LOC103030447 (LOC108411681)


Basic Information

Item Value
gene id LOC103030447
gene name LOC108411681
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23365477 ~ 23376453 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248636.2
GAGGCGGCGCGGTGTGACGGCGGCTCGGCGGTGCTGTGCTGGCGGGGTGATGGGGGAGATgggcggcggcagcagcagcaaaaaCAAGgCATCAGTGTCGCTGGTGGAGAAGAGATATCTGTCCAGTAGACACAGGTTTCTGTCTCTCCGGGCTGGACTCGTTCAGAACAGTCCTTTCAGGCAGCGGAGTGTCCCACACACTAAATCTCACATCTGTGAAGAAGCCCAGAGCACAGAGATAAATCTTCTGCCCACCTCCACCTCAATGTTCCTGCCTGAGTTCCCTCAACGAGGGGAAGGAAATATGCATTTACAGATTACTGGTTTTATAGCTAAAGGCTCATTCGGTCCTATTCTAAAGGTAAAGGACTGGGCAAAAGACAAGGCCTTTGCTATTAAGGTTTTACCCAAGTCTGAGGTTTTGAGACTTGGGGTTCTGGAGCAGTCCAAAGAGGAGGTTATTATCCAGCGGCAGCTCAGGCACCCTTTTCTCCTCAGTCTGGAGGACTGTTGGCAGAGCCAGCGTCATCTCTTCATCATGTGTGAATACTGCAGCACTGGAGATCTGTACACGTACTGGACACTGACCGGCCAGTTTGATGAGAAGGAGATACGGGTATTTGCTGCTGAACTGGGCAGTGCTTTAGGTTTTCTGCATGACTTCGGGATCATTCACAGAGATGTGAAGATGGAGAACATCCTTTTAACAGAGCAGGGTCACCTCCGGCTGGCGGATTTCGGCCTGTCTCGTCGACTCGAGTGTGGAGAAAGAGCGTTCACAATCTGTGGAACGATACAGTACATGGCTCCTGAGGTGTTGAGTGGAGGTCCGTACGGTCATGCTGCAGACTGGTGGTCTCTAGGCATTTTGATATATGCACTGGCAGCAGGAGAGtttcctgttccaccAGAAGCAGACCACAGCAATATGTTGACCACGGTGACTGACCACCTGTATGAGATGCCTTCAGGCTTCAGTCCTGGACTGGCTCTGCTTCTTACCGAGCTTCTGTGTAAGAATCCCACGTGTCGCCTCCGCAGCCTGGAGCGCTACAAAAGCCAGAGATTCTTCTGTGGGGTCTCCTTTGACTCACAACTGCTGACGAAGGCTCCTGTTCAGCCCATCCTTCAGCTGAAGGACCACCCGGAGCGGCTGGAAAAATCAGCACGGGGGTTGGCGTTCGAGCAGCTGCAGAATTTTGACTGTGATCTTCTCAACTCTCCAACAGACGTTTCCCAGACCCTTCTGAACACTGGAATGGACCAGGATGCTTCAGGTTCTTGAGGAGAGGAGGTAAGAACCCGAAAGAAGGGTTCTCAGCTTTCCTCGACTGCTGCTACAGAAGAACCAAAACCAAATAACTCATGAGAATTTAATACTCAGTTGTGAAACGGGCAGGCAAGCTCAGAAATTCACAGGTAGGGGTGAAACCCAGCAGTTAAGCAATAAATTCAGAGACATTAGTTATTACACTAAAAACTTATTCAGGAGAGACTAGGTTTACCTGGGGAGGTGCAGTAATGTATTTTTCTACAGGATGTCAGGAAAATATGTGAtttattcacactggagaagAAATGTCAGCATAAATGACTGAGATGAGAGCGGCTACTCGATTTATGCACTGCCatcctctaaaaaaaaaataataataaaataatgaaaatcaaTATTATAACCCACTTATAATAGTAAGgaaatttaagttaaaaaattAGCTGCTACATGTTGATAAcaagtaaataatataaaatataaaagaataaaagctaTTCTACACAATCACACAGCCTCTGAGGAGTCTTGGCTCGTcttttgaatttaattaaattgtaagTGTTAAGATGGCTGAAGGACTTGAGGTGTCAGTGCATTGAAAATGTAGCTAAATGCTAAACGCGCCCTTGAGCTCCTCCGTAATTCAGAAAAAATTGTCTGGAATCTTGAGATGTGAGTAAAAAAATCACTTAGTCTAGtaaagtttagtaaaaaaacactaaggATATCTggtaataattacattacccCACCTCCCCTAGAAAGACATAAGTTAGATAAAGGATTTTCTGAATAGCACATGATCACAGCAATAAATTAGTACAGGAGTCAGTAGTGTTTTATAGCAAGTAGCAGACAATATATCACAGTGTATCTATCAGGGCACTACCTGTGTAAGGAACCGCATTTAAAATAACTGGAATAGCAGTCAATTTTGTTCTTATAGCATAAAactttgtttacattttatatcatGCTTCATTTACATGTAATTTCTAGTGTTTACACTTGGACAAAAAGGTggacatattttacattttggtttagaataggtctatggacCATACTAAATATGttcattaagttttttttacacagaatcactctcacataaagagatatCAGCAGCTCTATTTCTACCAGGTTCAgaccctttcagaatgagccgtttaggGGCTCTGTcacatttatgcaaataagctgttgctggccacgccccatgtttaAGCTAAGTGTTTGCCACACATTCTTACATCCTCCTCATTTGCTaacttgccacggacagtaggtacagattcctccctcggACGAAGTCTGTTGggtaatcctgctgtgtactgtctgagattCTCAACCAGCAAACCAAAATTGCTGAACTGGTGTTTCTTTAACGGTGTTTCTGATTTTAAAGTACGACactaaatgtttacattttaaaaaagaaacggAGGCTTTTGTTAATGTGCAATGTTTCAACTTTAACCCTCTATGGTATGAAtgctattgtattttattttatttttttgaagaaaATAAATCTCAATCTCAAAGATA

