lamtor1 (lamtor1,LOC106581407)


Basic Information

Item Value
gene id lamtor1
gene name lamtor1,LOC106581407
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22595001 ~ 22604561 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248584.3
TCCTGGTGTAAGCAGGGTGTCATGTGATAGTGTATCCGTTAGCAGCCAAgagcagacacacacagctCCAATCCGGATTCTTCACTTTTAAAACGCTTTGAAACGGTTCGGATCCGGTTCTACAGCCCCTGCAGGAGAAGCTGGAGACACACTGAGCCCATGGGGTGCTGTTACAGCAGCGAGACGGAGACCAACGACCAGGAAGGGGATGAGAACAAGCCTCTGATTCCGCGTCCCAACCCAGACAGTAAACCGCCCAATGGGACAGAACGAACCCCACCAGGGCTGTCCTCCACACGCACTGATGAACAGGCCCTGCTCACCTCCATCCTCACCAAGACCGCCATGAACATTATAGATGTATCGGCTGCAGATTCTCAGGGTATGGAGCAGCATGAGTACATGGACAAAGCCAGACAGTACAGCACTAAACTGGCAGTATTGAGCAGTACTCTATCTCAGAAGAAGCCGGCCCCTCTGCCCTCTCTCACAAGCCAGCCTCACCAAGTGCTCGCCAGTGACCTGGTGCCCTATTCCGACGTCCAGCAGGTGTCGAAGATAGCAGCATACGCTTACAGCGCCATCTCCCAAATCAAGGTGGACGCCAAAGAAGATCTTGTGGTGCAGTTTGCAATTCCGTGATTCAAATCATCCCTTACCCCAGCcccccttctttctctctttctctcttacccactctctctttctttctatcttaaCCTCCCACCACCCTAAAAGCTAACCCAGCCAGCAGGAGATGAGCCCGCCTCTTTGCTGACCCTCGCCCAATCAGACGCACAGTTTCTCCAGAGACCTCCCCCTGCAGGAATGCCCTGCTTCATATGCGCTTTTGGACTGTCCGACAGTGAGTTACAATCACCTGGCCGGATGAGCTGCATGCTAACAGATCATCTGGCCTCACCTCACCCTCAAATCCGGATCATAATAAACGCTTCGTGTTGTGTTCTGCTGGGAACACCCTGCCggttgtttgtgtttatgatgGGTGCGGTTCTGCGTTCTTGTCTAGACTGATGAAATCTGCCTTGGAGGTCCAGTCTGTgctttcactgctcagactcTTCATAAAAATACTTGAGCTTTTGTTTTGCCCCTCAACCCTGGCATGTCTGgtctccaaacttttaactgctGCATTAATTTAAGGTTAATATAACCGCAAAATGCCCCAACATTTATTCTAGCTCACACCCACAATCAGTTTAAGACTGTAAAAGTTTCCAGCTACACAGCGatagctttgtttgtttttaaaaaaaactcacactgGCACTTATGGTAACAACATCAGCAGGTCTCCGAGACCTTACAGAAGACCTGGATTCTGATTTAGGTGACTGTTGATTTTTAGTGTTTTCAGCCTTAATTAGCACACGTAGATCTGAACTATAGAAGCAGCGTTTTGAGACCCAGCATGTTTTGGTTGATGGACTAGAGCCAGAGTCCAAGGAAAATTGTGTATTTCTTTGGATTTTTTGGGAAACTAGTCCTTTCAGCTAGTGGTTTAATAAGGGGCATGTTCCTCCAGCACAGAGTGTATAAACAGATCCCAACTGAAAGCTGTAAGGGTTAAAGGTCCTGCGGTCAGACAGACCGGTAGATTGTTGCTTGGTTGTGAACACTACGTCGCTCACATGATctcaaattattttgtttttttgtttgtttttcgtTGTTTcgttttttattcacacaatTACTATTGATCAGTTGAGACAAAAGCAGGATTGCTGTGTCGCAAATATTCACTCACACGAGCTTAAGCACCAGTATGTATTTATTCTGACTGGCAGGACCTTTATTATTGATCACCTCAAAAATATCACCATATTTCTCAAAATACCGCCCTGCACTGCAGTGGAACTACAgtaaggaggagagagagaaatagaaagaatgTGTGATGCTCGCTTGACCAATTAAGGATGGAGGGCAGTGCTTTTGGAGAGGGGGGGAGGTATCTAAATTATTTTGCTTCGtttttattggtctgttcatcatgaCATTATGAGTTGCTGATGTTTACAAACAGAgtttaatatcattttaaaaaggcCTGTCGTTTTACTTGGCCTCTGGATTGTTCTAGAGCTGTCCTGTCAGGCTTGAGATCTTGAAAACAGGATGGGCAGGCCATACCCTTGATTAGATTTTTGGCTTCTGCTTCTGAAATGAAGCAGGATAGAGGAAGGAGCAGAATGGGCGGGGTCTAAGTCTGCAATAGTTCTTTTCTAGTTCTGTAGAAGGAGTATGACTGGGGCTGGGTTTGCAATTAATCCAGAATATTCTAGAtcaaatattctttaaaaaattattattatttaaaaaaactctttttaaataactttGCCAAGGTTTCAATGATCATGAAGTGGTGAGGGTGGGTTGCGGTTGAGTCGGTTGGGCGGTGGTGGGCCGAGAGCGTGTTTGGGGGGGGGTTGGTGGATGTATAAAGAGATTTTAATGGGTTGTTTGGGGAGGGGGAGGGAGTGGCGGTGGAGGGTGGGGGAAATTTGTAAATGATGTTTGTGCCGATGCCTTTAGTGCATACTCTGAGGAGCGTAGAACGCGCCTCAGCTCaaaaatcagtgatggttttattCAGGAGGGAGCAGCGGGGTGACTTCCAATCGTTTGAGGATTTATCTTAAAGTAGcggttctataaaaaaaaaagacttgtcTCAGATGTCCTCGATCAGCCAATCAGCGATGTTTATTGTTCAATTTCTTTCTAATTCtttctaatttttaattttaataataataaacactaggAAATGATACTAACTAAAATTATCTCTAAAAAACTTGCTCACACTTTTCTTAACCCACTTTAACTGCATTtaacattttccttttttaagatGGTTGTGAGCTGTTAAAATGAGCAAACCTAGCTAACATTGACAAGCTAAATGTGAACATTGAACACGCTGACTGAGGTCAACTACATCTGAAATAACAGGAAAATTTATAAATTTGATGTTTTTCTGAACCATTCCTTTAAGCTCTACTTAACATATGTAATAAAGCTCCGCCCCTGAACAGCAGCGCTTTTATCCCACAGTTTCAACTTTTAAACAAGCAGGTAAACACCAAATATCACCACATCAGTTATTCCTACCCCAGACTAACAtataaacacacccacacacagagtTGTTTAATGAGCgcataaatgaatataaatgagGAGGAGGAGTTCTGCTGTACTTTCTACAATAATCTGAATAATCAGCAGCAGAAtgtttgtaattatttatttctttcataTTATGGTATTTATGTTGGCTCTAGTCCGCATGGTTCCGGTGCGTCAGAGCGCGCTTTCACTGGGTTATGAAAGGGATGAAAACGCTGCAGACGTTTgtctttgttattattattattattatttagcttTGTTGCAGTGTGCTAATAatagtattgtttattttgcgGGTTCTTGTTTGTTACCTAAACATGTACTACTACCTGAATGACCCGTTCAGTTCTTAGGCTAGAaccaaaaagtttgattcagattttctgttaataattttttttttgaaatgaTGATATTAATGCATTAAAGACTTTGAAAACTA

