nxn (nxn,typx)


Basic Information

Item Value
gene id nxn
gene name nxn,typx
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23422677 ~ 23523047 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248644.3
agggttttttttttatttggctgtattaaaataattacatatgtagAAATGTCCACAATTTCAGTGTCactgtcattctctctctctagaaTTCTtatatttagccaaatgtttttggattcTACAGAACTTTACCACTACTAAATTTAAGAACTACTACtatttactttttaagtttACAGTTTTCTAActgtttataaacttttttcaaCTTTATTGACGTCTATCTTATTGTAGAGGTGTAGAAACGTATTATTAAACGGAGGGCGCAGTACCGCGGTTCCGCCGGTAGGTGCCGCCAGATCCGTATTTTTTCTAGTTAGGTGGGAGCAGCCAATCAACGGTGGGCTAAAAACAGAGCGCATTCCTCAACAGCGTTTCAGTGGCCCGTGCCCACGCGCTCCGCACCGTCGGTGCTCTTAACGGGGGAGtccacgtacacacacacacacacacacacacacacacacacttatacacgcCGATACACACCGCGGACAGCAGGAATACTAGGGTTCTCTCCGCTCCAGGTCGGGGGTCAGCGTGTCCGGAGAGACGGGCCATGTCGGAGCTGCTGGTGGATCTGCTGGGGGAGCGGCTGGTGAACGGGGAGAAAGCCGAGCTGGACGTGCAGGCGCTGGGCAGCGGGCTGGCGCTGGTCGGCCTGTACTTCGGCTGCAGTCTGAACGCTCCGTGCAGGCAGTTCAACAGCAGCCTGGCCGAGTTCTACAGCAAGTTCAAGAAATGCTCCGAGCACAAAGACCAGCTGGAGATCGTCTTCATCTCCTCAGACCAGGACCAGAAGCACTGGCAGGACTTCCTGCAGGAGATGCAGTGGCCGGCTCTGCCTTTCAAAGACCGGCACAAGAAGATGAAGCTGTGGAACAAGTACAAGGTGACGAGTATTCCCTCGCTGGTGTTCATTGATGCCACCACAGGGAAGGTGGTGTGTCGGAACGGATTACTCGTGGTGAGAGACGACCCTAAAGgtttAGAGTTCCCCTGGGGTCCGAAGCCGTTTGCGGAGGTTGTGGCCGGACCCTTACTCTGGAACAATAGGCAGACGGCAGGCAGCAGCTCTTTGGAGGGCTCCTATGTGGGGGTGTACTTTTCTGCACACTGGTGCCCTCCCTGCCGCAGTCTGACCCGAGTGCTGGTGGAGTCCTACCGCAAAGTGAAGGAATCGGGACACAAGTTTGAGATTGTATTTGTTAGTGCTGACAGGTCAGAAGACTCCTTCACACAGTATTTTAGTGAAATGCCCTGGCTGGCTGTTCCGTACACAGACGAGGCCCGGAGGTCTCGCCTCAACAGACTCTACGGCATTCAAGGCATCCCTACACTGATCCTGCTGGACACGGAGGGTCACATGATCACGCGGCAGGGCCGGGTGGAGGTTCTGAATGACCTGGAGTGTCGGCTGTTTCCATGGCACCCACGGCCGGTGCTGGAGCTCAGCGAGTCCAACGCCGTGCAGCTCCACGAGGGACCCTGCCTCGTACTGTTTGTGGatgCTGAGGAAGAGGGCGAGCTGGAGCCGGCCAAGGAGCTGATCCAGCCAATTGCAGAGAAGATCATGGCCAAGTACAAGGCCAAGGATGAGGAGACCCCGCTGCTTTTCTTCGTGGCcggagagGACGACATGAGTGACTCGCTGCGAGATTACACCAACCTGCCCGAGGCTGCACCTCTGCTGACCATCCTGGACATGTCTGCTCGCGCCAAATACGTCAAAGACGTGGAGGAGATCACGCCGGCTGTGGTGGAGCAGTTCGTCACTGACTTTCTGGCTGAGAAGCTCAAACCAGAGCCCATTTAACGCAGAGCAGAAAGCCTGGACAGCACTACACCTCCCTCCAGACCCCTGACCTTCAGCCCCCTGACCTCCGGACCCCTCTCCCCGCTCTTCCAGTGAGACTGTTTAAAAGAGAAGCCTCACTTTGTACTGATATTATCCCCTCTTccccttttttaaaacaaaatctccCACCCTTCTTCCTGGAGTTGTCGTTCTCCTCATTCTCCTGCTCCTCCTGCTCTCCTGTGGTGCCTTGCGTTTACATCCTGGATGATAAAAATCTGGTTAAAAAAactcagatatttttttttggcattcaTAGAACTTCATAGCATAGATGAAACCCTTCACAGCTGCGGCAGATTGTTTTGGTTATTCAGAGCaactttttattgcttttatttgattagtaaaaattatacagcttttattttcagatatcgttttaaagaagaataaaacataacataagAGAGTCGTATGGTTGAGATAAACAGTGCACATTTCTTTTGCAGCTCCTTCACCTGATCACCTGATTCTCCTCACTAGGCTGTAGTTCTCTCCTTATGGGTGCTGATtattatgatgattattatgCACATGTGGACAAACTGATGCTGATATCtctgtttaaaagaaaaaaacaaaagtctaTTCTTTTGCGTGGCAGCCGTTTTTATGCAGTTACTTTTATTGATCCAGAACCTTGTTGATACTTGATGTGATGATAATGATGTATTAAGACTGATTGTTTTCCATCTCcagacacatttttttaagtggatTTTCTGTGAAGGTCCCCTCTATTAAAGCAGTTGGCAGATGCTGACGGGACAGAATAGCATTATTAGCACGTTTCCATACTAAATGTAGAGGCGCTTTAGAGCGTGCACAGCTTCAGTCTCTCCTTCGTTGTGTTTCTGATGAGCCCTGGCCATTAAAACTCACTGTCTAGCTCTG
