LOC103022249


Basic Information

Item Value
gene id LOC103022249
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22880837 ~ 22893099 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248607.3
TGAGACACTGATGACCTTGCATGAGTTCTCTGGACACAGGAAACAAACTAGGATGTACGTTTTTTATTCATTCCTTTTTCTGGCTTCTCTGTCGAGGATCGCAGCCAGGGCAGAATGGTGCTACCAGTCCCAGGTCACTTGTGAGCACAAATGCGAAGgACCAAGCGAATGGCCAAAAATAGCATCAGCCTGTGGAGGTAATAAACAGTCACCTATTAATATTGTGACAAAGAAGGTTAAGATGGAAGGATCCCTCCCAGCGTTTAAATTTCAAGGCTACAAAGAGACGTTCCACAGTTTTATCACAAACAATGGCCACACAGTCAAGGTCAACTTGTCGGGAGCTGCTCAGATTAATGGAGGAAGTTTAGGATCAACGTACAAAGCAATGGAAATCCATTTCCACTGGGGGAAGAACGGTGAACATGGATCAGAGCACACCATCGACGGAGAGCAGTACCCTATGGAGaTGCATCTTGTTCACATAAAGAGCACATACTCATCTGTAGAGGAAGCTGTTAAAGACCCCTCTGGTGTGGCGGTTTTTGGATTTTTGTACGAGGAAGCTGAAAGCTCAAACCAAAAATATGATCCCATCATAAACGCTCTAGTGAATATCCCATTCCCTGATAACAGAACATCCCTTCAGTCCCTGTCTTTGGACTCGCTCATCCCAGACCAAACTATGCTGAGCAGCTACTTCCGCTACGAGGGCTCGCTCACCACGCCCGACTGTGCAGAGTCAGTCATCTGGACAGTGTTCGAACAGACCATCCCGCTCAGCAGGAATCAACTGTCTACATTCTCAACTCTCCAGTTTGACAATGAAACCGCCATGGTGGGAACGTTTCGCCCGGTGCAGCCGCTGAACAGTCGAGAAGTCTTTTACTCTGGTTGCACTGTTGTATCTGTTAACGCTGTACTGGTTGTTGGTACCATTTTCACCACCATTTTTACTCTGAACACCATAAAATAAGTTACATACTGTACTAACTGTGATCATCTTAGTATggattttgttatttcaatgctttttacattcttttattctttgttACAACAGACgtcacatattttatattttaaacagttttaacagtgtatttttaaataattaattaatataataatagtaatatatttACAGACTTCCTTTTAGCACTGTGCCTTTTTTAGtgttatatatttctgtatattgtAATGCTTTAATGCATTTTCTGCTCTTTTCAACATATAATGTGCCTTGCTACAGTCCTGTTGTAGTGCTGTTAATATGGTGGACAACATTAAAGTATTGAACTAGAAAGTA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K18246 CA4; carbonic anhydrase 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248607.3 True 1309 mRNA 0.41 8 22880837 22893099

Neighbor

gene id symbol gene type direction distance location
LOC103021718 LOC108410847,LOC107758659,LOC107582611,LOC107592752,LOC107752380 coding upstream 13787 22862378 ~ 22867050 (+)
LOC103047689 NA coding upstream 42410 22835801 ~ 22838427 (+)
LOC103047173 LOC108410854,LOC107582651 coding upstream 50759 22812700 ~ 22830078 (+)
c2cd3 NA coding upstream 68221 22785074 ~ 22812616 (+)
tas2r4 NA coding upstream 97188 22782092 ~ 22783649 (+)
LOC103042381 LOC107694033 coding downstream 3215 22896314 ~ 22903817 (+)
LOC103042688 LOC107694033,LOC107592755,LOC107752375,LOC105911027 coding downstream 11676 22904775 ~ 22909631 (+)
LOC103043000 LOC107694033,LOC107592755,LOC107752375,LOC105911027 coding downstream 17852 22910951 ~ 22917840 (+)
LOC103021948 LOC107694033 coding downstream 17926 22911025 ~ 22925516 (+)
LOC103023064 zgc:174895,LOC103023064,LOC107672400,LOC107657114,LOC107752376,LOC105911024,LOC108278204,LOC106612798,LOC108443501 coding downstream 47630 22940729 ~ 22946604 (+)
G5619 NA non-coding upstream 56771 22822871 ~ 22824066 (+)
G5595 NA non-coding upstream 173068 22707113 ~ 22707769 (+)
G5455 NA non-coding upstream 535055 22344076 ~ 22345782 (+)
G5416 NA non-coding upstream 665786 22214411 ~ 22215051 (+)
G5382 NA non-coding upstream 686954 22192933 ~ 22193883 (+)
G5628 NA non-coding downstream 12039 22905138 ~ 22905655 (+)
G5640 rab34a,LOC103022556,LOC108443499,LOC107758713,LOC107672399,LOC107657101 non-coding downstream 56728 22949827 ~ 22951675 (+)
G5642 LOC108443500 non-coding downstream 62961 22956060 ~ 22958499 (+)
LOC111192542 NA non-coding downstream 74892 22967991 ~ 22974947 (+)
G5657 NA non-coding downstream 133043 23026142 ~ 23026556 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other upstream 122624 22708912 ~ 22758213 (+)
LOC103041654 chordc1,LOC108412466 other upstream 206853 22642610 ~ 22673984 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other upstream 356091 22407556 ~ 22524746 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other upstream 725911 22056522 ~ 22154926 (+)
G5026 NA other upstream 1881637 20983707 ~ 20999200 (+)
G5620 LOC107694033,LOC107752375,LOC107592755,LOC105030986 other downstream 9667 22902766 ~ 22923081 (+)
G5646 NA other downstream 70961 22964060 ~ 22964924 (+)
LOC103024639 NA other downstream 188292 23081391 ~ 23156366 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other downstream 419413 23312512 ~ 23351306 (+)
G5871 NA other downstream 939137 23832236 ~ 23833830 (+)

Expression


Co-expression Network