pdgfd (pdgfd)


Basic Information

Item Value
gene id pdgfd
gene name pdgfd
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22344039 ~ 22366316 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248597.3
TCCGAAGTATCCTCGAAGAATCGCACGCGCGCATCACGCACGCGATAAGTGATAAATAAGTAGCAGCTTCGGGACGGTTTGGCGGCGCGCGCGTAGAGGAGTATATGAGCGCGCTCCGCCGCCGCCGCGCGGACTCGTTATGTAAAGCGCGAGCAGAGAAACTAACCAGTGTGCGCGAGCAAGCGAGCTCGAGGCTTTAGCGGCAGCAGTCAGTCGGGGTAGGTGGAGCTCGAGGGGCTTTTTTGGGGGAGCGCGCGCGCGCTGTCCCACTCCCGACTGCGCGCGTGAAGCGATATGATGAGTCCAGCGGCGCTCGCGCTCTcgctagcgctgctgctgctccgcgGCACAGAGACGCACGCGCTCACAGTCAAAGCACTGCGGACCGGGAACGCGCGGAGAGACGACACCAATCGCCTCACAGACTTGTTCCGTCAAGAGGAGGTCATCATGGTTACGGGAGGAGGACAGGTCCACAGCCCGCGGTACCCCAACGCCTACCCCCGGAACCTCCTGTTATCTTGGAATCTGCTCTCGGCTCCACAAACCCGCATCCTGCTGGAGTTCGATGGGCAGTTTGGCCTGGAGGAGCCTGAGAACAGCGTCTGCAGatatgaCTTTGTAGAAGTGGAGGACATATCAGAGACCATCACAGTAATCTGGGGTCGCTGGTGTGGGAGAAAAGCCCCCCGGCCCATAACGTCCAGAACCAACAACATCAGAATCACTTTCAAGTCGGACGATTACTTTGTGGCAAAACCAGGATTCAAACTCTGCTACTCCCTGCTGAATGATGTCCCCCTGATATCATTGACCAACTGGGAGCCAGTGACACCTGTATTGGATGTAACTGAAGCTCCACTCTCTGTGGATGAGCTTGACAGTGTAATTTCTGGGTTCAGTACAGTGGAGGAGGTCCTGAAGCACCTGAACCCCAGCACCTGGCAGCAGGACCTCAACAGCatctacactcacactcactactaCATGCCCCGCAGCTACTTTACTGACCGCAAACAGAAATtgGATCTGGATCGTCTGTATGATGATGTTAAGCAGTACAGCTGCACACCAAGGAACTTCTCAGTGAACCTGCGAGAGGAGCTGAGGGCCACCAATGCTGTGTTTTTCCCACGGTGTCTGCTGGTGCAGCGCTGCGGTGGAAACTGTGGCTGTGGCACCGACAGCTGGAACTCCTGCAGCTGCGGTTCTGCCAAGACTGTCAACAAACTGCACGAGGTGCTGAAGTTCTCTCCAGGGCAGAACTTTTACAGGAAGAAGGTGAGGGCACGCTGGGTTCTAGAGGAGATCCACCTACAGCACCATGAACGCTGCGAGTGTGTATGTCAGTCACGACCTCCACGATGATGCACACAGTATTTCCAGCAGCCTTGACCAATGCAAATGTGTAGCtgtcttattttgtattttcttttttatctgaaaGTGCCTTTCTGctctcacatacacaaacacacacagtattatttatttctgttttatacgGACTGTTAACAGGACCAAGTCtcacaaaaactttttttttgcctactgtctgtctctctctctcgcatttgtccgcgcacaaacacacacactttctcctttttttctgtccTCGCTGCCGCTCTGACACATCAAAGCAAAAAGCCAGTGGAGTGTTAAACCCGCTAACAACACTGCATTCCAATCATTcaagcttacacacacacacactctctgcgCTTCGGAAACCTCCCCTCTTCCCAAACCACCACCGCCTTCCTAAACCCCACCTCCttcctaaacttaaaattatcTGAACGGCGCCTCCTACTTACACTCCGACTCCTTCCTAAACATCATCTGCCCCTTATACCTCACCTCCTATTCAAACCTCAAATTCTCCCTTAACTCCACCTTACTTCTTATCTGTATCTAAACTCCCCCTAAAGCTTCACCTCCTTCCTAAACCTCACCACCTGTTTTAATCTCAGCTTCTTCGTAAGCCTCATTCTTTAATACACTACCTACTCCTTAAACATCCTCTCCTCCTAAATCCCACCTCCTCCTTAAACCTCAACCTCCCCCCTAACCTCACTTACTTCACTTCCTTCCTATATCTAAACTCTCCCTAAACTTCACCTTTTACCGAAATCTAAACCGTCACTGCCTTTGTTAATCTCACCCTCTTTTCCAAACCTCAAATCCTCCCTTAACCACACtccttattcttatttctttccTTTATCTAGACTCCCCCTAAACCTCATCACCTCCTTTAATCTCAGCTTCTTCGTAAGCCTTGTTAAACACCCACCTACTCCTTAAGCATCCCATTTCCTCCCTAAAGCTCACTTACTCCCTATACCTAACATTTCCCCTAAAACCTCACCTCCTCCTTAAACTCACTTACTTCCTTGTTATATCTAAACTCACCCAAAACCTCACCTTCTACCTGTATATAAACCTTCACCCTCTCCATAAAACTTCACCTCCTTTCCAAACCTCAAATCCTCCCTTAACCCCACCTTGTCCCTTAACCTTACTTCCTACCTTTatctaaactcattttaaatctcactctctccctaAACCTCACTTTATTCCTATATCTACACTCCCCTCAACCTTCAACCCCTttaaactcaactcaacttaaaTCTCAGCTCCTTTGTAAGCCTCACTCTTTAAACCTCCTTCTAAATCCCACCTCCTTTTTCCAACTCCTCCTCAAATCTCACTTCCTACCTATATCTTAATTCCATCTAAACCTTAACCTCTTTTTTAAACCTCACCTCCAACCTCAAATACTCAAAACCCAAACTTGTCCCTTAACATTACTTTCTACCTATATCAAAACTTCACCTGCTTTTAAAATCTCACCCTCTCCCATAAACCATCACTTCTTCTTCAAACCTCAAATTCTCCCTTAACCCACCTCGTTGCCTAACCTTACTTCCTACCTATATCTAAACCTTCACCTCCTTTTAAACCTCACCTTCTTCCTAAACATCACCTCCTACCTTTATCTAAATTTCTCCTTAACAGTCAACTCCTCTCTTAACCTCACCTCTTTCTAAAAACCCACCCCCTCCTCCTTTAACTTCACCTCCACTCTGAACCTCACCTCCTTCAGCCTCACTTCAACTTTGAAACCCTACCTCCTCTATGTACAAAGATGATTGTCTATCAGACACagataaaagaaaacacaacagTCAGATAGATAATGAGCTGGTAAGGGCAGAGCACCAAACACTTTACCGTTAAACTGTTTTATATGTAACTTGTCATAAAAGCACAATAAATGGAAAGAtgttcatgttttaaaagtG
>XM_007248598.3
TCCGAAGTATCCTCGAAGAATCGCACGCGCGCATCACGCACGCGATAAGTGATAAATAAGTAGCAGCTTCGGGACGGTTTGGCGGCGCGCGCGTAGAGGAGTATATGAGCGCGCTCCGCCGCCGCCGCGCGGACTCGTTATGTAAAGCGCGAGCAGAGAAACTAACCAGTGTGCGCGAGCAAGCGAGCTCGAGGCTTTAGCGGCAGCAGTCAGTCGGGGTAGGTGGAGCTCGAGGGGCTTTTTTGGGGGAGCGCGCGCGCGCTGTCCCACTCCCGACTGCGCGCGTGAAGCGATATGATGAGTCCAGCGGCGCTCGCGCTCTcgctagcgctgctgctgctccgcgGCACAGAGACGCACGCGCTCACAGTCAAAGCACTGCGGACCGGGAACGCGCGGAGAGACGACTTGTTCCGTCAAGAGGAGGTCATCATGGTTACGGGAGGAGGACAGGTCCACAGCCCGCGGTACCCCAACGCCTACCCCCGGAACCTCCTGTTATCTTGGAATCTGCTCTCGGCTCCACAAACCCGCATCCTGCTGGAGTTCGATGGGCAGTTTGGCCTGGAGGAGCCTGAGAACAGCGTCTGCAGatatgaCTTTGTAGAAGTGGAGGACATATCAGAGACCATCACAGTAATCTGGGGTCGCTGGTGTGGGAGAAAAGCCCCCCGGCCCATAACGTCCAGAACCAACAACATCAGAATCACTTTCAAGTCGGACGATTACTTTGTGGCAAAACCAGGATTCAAACTCTGCTACTCCCTGCTGAATGATGTCCCCCTGATATCATTGACCAACTGGGAGCCAGTGACACCTGTATTGGATGTAACTGAAGCTCCACTCTCTGTGGATGAGCTTGACAGTGTAATTTCTGGGTTCAGTACAGTGGAGGAGGTCCTGAAGCACCTGAACCCCAGCACCTGGCAGCAGGACCTCAACAGCatctacactcacactcactactaCATGCCCCGCAGCTACTTTACTGACCGCAAACAGAAATtgGATCTGGATCGTCTGTATGATGATGTTAAGCAGTACAGCTGCACACCAAGGAACTTCTCAGTGAACCTGCGAGAGGAGCTGAGGGCCACCAATGCTGTGTTTTTCCCACGGTGTCTGCTGGTGCAGCGCTGCGGTGGAAACTGTGGCTGTGGCACCGACAGCTGGAACTCCTGCAGCTGCGGTTCTGCCAAGACTGTCAACAAACTGCACGAGGTGCTGAAGTTCTCTCCAGGGCAGAACTTTTACAGGAAGAAGGTGAGGGCACGCTGGGTTCTAGAGGAGATCCACCTACAGCACCATGAACGCTGCGAGTGTGTATGTCAGTCACGACCTCCACGATGATGCACACAGTATTTCCAGCAGCCTTGACCAATGCAAATGTGTAGCtgtcttattttgtattttcttttttatctgaaaGTGCCTTTCTGctctcacatacacaaacacacacagtattatttatttctgttttatacgGACTGTTAACAGGACCAAGTCtcacaaaaactttttttttgcctactgtctgtctctctctctcgcatttgtccgcgcacaaacacacacactttctcctttttttctgtccTCGCTGCCGCTCTGACACATCAAAGCAAAAAGCCAGTGGAGTGTTAAACCCGCTAACAACACTGCATTCCAATCATTcaagcttacacacacacacactctctgcgCTTCGGAAACCTCCCCTCTTCCCAAACCACCACCGCCTTCCTAAACCCCACCTCCttcctaaacttaaaattatcTGAACGGCGCCTCCTACTTACACTCCGACTCCTTCCTAAACATCATCTGCCCCTTATACCTCACCTCCTATTCAAACCTCAAATTCTCCCTTAACTCCACCTTACTTCTTATCTGTATCTAAACTCCCCCTAAAGCTTCACCTCCTTCCTAAACCTCACCACCTGTTTTAATCTCAGCTTCTTCGTAAGCCTCATTCTTTAATACACTACCTACTCCTTAAACATCCTCTCCTCCTAAATCCCACCTCCTCCTTAAACCTCAACCTCCCCCCTAACCTCACTTACTTCACTTCCTTCCTATATCTAAACTCTCCCTAAACTTCACCTTTTACCGAAATCTAAACCGTCACTGCCTTTGTTAATCTCACCCTCTTTTCCAAACCTCAAATCCTCCCTTAACCACACtccttattcttatttctttccTTTATCTAGACTCCCCCTAAACCTCATCACCTCCTTTAATCTCAGCTTCTTCGTAAGCCTTGTTAAACACCCACCTACTCCTTAAGCATCCCATTTCCTCCCTAAAGCTCACTTACTCCCTATACCTAACATTTCCCCTAAAACCTCACCTCCTCCTTAAACTCACTTACTTCCTTGTTATATCTAAACTCACCCAAAACCTCACCTTCTACCTGTATATAAACCTTCACCCTCTCCATAAAACTTCACCTCCTTTCCAAACCTCAAATCCTCCCTTAACCCCACCTTGTCCCTTAACCTTACTTCCTACCTTTatctaaactcattttaaatctcactctctccctaAACCTCACTTTATTCCTATATCTACACTCCCCTCAACCTTCAACCCCTttaaactcaactcaacttaaaTCTCAGCTCCTTTGTAAGCCTCACTCTTTAAACCTCCTTCTAAATCCCACCTCCTTTTTCCAACTCCTCCTCAAATCTCACTTCCTACCTATATCTTAATTCCATCTAAACCTTAACCTCTTTTTTAAACCTCACCTCCAACCTCAAATACTCAAAACCCAAACTTGTCCCTTAACATTACTTTCTACCTATATCAAAACTTCACCTGCTTTTAAAATCTCACCCTCTCCCATAAACCATCACTTCTTCTTCAAACCTCAAATTCTCCCTTAACCCACCTCGTTGCCTAACCTTACTTCCTACCTATATCTAAACCTTCACCTCCTTTTAAACCTCACCTTCTTCCTAAACATCACCTCCTACCTTTATCTAAATTTCTCCTTAACAGTCAACTCCTCTCTTAACCTCACCTCTTTCTAAAAACCCACCCCCTCCTCCTTTAACTTCACCTCCACTCTGAACCTCACCTCCTTCAGCCTCACTTCAACTTTGAAACCCTACCTCCTCTATGTACAAAGATGATTGTCTATCAGACACagataaaagaaaacacaacagTCAGATAGATAATGAGCTGGTAAGGGCAGAGCACCAAACACTTTACCGTTAAACTGTTTTATATGTAACTTGTCATAAAAGCACAATAAATGGAAAGAtgttcatgttttaaaagtG