>XM_015605669.2
TATATCtagaaagggttttttttttatttggctgtattaaaataattacatatgtagAAATGTCCACAATTTCAGTGTCactgtcattctctctctctagaaTTCTtatatttagccaaatgtttttggattcTACAGAACTTTACCACTACTAAATTTAAGAACTACTACtatttactttttaagtttACAGTTTTCTAActgtttataaacttttttcaaCTTTATTGACGTCTATCTTATTGTAGAGGTGTAGAAACGTATTATTAAACGGAGGGCGCAGTACCGCGGTTCCGCCGGTAGGTGCCGCCAGATCCGTATTTTTTCTAGTTAGGTGGGAGCAGCCAATCAACGGTGGGCTAAAAACAGAGCGCATTCCTCAACAGCGTTTCAGTGGCCCGTGCCCACGCGCTCCGCACCGTCGGTGCTCTTAACGGGGGAGtccacgtacacacacacacacacacacacacacacacacacttatacacgcCGATACACACCGCGGACAGCAGGAATACTAGGGTTCTCTCCGCTCCAGGTCGGGGGTCAGCGTGTCCGGAGAGACGGGCCATGTCGGAGCTGCTGGTGGATCTGCTGGGGGAGCGGCTGGTGAACGGGGAGAAAGCCGAGCTGGACGTGCAGGCGCTGGGCAGCGGGCTGGCGCTGGTCGGCCTGTACTTCGGCTGCAGTCTGAACGCTCCGTGCAGGCAGTTCAACAGCAGCCTGGCCGAGTTCTACAGCAAGTTCAAGAAATGCTCCGAGCACAAAGACCAGCTGGAGATCGTCTTCATCTCCTCAGACCAGGACCAGAAGCACTGGCAGGACTTCCTGCAGGAGATGCAGTGGCCGGCTCTGCCTTTCAAAGACCGGCACAAGAAGGCCTCCTGCCCAGATGTGTGCCTACCAGGGCTTCCTGAGCCTGATATGAAGCTGTGGAACAAGTACAAGGTGACGAGTATTCCCTCGCTGGTGTTCATTGATGCCACCACAGGGAAGGTGGTGTGTCGGAACGGATTACTCGTGGTGAGAGACGACCCTAAAGgtttAGAGTTCCCCTGGGGTCCGAAGCCGTTTGCGGAGGTTGTGGCCGGACCCTTACTCTGGAACAATAGGCAGACGGCAGGCAGCAGCTCTTTGGAGGGCTCCTATGTGGGGGTGTACTTTTCTGCACACTGGTGCCCTCCCTGCCGCAGTCTGACCCGAGTGCTGGTGGAGTCCTACCGCAAAGTGAAGGAATCGGGACACAAGTTTGAGATTGTATTTGTTAGTGCTGACAGGTCAGAAGACTCCTTCACACAGTATTTTAGTGAAATGCCCTGGCTGGCTGTTCCGTACACAGACGAGGCCCGGAGGTCTCGCCTCAACAGACTCTACGGCATTCAAGGCATCCCTACACTGATCCTGCTGGACACGGAGGGTCACATGATCACGCGGCAGGGCCGGGTGGAGGTTCTGAATGACCTGGAGTGTCGGCTGTTTCCATGGCACCCACGGCCGGTGCTGGAGCTCAGCGAGTCCAACGCCGTGCAGCTCCACGAGGGACCCTGCCTCGTACTGTTTGTGGatgCTGAGGAAGAGGGCGAGCTGGAGCCGGCCAAGGAGCTGATCCAGCCAATTGCAGAGAAGATCATGGCCAAGTACAAGGCCAAGGATGAGGAGACCCCGCTGCTTTTCTTCGTGGCcggagagGACGACATGAGTGACTCGCTGCGAGATTACACCAACCTGCCCGAGGCTGCACCTCTGCTGACCATCCTGGACATGTCTGCTCGCGCCAAATACGTCAAAGACGTGGAGGAGATCACGCCGGCTGTGGTGGAGCAGTTCGTCACTGACTTTCTGGCTGAGAAGCTCAAACCAGAGCCCATTTAACGCAGAGCAGAAAGCCTGGACAGCACTACACCTCCCTCCAGACCCCTGACCTTCAGCCCCCTGACCTCCGGACCCCTCTCCCCGCTCTTCCAGTGAGACTGTTTAAAAGAGAAGCCTCACTTTGTACTGATATTATCCCCTCTTccccttttttaaaacaaaatctccCACCCTTCTTCCTGGAGTTGTCGTTCTCCTCATTCTCCTGCTCCTCCTGCTCTCCTGTGGTGCCTTGCGTTTACATCCTGGATGATAAAAATCTGGTTAAAAAAactcagatatttttttttggcattcaTAGAACTTCATAGCATAGATGAAACCCTTCACAGCTGCGGCAGATTGTTTTGGTTATTCAGAGCaactttttattgcttttatttgattagtaaaaattatacagcttttattttcagatatcgttttaaagaagaataaaacataacataagAGAGTCGTATGGTTGAGATAAACAGTGCACATTTCTTTTGCAGCTCCTTCACCTGATCACCTGATTCTCCTCACTAGGCTGTAGTTCTCTCCTTATGGGTGCTGATtattatgatgattattatgCACATGTGGACAAACTGATGCTGATATCtctgtttaaaagaaaaaaacaaaagtctaTTCTTTTGCGTGGCAGCCGTTTTTATGCAGTTACTTTTATTGATCCAGAACCTTGTTGATACTTGATGTGATGATAATGATGTATTAAGACTGATTGTTTTCCATCTCcagacacatttttttaagtggatTTTCTGTGAAGGTCCCCTCTATTAAAGCAGTTGGCAGATGCTGACGGGACAGAATAGCATTATTAGCACGTTTCCATACTAAATGTAGAGGCGCTTTAGAGCGTGCACAGCTTCAGTCTCTCCTTCGTTGTGTTTCTGATGAGCCCTGGCCATTAAAACTCACTGTCTAGCTCTG

