCCATGTACACCTTCACTGCTGGGAAtGCACTGAAAGTCATCGTTGCCATGGATACGGCTGGCCTAATTATGGGATGGCGTTTTTTTGACCATGCTGCACATTTAGGAGGAGCTCTGTTTGGCATatggtATGTCCTGTACGGTCATGAGCTGATCTGGAAGAACAGAGAGCCACTAGTGAAGATGTGGCATAACCTCAGGACCCGAGGCTCTGGAGGAAACGGCTCACTCTAGAGGATCAGGAGAGAAcaacaggacagacagacagcagtaAGAGAGCAGACAGTTAGACCACCATCAttctttatgtctctctcttacacacacacacacatacacacagaaaaaaacccACTCAGGTTAACTTTTAATTAACGCCCAACTGAATCTTTTTCTGTAGCTGCTGTTGCATGGTTAGAGGAGCTTTACAACAGTTTTATTAAAGCTTCTCCAACAGTTCCTAAAAACATGTTAGTGGAAGGAGTTTGGATAGTTCATCCACTCAGAGCAGTGAACCCGGGGTAATTTTTAGATCTCAAAACAAACCTCTAAATGAGCGGCATGAGGTCCAGCAGGGTGATCTGGCTCCAGATGTGCAGGCCGCAACACTCAGAACCTGTCATTTTCTgtactatttgtttttttgttggacaatgaataaaatgtttatttaaggtcaGAAAA

Function

symbol description
parl Enables endopeptidase activity. Involved in several processes, including membrane protein proteolysis; regulation of protein targeting to mitochondrion; and regulation of reactive oxygen species metabolic process. Located in mitochondrion. Implicated in Leber hereditary optic neuropathy; coronary artery disease; hyperinsulinism; myopia; and type 2 diabetes mellitus. Biomarker of breast carcinoma and type 2 diabetes mellitus.

NR:

description
PREDICTED: presenilins-associated rhomboid-like protein, mitochondrial

GO: NA

KEGG:

id description
K09650 PARL, PSARL, PCP1; rhomboid-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247639.3 True 1721 mRNA 0.48 9 22037862 22044566
XM_007247640.3 False 1632 mRNA 0.49 10 22036488 22044566
XM_022669700.1 False 1707 mRNA 0.49 10 22037862 22046978

Neighbor

gene id symbol gene type direction distance location
stard10 stard10,LOC108278271,LOC106581404 coding downstream 218541 21776231 ~ 21817947 (-)
arap1 arap1 coding downstream 269898 21655023 ~ 21766590 (-)
pde2a pde2a coding downstream 420836 21282296 ~ 21615652 (-)
LOC103031705 NA coding downstream 1068400 20954003 ~ 20968088 (-)
chrd chrd,LOC107681909,LOC107709376 coding downstream 1101277 20922345 ~ 20935211 (-)
LOC111192513 NA coding upstream 81956 22128934 ~ 22130477 (-)
fzd4 fzd4,LOC107600811,LOC107551868 coding upstream 153779 22200757 ~ 22210913 (-)
pdgfd pdgfd coding upstream 297061 22344039 ~ 22366316 (-)
msantd4 msantd4 coding upstream 454120 22501098 ~ 22506707 (-)
gucy1a2 gucy1a2,LOC107706059,LOC107669873 coding upstream 474686 22521664 ~ 22551935 (-)
G5352 NA non-coding downstream 90216 21941517 ~ 21946272 (-)
G5346 NA non-coding downstream 144257 21889645 ~ 21892231 (-)
G5316 NA non-coding downstream 299162 21671121 ~ 21737326 (-)
G5318 NA non-coding downstream 341374 21694621 ~ 21695114 (-)
G5247 NA non-coding downstream 551882 21482112 ~ 21484606 (-)
G5393 NA non-coding upstream 53423 22100401 ~ 22105001 (-)
G5400 NA non-coding upstream 71282 22118260 ~ 22120469 (-)
G5401 NA non-coding upstream 74911 22121889 ~ 22124250 (-)
G5414 NA non-coding upstream 146039 22193017 ~ 22193934 (-)
G5537 lamtor1,LOC106581407 non-coding upstream 426502 22473480 ~ 22603357 (-)
LOC111192507 NA other downstream 75023 21946786 ~ 21961465 (-)
inppl1 inppl1,inppl1a,LOC108261207 other downstream 95682 21916366 ~ 21940806 (-)
G5095 eif4g1 other downstream 1399420 20630225 ~ 20637068 (-)
LOC111192876 NA other downstream 1543964 20486594 ~ 20492524 (-)
LOC103038464 NA other downstream 2380575 19652786 ~ 19655913 (-)
G5396 NA other upstream 84256 22131234 ~ 22200308 (-)
G5407 NA other upstream 108807 22155785 ~ 22158185 (-)
G5565 NA other upstream 560791 22607769 ~ 22628182 (-)
G5667 c2cd3 other upstream 749367 22796345 ~ 22798290 (-)
LOC103028862 dynll2a,LOC107554284,LOC103397138 other upstream 1288088 23335066 ~ 23339735 (-)

Expression


Co-expression Network