phox2a (phox2a,LOC107738288,LOC107679437)


Basic Information

Item Value
gene id phox2a
gene name phox2a,LOC107738288,LOC107679437
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 21908273 ~ 21913768 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247645.3
CCTCGCCATTGTCTCGCGCGCGCAGCCGAGTTTATTATAAGCGCGCGGCGCGAGCACAGCACAGCGGATCTCGAGCTCGCAGGCGCGCAGACCTGAGTGACGGACGGACGGGTGCAGCGCACGGGACCAAGAGCCGGTGACTGTTTGTGTGGATGTGCCGCGCGCAACCAGCAGGAGGAGGTGCAGGAGGAGACCCCACGCAGGAGATAGAGCGCGCGCGCAACAAGGTCCCGGCACAGAGGCGCGAGCCACATAAGAGTCGCGCGGAGTCTCGAGAAGCAACATCCGCGCGCAGACGCAGCGATCATGGATTACCCGTACCTGAACACCTACGACTCGTGCATGGCCGCCATGGAGGCCTCGGCCTACGCGGACTTTAGCTCGTGCAGTCAGGCCAACACCTTCCAGTACAACCCGATCCGGAGCAGCTTCGGTGCCGCCCCGGGCTGCGCGACCCTCGGCACGGCCAGCTGCGCGCTCGGGGCGCTGAGGGAGCACCAGCCCGCGCCCTACAGCGCAGTGCCCTACAAGTTCTTTTCGGATCCCTCCGGACTCAATGAGAAACGGAAGCAGCGGCGGATCCGGACCACATTCACCAGCTCGCAGCTGAAGGAGCTCGAGCGCGTATTCGCTGAAACCCACTATCCGGATATCTACACCCGCGAGGAGCTCGCGCTAAAGATTGATCTGACAGAGGCGCGAGTGCAGGTGTGGTTCCAGAACAGGCGTGCCAAGTTCCGTAAGCAGGAGCGTGCCGCCAACTCCAAAGGTGGAAACTCTGGCAGTGGTGGGAACACCAAGAAGACAGGTGAAGCTCGCTCTTCTTCAGAAGACGACGAGTCCAAAGAGTCCACCTGTAGCCCAACACCGGACAGCACGGCCTCCCTGCCCAGCTCGGGCAACATGGGCAGTCCAGGGGCAGGAAGCCTCAGCCCCAGCCCGGTTTCGGTGTCCTCGGCCGGCTTCGCCAGCACTTCCACCTCACCGTCCGTCCACCAGGGGTTGAAGTCTCCCAGCTGGCCCGGGACAGGAGGCCTAACCTCGAGTGGCCCTCAGGGGTCTGAGCTGCTGAAGACGTGGCAGCCTGCGGACAGTATGGCTGCCGGCCCCTTTGCAGGGGTGCTCTCGTCCTTCCACAGAAAGCCAGGCGCTCTGAAGACCAACCTGTTTTAGACGTTGGCTTCTCTTCTCTAAACGTGTGGTTCCTCTTACTGTTTCTTgctgccttgctctctctttattttcacttaGAGCTGGACTCCCTTCTAATTTATTGTCATACTGGACTGGCGCTTACACTgactgtttgtgtatgtatgaatgtgtgtgtgtgtgtgttcccatTTCGTAGTTGTAAAGcttccatctatccatccatctcccAAAGTCGTTGCATACATCCTTGGACCTGCTTTCCCTTCTATTACTCCATTAGACACAATTGCATCAGCATCTGCAGAAAAGTGCTAaagaaaatacagattttttggtctaattttacttctttttttttaaattctcaAGTCACATAGGCTATTGGATATTGGCATCAGCCAAGAATTTCAAATTCCCATATTGGTGCATAACTAGTGTCTCATAAGGCTGCACACCTAAAATACACAGTTTTGTACATTATATTTTTCCAGTAACTCACTCATAAGTCCCACTAATTTCTTAACATCTACAATGAGACAGTAACTTTTTCAGAGTTAAATGCAGAACTAATACCCACAGTGTTGAGTAAACTCCTGCATTCGAACTGACTGATGAATACCTCAAGCTTTAAACAAACATCTAGagtgttaaattaaattgaacaaATGCTTACAGAATGGAATGACTGCATCTAGTCTTGAACATCTACAGTGCTGGCCTAACAAAGCACTATGTAAAGAACATCTAAAGCACTGAATTAACACATTTAGTCTTAAAAAATGCATCTGCAAACAGTTCTTTTAAACCCTGCTGCTACCGGAGAGCTACCTTTCAATTTCTACAAAGCTGAATTATCTCATATTCTTCAACATCTACATTAatgaattcacatgtaaattactaaattaacaCCTAAAACAATGTAGGACTATTGAATGACCAATTATTGTCTTGATCTCATTCCTACTACATCTACAGTGTTAACACAACTAGAAAGAACACCCACAGCACTGAATTAACACTTCTAGATTAGGATAAACATCTATAGCACTGACTGTGAGGTCAATTAATAAGTACTGTTTTTCGTTCTAACAACAATAGAGTTAAGTGGAGGTCAGCTGTACTCAAGTGACCTGAACACTTTAACAGTTAATTCAACAGCGGAACGGTGTGGTgcagttcattaaaaaaaagattataagcAGCTTTACAGTATGGCCTCAGCTTCTTGTTGTCACTCAAGACTCATTTATAAAATGACtgggataaaacataaaataaacaaagttaCACATTTCTACTTAATTAAAGAacaattgtatttatatagaaattcatatataaatatcaatTCATGATATTTACTACCACTTCTCCTTCTTTCCAAAACGAGATCCCCTTTTCAGCTATCAGTGTTTATCTACATACATCCCACAGTTTTAGGCCAAAAAGTGCAGAATTTCTAAAAGGACAGTTTGCAGAAAGGATTGGCGATTGTTAACAGCAAGCACAACTTCCCTTTTTCACACAAAGCCTTCctgggaaagaaagaaacaaagaaagacagaaagactgGAATCCAATTAGCACAGCAAGCAGGGAAGTTAAGGTTGGCACTGAAGGAGCAGCAAAGCAAAAATACTTTAGCATCGTGGTTAATTGTAAACAGACGATATTAGCATGCTGCTGTTTAGCATAATGCTAATAGGCGGTCAATCAATTTCATTTGACATTAGAATCACtaacatttcatttcattggACTGAACTGCTGTGAAAATCCCAACTAATGCTACTTTCCACTTTACCACGTTTTACCGTATCTTCAGTAAATTGTTTCGTTTGGAAAATCTAAAGTTTTAATGACCTTTCTGAGGCTGTAAATTACATGTTTTCCCTTTTATAGTTCATTTCCTCATGTGTAACCCCTCCATGAATGCGTGAATGTGTAAGCAGAGTAAAGCCATtagcattaatttatttaaaggaaaaaaagggagaaagtttttgttttctgtttttcagtcAGGCTGAAATATTGTAACATGAAACTATTttgtatatagtaatataaataCTGCGTAGTTTCTGACTTTTATTATGGTAACGTGGCGCTAAGGTGTACTTAATTGAAATAAATTGCGGCCGTTAAGTCTGAGCTTACGACGTTaggatgtgttttcttttttcggTCGTAGGCCTAACATTCATTAATGGCACTGTGTAATACTGtacaaaataaactacatttaaagcGCT