Function

NR:

description
PREDICTED: cAMP-dependent protein kinase catalytic subunit alpha-like

GO:

id name namespace
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K17529 SGK494; uncharacterized serine/threonine-protein kinase SgK494

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248636.2 True 2833 mRNA 0.43 12 23365477 23376453

Neighbor

gene id symbol gene type direction distance location
LOC103030129 aldoca,LOC108415199,LOC108277446,LOC107727913,LOC107661107,LOC107714247 coding downstream 4476 23353906 ~ 23361001 (-)
hnf1b hnf1b coding downstream 63933 23286776 ~ 23301544 (-)
synrg synrg coding downstream 93480 23208761 ~ 23271997 (-)
LOC103023685 LOC108443500 coding downstream 400572 22955908 ~ 22964905 (-)
LOC103022556 rab34a,LOC103022556,LOC108443499,LOC107758713,LOC107672399,LOC107657101 coding downstream 411457 22947594 ~ 22954020 (-)
kiaa0100 kiaa0100,LOC107727920 coding upstream 1618 23378071 ~ 23409065 (-)
glod4 glod4 coding upstream 33774 23410227 ~ 23415554 (-)
nxn nxn,typx coding upstream 46224 23422677 ~ 23523047 (-)
txndc17 txndc17,txd17 coding upstream 148523 23524976 ~ 23528258 (-)
LOC103034584 caln1,LOC103034584,LOC108443712,LOC107659935,LOC107582596,LOC108277467,LOC107554278,LOC107672359 coding upstream 258857 23635310 ~ 23715646 (-)
G5723 NA non-coding downstream 367105 22992944 ~ 22998372 (-)
G5705 NA non-coding downstream 368802 22954355 ~ 22996675 (-)
G5691 NA non-coding downstream 445431 22904721 ~ 22920046 (-)
G5947 NA non-coding upstream 201001 23577454 ~ 23582204 (-)
G5948 NA non-coding upstream 205909 23582362 ~ 23583884 (-)
G5949 NA non-coding upstream 247038 23623491 ~ 23671222 (-)
G5970 NA non-coding upstream 465371 23841824 ~ 23875442 (-)
G5975 NA non-coding upstream 510985 23887438 ~ 23888877 (-)
srsf1 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234 other downstream 14255 23344496 ~ 23351222 (-)
LOC103028862 dynll2a,LOC107554284,LOC103397138 other downstream 25742 23335066 ~ 23339735 (-)
G5667 c2cd3 other downstream 567187 22796345 ~ 22798290 (-)
G5565 NA other downstream 737295 22607769 ~ 22628182 (-)
G5407 NA other downstream 1207292 22155785 ~ 22158185 (-)
LOC103033507 fam222bb,LOC107661104 other upstream 172271 23548724 ~ 23560500 (-)
LOC103035104 LOC103035104,LOC108443709,LOC108277991 other upstream 467802 23844255 ~ 23856637 (-)
hip1 hip1,LOC107659933 other upstream 539599 23916052 ~ 23978227 (-)
G6118 NA other upstream 801317 24177770 ~ 24179649 (-)
G6134 farsb,syfb,LOC106581314 other upstream 881031 24257484 ~ 24261652 (-)

Expression


Co-expression Network