Function

symbol description
pdgfd Predicted to enable growth factor activity and platelet-derived growth factor receptor binding activity. Predicted to act upstream of or within platelet-derived growth factor receptor signaling pathway. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in prostatic hypertrophy. Orthologous to human PDGFD (platelet derived growth factor D).

NR:

description
platelet-derived growth factor D-like

GO: NA

KEGG:

id description
K05450 PDGFC_D; platelet derived growth factor C/D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248597.3 True 3317 mRNA 0.47 7 22344039 22366316
XM_007248598.3 False 3299 mRNA 0.47 7 22344039 22366316

Neighbor

gene id symbol gene type direction distance location
fzd4 fzd4,LOC107600811,LOC107551868 coding downstream 133126 22200757 ~ 22210913 (-)
LOC111192513 NA coding downstream 213562 22128934 ~ 22130477 (-)
parl parl,LOC107670111,LOC107689587 coding downstream 297061 22036488 ~ 22046978 (-)
stard10 stard10,LOC108278271,LOC106581404 coding downstream 526092 21776231 ~ 21817947 (-)
arap1 arap1 coding downstream 577449 21655023 ~ 21766590 (-)
msantd4 msantd4 coding upstream 134782 22501098 ~ 22506707 (-)
gucy1a2 gucy1a2,LOC107706059,LOC107669873 coding upstream 155348 22521664 ~ 22551935 (-)
cwf19l2 cwf19l2 coding upstream 188142 22554458 ~ 22574424 (-)
trnag-ucc_1 NA coding upstream 209161 22575477 ~ 22575548 (-)
trnag-ucc_2 NA coding upstream 209759 22576075 ~ 22576146 (-)
G5414 NA non-coding downstream 150105 22193017 ~ 22193934 (-)
G5401 NA non-coding downstream 219789 22121889 ~ 22124250 (-)
G5400 NA non-coding downstream 223570 22118260 ~ 22120469 (-)
G5392 NA non-coding downstream 235823 22041654 ~ 22108216 (-)
G5537 lamtor1,LOC106581407 non-coding upstream 107164 22473480 ~ 22603357 (-)
G5541 LOC107756230,LOC107756206,LOC107689577,LOC107670112,LOC107725765 non-coding upstream 125734 22492050 ~ 22496877 (-)
G5570 NA non-coding upstream 271742 22638058 ~ 22641835 (-)
G5568 NA non-coding upstream 282053 22648369 ~ 22649909 (-)
G5658 rab38,LOC103046565,LOC102778643 non-coding upstream 405463 22771779 ~ 22772067 (-)
G5396 NA other downstream 143731 22131234 ~ 22200308 (-)
G5407 NA other downstream 185854 22155785 ~ 22158185 (-)
LOC111192507 NA other downstream 382574 21946786 ~ 21961465 (-)
inppl1 inppl1,inppl1a,LOC108261207 other downstream 403233 21916366 ~ 21940806 (-)
G5095 eif4g1 other downstream 1706971 20630225 ~ 20637068 (-)
G5565 NA other upstream 241453 22607769 ~ 22628182 (-)
G5667 c2cd3 other upstream 430029 22796345 ~ 22798290 (-)
LOC103028862 dynll2a,LOC107554284,LOC103397138 other upstream 968750 23335066 ~ 23339735 (-)
srsf1 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234 other upstream 978180 23344496 ~ 23351222 (-)
LOC103033507 fam222bb,LOC107661104 other upstream 1182408 23548724 ~ 23560500 (-)

Expression


Co-expression Network