LOC103041654 (chordc1,LOC108412466)


Basic Information

Item Value
gene id LOC103041654
gene name chordc1,LOC108412466
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22642610 ~ 22673984 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248582.3
aaagtgtgacgtgttaaagtattcagccccccttATATCAATACTTTGTAGAGCCAACTTTACCCTGCAACTTATAGAGACCCATTTGTCCATACTAAACAGCTCAAGATcgttatttctaatttcttatttcagtgttttcaatctattttaaactgtaaatattcggctgcactgtaaatgagggtcatcCTCAATGTaatcccgagtgaaaataatgATTGGATATTCTGGGATGTAAAATCACCTCTAATATTGTGTTGAGTATTTGTTGCATAAGGTGTAGCAGCATCCTATCAGAAGATTTTGTCTTCTGgtggaaataaattaatttgtatatttaacatttcttaatttacactgttaatCACTCTGTGAGGTCGAAACATTCCGATTTTAGCCGAATTTTAACGAACTCGGGTCTAACGCAACTTCGGAAAACGATCCGAAGTTTAAAACTGCATTCCCGACTGGAGCCGAGTGATCACGAACTGCAGCCGAAGATAGACGCTTCTCGAAGTTTCCCGAACCGTCCGCGAGTTACCGGCGTTTCTTTAGCCGgcaaaccaaacacacacagagcaagctcctgtctctctcatacacttacacatactcttactcacacacacgcgcacgcacGCGCGCAAACTATCTATCCCTCTCCGTGTTTTATCCGCtaatctgtgtttgtgtgtgttataatgtcAGAGCTGTGTTATAACCGGGGCTGCGGGCAGCGCTTCGATCCGGACAGAAACCCTGAGGatgCATGCACTTTTCATCCCGGGGTTCCAGTGTTCCACGATGCTCTGAAGGGCTGGTCCTGCTGTAAGAGACGCACAACAGACTTCTCAGATTTCCTTAACATTGCTGGCTGCACTAAGGGTTGCCATAATAAGGAAAAACCCCCAGAGCCTGTGAAGCCAGAGGTAAAGTCTTCTGGAGAGAAGAAGGAGCTGGAAGACCTGAAGCCCCGTTTTGATGAGTACATCATTCAGGCTCCAAAACCTCTGGAGTTCATCCAGAGACCCAGTGCTGAGGAGCCACTGGTGGACCTGCAGCAGAAGGTTTCACCGTCCCTTCAACAGGCACTTGAAAAACTCAAGCTAGCTGAGACAAATGCGAGCACAGAGAAAGTCGAGGATGGAAATGAAGTGAAATACGGAACGGTGTGTAAAAACAGAGGCTGCTCTAAGAAATTCTCCGGACCAAAGAGCGACGAGGAGACATGTGTGCATCACTCTGGGGTGCCCATCTTTCACGAAGgGATGAAGTACTGGAGCTGCTGTCAAAAGAAAACATCAGATTTTAACTCATTTCTGTCTCAGGAGGGCTGCAGCAAGGGCTCTCATGTGTGGAAGAATGCAGATGGGAAGAAGGTGGTGCCCTGTCGGTTTGATTGGCACCAGACTGGCGGTCAGGTGACCATCTCAATCTACGCTAAGAACTGTAACCCTGAGCTGTGTTCAGTGCAGGCCAACAGCActactgtgtgtgtgcgtgtggtgtTCGAGGTGGAGAAGGAGTTTGAGCAGAAGCTGAgtctgtgggggGTGATTGATGTCAGTAAGAGTGTAGTTAACATCATGGCTTCCAAAATTGAAATCTCCATGAAGAAGGCGGAGCCTATGTCATGGGCACGGCTGGACCTGCCCCCTGCACAGCCTCCAACCAGTGGTGAAAAGAAGGGCGGAGATTGAAAGAGCCTGGAGAGACTgtctaaACAATCTCATCTCCACTGAAACTGCAGAACCATTACAGGTTTCTACCACACTGACGCTCTGGACCACATCCacctttacacacactcacctgcCTTAATCTGacacactgttatcagaatgaGCCTTGAACATCCGCCTTTACCCTCCCATAAAGACTGGTTTTGTCTGACCCTCATAAACACACTGACTCTTTCA
>XR_002649972.1
aaagtgtgacgtgttaaagtattcagccccccttATATCAATACTTTGTAGAGCCAACTTTACCCTGCAACTTATAGAGACCCATTTGTCCATACTAAACAGCTCAAGATcgttatttctaatttcttatttcagtgttttcaatctattttaaactgtaaatattcggctgcactgtaaatgagggtcatcCTCAATGTaatcccgagtgaaaataatgATTGGATATTCTGGGATGTAAAATCACCTCTAATATTGTGTTGAGTATTTGTTGCATAAGGTGTAGCAGCATCCTATCAGAAGATTTTGTCTTCTGgtggaaataaattaatttgtatatttaacatttcttaatttacactgttaatCACTCTGTGAGGTCGAAACATTCCGATTTTAGCCGAATTTTAACGAACTCGGGTCTAACGCAACTTCGGAAAACGATCCGAAGTTTAAAACTGCATTCCCGACTGGAGCCGAGTGATCACGAACTGCAGCCGAAGATAGACGCTTCTCGAAGTTTCCCGAACCGTCCGCGAGTTACCGGCGTTTCTTTAGCCGgcaaaccaaacacacacagagcaagctcctgtctctctcatacacttacacatactcttactcacacacacgcgcacgcacGCGCGCAAACTATCTATCCCTCTCCGTGTTTTATCCGCtaatctgtgtttgtgtgtgttataatgtcAGAGCTGTGTTATAACCGGGGCTGCGGGCAGCGCTTCGATCCGGACAGAAACCCTGAGGatgCATGCACTTTTCATCCCGGGGTTCCAGTGTTCCACGATGCTCTGAAGGGCTGGTCCTGCTGTAAGAGACGCACAACAGACTTCTCAGATTTCCTTAACATTGCTGGCTGCACTAAGGGTTGCCATAATAAGGAAAAACCCCCAGAGCCTGTGAAGCCAGAGGTAAAGTCTTCTGGAGAGAAGAAGGAGCTGGAAGACCTGAAGCCCCGTTTTGATGAGTACATCATTCAGGCTCCAAAACCTCTGGAGTTCATCCAGAGACCCAGTGCTGAGGAGCCACTGGTGGACCTGCAGCAGAAGGTTTCACCGTCCCTTCAACAGGCACTTGAAAAACTCAAGCTAGCTGAGACAAATGCGAGCACAGAGAAAGTCGAGGATGGAAATGAAGTGAAATACGGAACGGTGTGTAAAAACAGAGGCTGCTCTAAGAAATTCTCCGGACCAAAGAGCGACGAGGAGACATGTGTGCATCACTCTGGGGTGCCCATCTTTCACGAAGgGATGAAGTACTGGAGCTGCTGTCAAAAGAAAACATCAGATTTTAACTCATTTCTGTCTCAGGAGGGCTGCAGCAAGGGCTCTCATGTGTGGAAGAATGCAGATGGGAAGAAGGTGGTGCCCTGTCGGTTTGATTGGCACCAGACTGGCGGTCAGGTGACCATCTCAATCTACGCTAAGAACTGTAACCCTGAGCTGTGTTCAGTGCAGGCCAACAGCActactgtgtgtgtgcgtgtggtgtTCGAGGTGGAGAAGGAGTTTGAGCAGAAGCTGAgtctgtgggggGTGATTGATGTCAGTAAGAGTGTAGTTAACATCATGGCTTCCAAAATTGAAATCTCCATGAAGAAGGCGGAGCCTATGTCATGGGCACGGCTGGACCTGCCCCCTGCACAGCCTCCAACCAGTGGTGAAAAGAAGGGCGGAGATTGAAAGAGCCTGGAGAGACTgtctaaACAATCTCATCTCCACTGAAACTGCAGAACCATTACAGgtgGTCTGGGTGGCTGTCAGTGCGTGGCTGTT
>XR_002649973.1
aaagtgtgacgtgttaaagtattcagccccccttATATCAATACTTTGTAGAGCCAACTTTACCCTGCAACTTATAGAGACCCATTTGTCCATACTAAACAGCTCAAGATcgttatttctaatttcttatttcagtgttttcaatctattttaaactgtaaatattcggctgcactgtaaatgagggtcatcCTCAATGTaatcccgagtgaaaataatgATTGGATATTCTGGGATGTAAAATCACCTCTAATATTGTGTTGAGTATTTGTTGCATAAGGTGTAGCAGCATCCTATCAGAAGATTTTGTCTTCTGgtggaaataaattaatttgtatatttaacatttcttaatttacactgttaatCACTCTGTGAGGTCGAAACATTCCGATTTTAGCCGAATTTTAACGAACTCGGGTCTAACGCAACTTCGGAAAACGATCCGAAGTTTAAAACTGCATTCCCGACTGGAGCCGAGTGATCACGAACTGCAGCCGAAGATAGACGCTTCTCGAAGTTTCCCGAACCGTCCGCGAGTTACCGGCGTTTCTTTAGCCGgcaaaccaaacacacacagagcaagctcctgtctctctcatacacttacacatactcttactcacacacacgcgcacgcacGCGCGCAAACTATCTATCCCTCTCCGTGTTTTATCCGCtaatctgtgtttgtgtgtgttataatgtcAGAGCTGTGTTATAACCGGGGCTGCGGGCAGCGCTTCGATCCGGACAGAAACCCTGAGGatgCATGCACTTTTCATCCCGGGGTTCCAGTGTTCCACGATGCTCTGAAGGGCTGGTCCTGCTGTAAGAGACGCACAACAGACTTCTCAGATTTCCTTAACATTGCTGGCTGCACTAAGGGTTGCCATAATAAGGAAAAACCCCCAGAGCCTGTGAAGCCAGAGGTAAAGTCTTCTGGAGAGAAGAAGGAGCTGGAAGACCTGAAGCCCCGTTTTGATGAGTACATCATTCAGGCTCCAAAACCTCTGGAGTTCATCCAGAGACCCAGTGCTGAGGAGCCACTGGTGGACCTGCAGCAGAAGGTTTCACCGTCCCTTCAACAGGCACTTGAAAAACTCAAGCTAGCTGAGACAAATGCGAGCACAGAGAAAGTCGAGGATGGAAATGAAGTGAAATACGGAACGGTGTGTAAAAACAGAGGCTGCTCTAAGAAATTCTCCGGACCAAAGAGCGACGAGGAGACATGTGTGCATCACTCTGGGGTGCCCATCTTTCACGAAGgGATGAAGTACTGGAGCTGCTGTCAAAAGAAAACATCAGATTTTAACTCATTTCTGTCTCAGGAGGGCTGCAGCAAGGGCTCTCATGTGTGGAAGAATGCAGATGGGAAGAAGGTGGTGCCCTGTCGGTTTGATTGGCACCAGACTGGCGGTCAGGTGACCATCTCAATCTACGCTAAGAACTGTAACCCTGAGCTGTGTTCAGTGCAGGCCAACAGCActactgtgtgtgtgcgtgtggtgtTCGAGGTGGAGAAGGAGTTTGAGCAGAAGCTGAgtctgtgggggGTGATTGATGTCAGTAAGAGTGTAGTTAACATCATGGCTTCCAAAATTGAAATCTCCATGAAGAAGGCGGAGCCTATGTCATGGGCACGGCTGGACCTGCCCCCTGCACAGCCTCCAACCAGTGGTGAAAAGAAGGGCGGAGATTGAAAGAGCCTGGAGAGACTgtctaaACAATCTCATCTCCACTGAAACTGCAGAACCATTACAGCAACATCAGGCTAATGCAGCAG

