LOC103041960


Basic Information

Item Value
gene id LOC103041960
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22629061 ~ 22641854 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248583.3
CCGGGTGAAAGTGAAACTTTGACGTAGCGCTGCTGTGCATTTCGGATCTTTGCGGAAAGAGGAAGCGCTGCCGAACAGAGCGAGCGgCAGGGATATGGTGTGTGTTTCTACACTGAATTTTTAAACCTTCAAAATGAGTGACCTCGACAGCGAAGTGgacagGATAATGGAGCGTCCTCCTAGCAGCTACGGCTCAATGCGTAGCGATGATCACGATGACGATGGTGATCATGATGATGTTCCATTGCCGACTGTTAAAGTCAACCTGCAGACACCGGGAGCATCTACAGGGGTCAGACTGTATCGCTCAGACTCTCCAGAGACCGGCATCACTGCGCTCACCCAGCAACAGTCCAGCATCCACATGGAGGGAGCCTATCTCAATGAAATGGGACGTGAGCAGAGTTTTGGGATGAGGACTGCAGATGAGGCAGATGACGAGTTTTACAGTCCCAGAGGGAGGCCGAGCAGGAGGGCAGAGTCTCAGGTGGCTATGGAGGTCATCCCACCAGAGCCCCAGCAGAATCTTCCCCCACCACCAGAGGGCGTTGGCCTACAGTCTGGAATCGAACACGAAACCTTGTCCCTGCCATATGTATTCAAGgctATACAGGGGGTTCTGAGCAAACTGAACCTCGCCGAGCTGCTGTGGTTTAAGCGCAGTCTATGCAGTCAGTATAAGCATCATTTTGAGTTTTCCCAGCTGGAAGACTGCGATGTGCTGGATGTTGTTGACCGGCTGTTGGAGCGGCGTGGGAAAGGAGAGGCACTGTACTACGCCACCCGAACCCTGCAGAACATCAACAAACGGCCACTCGCAGATGATCTGGAAATTAAATGCAAGAGAGcTATTGTCCAACATGAGTTGAGGGGCAGCCACTCAAGGCGCTACTACAACCTGTATGAGGGTACTTGTCGTCCTGGTCAGCAGCGCTTCGTGAGTGACGTCTTTGCAGAGCCGTCCATATATATTGGTGGAGACTGGGACATCAATACAGATCACGAGTTCCACAAGCCGAACTTTTCCAGCAACCAAGGAACACCCATTCGAGCAAGTGATATATTCCGTCCACTGGAGGGAGAAGGCCGGATCCGCACTGTCCTTATGACGGGGGTTCCAGGTATTGGTCTGACTGTAGCTGTGCAGAAGTTCATCATGGACTGGTCGGATGGGCTCACTAACCAGGACTTTCAGTTTGTCTTTTCCATTCCTGGCAAAGAGATGCACTTGGTTAAGGAAAATGATCACAGCTTCCTGGAAATGCTCGCCAACTTCTACTCTGAAACGAAGAACATTGACTTTCTGCAAAACAAGGACTGCCCCATCCTTTTCATTATAGATGCCCTGGAGTTTTGCAGGCAGCCCCTAAACTTTAAGGACAATCCGGAGGTCTGTGACGTCACAACACCAGCTCCTGCCGATGTCCTTTTCACTAGCTTGATCAAGGGTACGCTGCTGCCTCATGCCAGGATATGGATAACGTGTCATAGGGTGGCAGCACGCAAGATCCCTTCAGAGTATGTCAGCAGGTTCACTGATTTGAAAGGGTTATCCAATGAAAAGAAGGATGAGTACTTTACCAAGAGAACTAAGGTTCCAGAGGTCGGTGTCCGAGTGCTCGAACACATTAAGCGCTCTCAGGCAATGTATAACTTTTGCCATTTGCCTCTGTTTTGCTGGATTGTGGGCTTCATCTTTGAAAGACGCTTACGCAGCCCGGAAAACGATGAGCACCCACCGGCCCTCACCAACTTTTACGCCCAGTACATGATTGTGCAGACGAACCGTAAGATTGAGCGCTATGTGGGAGTGGGTTTTGAAGCGTCGCGCTGGAAGGATACTGACAAGGATTTTCTGGTGAAGATGGGTAAGCTTGCATTGAAGATGATTCTAGAGGAAAGAGATGTTTTCTTTGAGGATGATATTGCGGCCATGGAGTTGGACATGGAGCAGGTGGCCAATCGAGGAGGGATTTCAGCTGAAGTGAGGCGTCAGGGTGGGTACGGACGAAGTGGGCGAGCCTTCAGCTTTGTTCACTACAGCATGCAGGAATTCATGGCTGCCGTGTACACGTATGTGACGTATCGGAACAAGGGCAAGAACGTCTTTGAGCAGCAGATCAAGAATAAGATGGCCATGCTTTTGAAGGACAGACCTGTCTTTGACCTTTACAAACTGGCCGTCGACCGAGCCCTAGCCAGCCGCAATGGACACCTGGACATATTCCTGCGCTTTCTCTTTGGCTTCGTCACGCCCGGGACGGAGGCACACCTGCGCGGATACCTGATGCCCCAGCACCACCCGGTGCCCAGGGGCTTGGAAGATGTTGTAAAGTACGTGAACAAGAAGATAAAAGAGAATGCTTCACCAGACAGGTGCAAGAACCTGGAGTGGTGCCTCAACGAGCTGGAGGAGGGCAAGAATGATAGATGACAAAACTAAGAATGATTATGGGCGACATTTTGGAGGCAGCGTTCACTACATCTTTTAGTTCTGACTTTTTAAATCCTTTATTTATACTGCTCACTCCGAAGACCAGTGCTGGAAGTCATCAAGCTTAAAGAGGTGTAGTCACATTTTTAGATTACACTATATATGTTTCTACAGAATAAAACACCTTGGAATTAACATCTGTTGCATATGAAACCACATCACATTACATCaggttttaagtttaagttattAAATTTTGTTTACAGACATCCATTGTTTCTTAGCACATTGGCCTAACATCGCCTCTTGTAAATTAAGCAAGTACACGTCAGCAACTTAAAATCTCATGTCTCACTAAATCTGGAATCAGTAATTAATCATGGTACTTTTggatgggatttttttttttaccaaactgCCCCATGATTTGAGAACCAGATGAAGGTGTGTGAATGACTGAATACAGAAGCACTGGCCTATTTGGAGGAGTAACAGTAAAATCGTCTTGAACTAAATCATATCACGTTCATCTTTGTTTTCGGGGTTATGCCGGGTTCACAAGTGGTTtattcaaaagaaaaaacaatcaaGTTGTTTGGCATTTGAACATGGAAGTCTTTAAAGGATTATGAGAATAGTCTGTGAAAAAGAGCCgttattttttatgtacagCCATATTTAGACCAAGCCTGAAGTTTATTTCTTATTCTATCCTCTGACTTTTTCAGTAACATTTCAGTAAAAAGCCAGAAAATAAAAGTCAACTAAATGGTGGGGGGGGTAGGCTTTTGTTACTTGTCAGCCACATTAGCTTCTTAGATGTATTGCTAATGGTGGATTGTGAGCTTTTATCATGTATTAGCTAGATTGGCCTCCTAGCTTGTACTTGCTAGACACAATGgtcttcttatttttattattttattattcttttctcAAAATTCTCAATGCACTCCTACAGTTTTTGACGTAGAGCCACAAAACATCACAAGATTGTACAACCAATAGCTTTActagttgtttattttttattttgttgattttcagAGATTTATTATTTGCCTTGTTTGTGAATCCGGTATCTGGTCTGCCTGAGTGAGGGCTGGGGTTATCTTGGGCATAAGGGTGAGACAATTTCCTGAGGTTGTGAAGGGAAACAGGACATGTTGACACATCGATGAGTTGCCTTATTGAATGCATTTTATGATATGTAAACCAATCATATATACTTGACCATAGAGTATAAAAACAGCCATACACTGATTATTACATGTACATTTAGGCATTTACACTGATTAATGAACAGGAGGagaatatttactgttttataagtATTGCACatgccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtatgtaatgtaaaaattgtGTCATCAAAAGCTGTGTTTACAGATGAAGATGCACTAGATGAAGAATTCTATGCAGTTCATTAGATCTGGAGAATCCAATTTTAAACATACTGCTGATGTTCATCACTGACAAACTCTAGTAGAACGTCTGAAATGCTGCTACAGAAACCTGTGCTGATATTAAAGGGCAACTCCACCTGGTTTCCAAAATTCTGTGCATAACTCAGTGTTTATGATGAACACATTCAGAGTGgggtttttatttgtttagttctGTTTTTCTTAGCAAGAAGAGCCTATTAATATGAATGATTtaggatattttaaaaaatatcttgGCTCCTCAAAGGGTTTTTGGCACTTGGTTTATGTGTGTTAACTGTGGCCTCTGCCTCGCGCTGCCTCCAGCATaggtaataatatttatttgagCAAAGTCCGCAGCAGGAAGAGCTCCATCTATTGATGAATGTGAGTCATgcattttgagtttgctgttattaACTGTAATTATGCAAAGAATTTTGCAAAAAAGTGGGTGGACTTGAAGAACTGAAGGAAATCTTCATTAGTGTAACTTTGATATGTATGGTGCTGTTTCtcagctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagcctgAATGAACACGTGTGTAATTGCTGCCTACAGTCTCCTTCACTCAGCCTGGTTTGCTTTACAAACACCAGCTCTAATGGTGAAGTGTAGGTAATGTGAGTTGAGTGTAGGTTGGGAGAGATCTAATCCATGTAACAGCTGGATGTCTTATTATatcacagtaaataaagacctctgttattaatgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248583.3 True 4651 mRNA 0.44 7 22629061 22641854