Function

symbol description
lamtor1 Predicted to contribute to guanyl-nucleotide exchange factor activity and molecular adaptor activity. Predicted to be involved in several processes, including cellular response to amino acid stimulus; positive regulation of MAPK cascade; and regulation of receptor recycling. Predicted to act upstream of or within several processes, including cholesterol homeostasis; lysosome organization; and positive regulation of TOR signaling. Predicted to be located in late endosome membrane; lysosomal membrane; and membrane raft. Predicted to be part of Ragulator complex. Predicted to be active in lysosome. Orthologous to human LAMTOR1 (late endosomal/lysosomal adaptor, MAPK and MTOR activator 1).

NR:

description
PREDICTED: ragulator complex protein LAMTOR1

GO: NA

KEGG:

id description
K20397 LAMTOR1; ragulator complex protein LAMTOR1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248584.3 True 3610 mRNA 0.43 5 22595001 22604561

Neighbor

gene id symbol gene type direction distance location
LOC103031483 NA coding upstream 444 22587190 ~ 22594557 (+)
trnag-ucc_6 NA coding upstream 3511 22591419 ~ 22591490 (+)
trnag-ucc_5 NA coding upstream 4429 22590501 ~ 22590572 (+)
trnag-ucc_4 NA coding upstream 5470 22589460 ~ 22589531 (+)
aasdhppt aasdhppt coding upstream 79544 22506867 ~ 22515457 (+)
numa1 NA coding downstream 3262 22607823 ~ 22628028 (+)
LOC103041960 NA coding downstream 24500 22629061 ~ 22641854 (+)
nox4 nox4 coding downstream 67494 22672055 ~ 22692671 (+)
ctsc ctsc,LOC107731820,LOC104952660,LOC107735775 coding downstream 158776 22763337 ~ 22770650 (+)
rab38 rab38,rab38a,LOC103046565,LOC107570108,LOC107731817,LOC107558848 coding downstream 167238 22771799 ~ 22778305 (+)
G5455 NA non-coding upstream 249219 22344076 ~ 22345782 (+)
G5416 NA non-coding upstream 379950 22214411 ~ 22215051 (+)
G5379 NA non-coding upstream 397516 22169112 ~ 22197485 (+)
G5382 NA non-coding upstream 401118 22192933 ~ 22193883 (+)
G5371 NA non-coding upstream 465707 22126998 ~ 22129294 (+)
G5595 NA non-coding downstream 102552 22707113 ~ 22707769 (+)
G5619 NA non-coding downstream 218310 22822871 ~ 22824066 (+)
G5628 NA non-coding downstream 300577 22905138 ~ 22905655 (+)
G5640 rab34a,LOC103022556,LOC108443499,LOC107758713,LOC107672399,LOC107657101 non-coding downstream 345266 22949827 ~ 22951675 (+)
G5642 LOC108443500 non-coding downstream 351499 22956060 ~ 22958499 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other upstream 70255 22407556 ~ 22524746 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other upstream 440075 22056522 ~ 22154926 (+)
G5026 NA other upstream 1595801 20983707 ~ 20999200 (+)
LOC103037169 NA other upstream 2012127 20558523 ~ 20582874 (+)
LOC107197594 NA other upstream 2043366 20549191 ~ 20551635 (+)
LOC103041654 chordc1,LOC108412466 other downstream 38049 22642610 ~ 22673984 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other downstream 104351 22708912 ~ 22758213 (+)
G5620 LOC107694033,LOC107752375,LOC107592755,LOC105030986 other downstream 298205 22902766 ~ 22923081 (+)
G5646 NA other downstream 359499 22964060 ~ 22964924 (+)
LOC103024639 NA other downstream 476830 23081391 ~ 23156366 (+)

Expression


Co-expression Network