Function

symbol description
phox2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within locus ceruleus development and noradrenergic neuron development. Predicted to be located in nucleus. Is expressed in several structures, including epibranchial field; hindbrain neural rod; midbrain hindbrain boundary neural keel; nervous system; and neural tube. Human ortholog(s) of this gene implicated in congenital fibrosis of the extraocular muscles. Orthologous to human PHOX2A (paired like homeobox 2A).

NR:

description
paired mesoderm homeobox protein 2A-like

GO: NA

KEGG:

id description
K09330 PHOX2, PMX2; paired mesoderm homeobox protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247645.3 True 3413 mRNA 0.45 3 21908273 21913768

Neighbor

gene id symbol gene type direction distance location
clpb clpb,LOC107568463,LOC108261447,LOC108276567 coding upstream 17296 21824927 ~ 21890977 (+)
LOC103042160 LOC108412514 coding upstream 647075 21248853 ~ 21261198 (+)
LOC103042479 ecel1 coding upstream 662451 21189741 ~ 21245822 (+)
LOC103030875 LOC108413394,LOC108278199 coding upstream 821537 21008121 ~ 21086736 (+)
LOC103033175 NA coding upstream 1167280 20732285 ~ 20740993 (+)
LOC103025167 NA coding downstream 118811 22032579 ~ 22037644 (+)
LOC103025996 LOC103025996,LOC108411840 coding downstream 130954 22044722 ~ 22050555 (+)
il1rap NA coding downstream 224819 22138587 ~ 22162195 (+)
LOC103022049 NA coding downstream 251631 22165399 ~ 22190308 (+)
dync2h1 dync2h1,LOC108413322,LOC107566891 coding downstream 344390 22258158 ~ 22329193 (+)
G5067 arap1,LOC107729594,LOC107557643,LOC107701599 non-coding upstream 238621 21662490 ~ 21669652 (+)
G5069 NA non-coding upstream 249527 21655037 ~ 21658746 (+)
LOC103030556 NA non-coding upstream 639110 21261735 ~ 21269163 (+)
G5036 NA non-coding upstream 748152 21087974 ~ 21160121 (+)
G5028 NA non-coding upstream 925525 20982243 ~ 20982748 (+)
G5329 NA non-coding downstream 2814 21916582 ~ 21920497 (+)
G5331 inppl1,LOC108261207,LOC107731861 non-coding downstream 9352 21923120 ~ 21924879 (+)
G5333 inppl1,inppl1a,LOC108261207,LOC107710497 non-coding downstream 18921 21932689 ~ 21939206 (+)
G5371 NA non-coding downstream 213230 22126998 ~ 22129294 (+)
G5379 NA non-coding downstream 255344 22169112 ~ 22197485 (+)
G5026 NA other upstream 909073 20983707 ~ 20999200 (+)
LOC103037169 NA other upstream 1325399 20558523 ~ 20582874 (+)
LOC107197594 NA other upstream 1356638 20549191 ~ 20551635 (+)
G4775 LOC108411134 other upstream 2742642 19160731 ~ 19165631 (+)
G4612 NA other upstream 3148415 18759375 ~ 18759858 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 142754 22056522 ~ 22154926 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other downstream 493788 22407556 ~ 22524746 (+)
LOC103041654 chordc1,LOC108412466 other downstream 728842 22642610 ~ 22673984 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other downstream 795144 22708912 ~ 22758213 (+)
G5620 LOC107694033,LOC107752375,LOC107592755,LOC105030986 other downstream 988998 22902766 ~ 22923081 (+)

Expression


Co-expression Network