Neighbor

gene id symbol gene type direction distance location
numa1 NA coding upstream 1033 22607823 ~ 22628028 (+)
lamtor1 lamtor1,LOC106581407 coding upstream 24500 22595001 ~ 22604561 (+)
LOC103031483 NA coding upstream 34504 22587190 ~ 22594557 (+)
nox4 nox4 coding downstream 30201 22672055 ~ 22692671 (+)
ctsc ctsc,LOC107731820,LOC104952660,LOC107735775 coding downstream 121483 22763337 ~ 22770650 (+)
rab38 rab38,rab38a,LOC103046565,LOC107570108,LOC107731817,LOC107558848 coding downstream 129945 22771799 ~ 22778305 (+)
tas2r4 NA coding downstream 140238 22782092 ~ 22783649 (+)
c2cd3 NA coding downstream 143220 22785074 ~ 22812616 (+)
G5455 NA non-coding upstream 283279 22344076 ~ 22345782 (+)
G5416 NA non-coding upstream 414010 22214411 ~ 22215051 (+)
G5379 NA non-coding upstream 431576 22169112 ~ 22197485 (+)
G5382 NA non-coding upstream 435178 22192933 ~ 22193883 (+)
G5371 NA non-coding upstream 499767 22126998 ~ 22129294 (+)
G5595 NA non-coding downstream 65259 22707113 ~ 22707769 (+)
G5619 NA non-coding downstream 181017 22822871 ~ 22824066 (+)
G5628 NA non-coding downstream 263284 22905138 ~ 22905655 (+)
G5640 rab34a,LOC103022556,LOC108443499,LOC107758713,LOC107672399,LOC107657101 non-coding downstream 307973 22949827 ~ 22951675 (+)
G5642 LOC108443500 non-coding downstream 314206 22956060 ~ 22958499 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other upstream 104315 22407556 ~ 22524746 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other upstream 474135 22056522 ~ 22154926 (+)
G5026 NA other upstream 1629861 20983707 ~ 20999200 (+)
LOC103037169 NA other upstream 2046187 20558523 ~ 20582874 (+)
LOC107197594 NA other upstream 2077426 20549191 ~ 20551635 (+)
LOC103041654 chordc1,LOC108412466 other downstream 756 22642610 ~ 22673984 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other downstream 67058 22708912 ~ 22758213 (+)
G5620 LOC107694033,LOC107752375,LOC107592755,LOC105030986 other downstream 260912 22902766 ~ 22923081 (+)
G5646 NA other downstream 322206 22964060 ~ 22964924 (+)
LOC103024639 NA other downstream 439537 23081391 ~ 23156366 (+)

Expression


Co-expression Network