Function

symbol description
chordc1 Enables Hsp90 protein binding activity. Predicted to be involved in centrosome duplication; chaperone-mediated protein folding; and regulation of cellular response to heat.

NR:

description
cysteine and histidine-rich domain-containing protein 1

GO: NA

KEGG:

id description
K16729 CHORDC1, CHP1; cysteine and histidine-rich domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248582.3 True 1922 mRNA 0.47 12 22642610 22649464
XR_002649972.1 False 1796 misc_RNA 0.47 13 22642610 22673984
XR_002649973.1 False 1786 misc_RNA 0.47 13 22642610 22664836

Neighbor

gene id symbol gene type direction distance location
LOC103041960 NA coding upstream 756 22629061 ~ 22641854 (+)
numa1 NA coding upstream 14582 22607823 ~ 22628028 (+)
lamtor1 lamtor1,LOC106581407 coding upstream 38049 22595001 ~ 22604561 (+)
LOC103031483 NA coding upstream 48053 22587190 ~ 22594557 (+)
trnag-ucc_6 NA coding upstream 51120 22591419 ~ 22591490 (+)
ctsc ctsc,LOC107731820,LOC104952660,LOC107735775 coding downstream 89353 22763337 ~ 22770650 (+)
rab38 rab38,rab38a,LOC103046565,LOC107570108,LOC107731817,LOC107558848 coding downstream 97815 22771799 ~ 22778305 (+)
tas2r4 NA coding downstream 108108 22782092 ~ 22783649 (+)
c2cd3 NA coding downstream 111090 22785074 ~ 22812616 (+)
LOC103047173 LOC108410854,LOC107582651 coding downstream 138716 22812700 ~ 22830078 (+)
G5455 NA non-coding upstream 296828 22344076 ~ 22345782 (+)
G5416 NA non-coding upstream 427559 22214411 ~ 22215051 (+)
G5379 NA non-coding upstream 445125 22169112 ~ 22197485 (+)
G5382 NA non-coding upstream 448727 22192933 ~ 22193883 (+)
G5371 NA non-coding upstream 513316 22126998 ~ 22129294 (+)
G5595 NA non-coding downstream 33129 22707113 ~ 22707769 (+)
G5619 NA non-coding downstream 148887 22822871 ~ 22824066 (+)
G5628 NA non-coding downstream 231154 22905138 ~ 22905655 (+)
G5640 rab34a,LOC103022556,LOC108443499,LOC107758713,LOC107672399,LOC107657101 non-coding downstream 275843 22949827 ~ 22951675 (+)
G5642 LOC108443500 non-coding downstream 282076 22956060 ~ 22958499 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other upstream 117864 22407556 ~ 22524746 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other upstream 487684 22056522 ~ 22154926 (+)
G5026 NA other upstream 1643410 20983707 ~ 20999200 (+)
LOC103037169 NA other upstream 2059736 20558523 ~ 20582874 (+)
LOC107197594 NA other upstream 2090975 20549191 ~ 20551635 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other downstream 34928 22708912 ~ 22758213 (+)
G5620 LOC107694033,LOC107752375,LOC107592755,LOC105030986 other downstream 228782 22902766 ~ 22923081 (+)
G5646 NA other downstream 290076 22964060 ~ 22964924 (+)
LOC103024639 NA other downstream 407407 23081391 ~ 23156366 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other downstream 638528 23312512 ~ 23351306 (+)

Expression


Co-expression Network