LOC103047689


Basic Information

Item Value
gene id LOC103047689
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22835801 ~ 22838427 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248605.2
AAAATACCCAGCTGGATGCAGCCGGGGGGTGAGGGCACGTTTTTAAAGCTCCCCGCGGACGACTGTGTCAGTAGGTCTTCTGAGACACAGGTGCTCCACAGCTCTGCTATGACTGAGAAACAGGTTCCCTTCACACTGCTGCGCCAGTCTAGCTGGGACCCCTTCCACGACTGGCACGGCAGCCGGATCTTTGACCAGGCGTTTGGAATGCCAGTCCTGCCCGGGGAGCTCCTCTGCTGGCCGAGCAGCCACTGGCCCGGGTACCTGCATCCACCGGGCTCCACTGGACTCTTCAGCCTCTTCCCACAAAGCCTGACCCCAGGCATGCTGGCCCACCAGCTCAGCGGAGGCGTGACCACGAGCCGAGACCAGTGGAAGGTCTGTGTGGATGTTAAACAGTTTACCCCTGAGGAACTGACCGTCAAGACCAAGGATGGAATGGTGGAAATCAGTGGAAAACACGAGGAGCGCAGAGACGAGCATGGATACATCTCCAGATGTTTCACCAGGAAATACGCtctCCATCCTGGAGTAGACACTGAGAAGGTcacctcctccctctctcctgaGGGTGTGCTCACCATCGAAGCTCCCATACCTAAACCCGTCATTCAGGATGCTGAGAAGTCCATCCCTGTGACTAAAGCCAAAAAATGAATTTAGGATTTAACCTCTCCATTGAGCTTCTGATCAGACTGAGTGATGATAGATTTATAGATGATAAATTTAAAACTGGCCACTGTTCAGTTATTGATAAGTGGTTTCTAGTAGGGaatttttatgtaataaaagctaataaatatgaaa

Function

GO:

id name namespace
GO:0009408 response to heat biological_process
GO:0046685 response to arsenic-containing substance biological_process
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248605.2 True 807 mRNA 0.52 3 22835801 22838427

Neighbor

gene id symbol gene type direction distance location
LOC103047173 LOC108410854,LOC107582651 coding upstream 5723 22812700 ~ 22830078 (+)
c2cd3 NA coding upstream 23185 22785074 ~ 22812616 (+)
tas2r4 NA coding upstream 52152 22782092 ~ 22783649 (+)
rab38 rab38,rab38a,LOC103046565,LOC107570108,LOC107731817,LOC107558848 coding upstream 57496 22771799 ~ 22778305 (+)
ctsc ctsc,LOC107731820,LOC104952660,LOC107735775 coding upstream 65151 22763337 ~ 22770650 (+)
LOC103021718 LOC108410847,LOC107758659,LOC107582611,LOC107592752,LOC107752380 coding downstream 23951 22862378 ~ 22867050 (+)
LOC103022249 NA coding downstream 42410 22880837 ~ 22893099 (+)
LOC103042381 LOC107694033 coding downstream 57887 22896314 ~ 22903817 (+)
LOC103042688 LOC107694033,LOC107592755,LOC107752375,LOC105911027 coding downstream 66348 22904775 ~ 22909631 (+)
LOC103043000 LOC107694033,LOC107592755,LOC107752375,LOC105911027 coding downstream 72524 22910951 ~ 22917840 (+)
G5619 NA non-coding upstream 11735 22822871 ~ 22824066 (+)
G5595 NA non-coding upstream 128032 22707113 ~ 22707769 (+)
G5455 NA non-coding upstream 490019 22344076 ~ 22345782 (+)
G5416 NA non-coding upstream 620750 22214411 ~ 22215051 (+)
G5379 NA non-coding upstream 638316 22169112 ~ 22197485 (+)
G5628 NA non-coding downstream 66711 22905138 ~ 22905655 (+)
G5640 rab34a,LOC103022556,LOC108443499,LOC107758713,LOC107672399,LOC107657101 non-coding downstream 111400 22949827 ~ 22951675 (+)
G5642 LOC108443500 non-coding downstream 117633 22956060 ~ 22958499 (+)
LOC111192542 NA non-coding downstream 129564 22967991 ~ 22974947 (+)
G5657 NA non-coding downstream 187715 23026142 ~ 23026556 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other upstream 77588 22708912 ~ 22758213 (+)
LOC103041654 chordc1,LOC108412466 other upstream 161817 22642610 ~ 22673984 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other upstream 311055 22407556 ~ 22524746 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other upstream 680875 22056522 ~ 22154926 (+)
G5026 NA other upstream 1836601 20983707 ~ 20999200 (+)
G5620 LOC107694033,LOC107752375,LOC107592755,LOC105030986 other downstream 64339 22902766 ~ 22923081 (+)
G5646 NA other downstream 125633 22964060 ~ 22964924 (+)
LOC103024639 NA other downstream 242964 23081391 ~ 23156366 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other downstream 474085 23312512 ~ 23351306 (+)
G5871 NA other downstream 993809 23832236 ~ 23833830 (+)

Expression


Co-expression Network