Function

symbol description
nxn Predicted to enable protein-disulfide reductase (NAD(P)) activity. Predicted to be involved in circulatory system development; negative regulation of Wnt signaling pathway; and negative regulation of protein ubiquitination. Predicted to act upstream of or within Wnt signaling pathway and cell differentiation. Predicted to be located in cytosol and nucleus. Is expressed in several structures, including basal plate midbrain region; brain; immature eye; lens; and neural plate. Human ortholog(s) of this gene implicated in Robinow syndrome. Orthologous to human NXN (nucleoredoxin).

NR:

description
PREDICTED: nucleoredoxin

GO: NA

KEGG:

id description
K17609 NXN; nucleoredoxin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248644.3 False 2758 mRNA 0.49 8 23422677 23523036
XM_015605669.2 True 2814 mRNA 0.49 9 23422677 23523047

Neighbor

gene id symbol gene type direction distance location
glod4 glod4 coding downstream 7123 23410227 ~ 23415554 (-)
kiaa0100 kiaa0100,LOC107727920 coding downstream 13612 23378071 ~ 23409065 (-)
LOC103030447 LOC108411681 coding downstream 46224 23365477 ~ 23376453 (-)
LOC103030129 aldoca,LOC108415199,LOC108277446,LOC107727913,LOC107661107,LOC107714247 coding downstream 61676 23353906 ~ 23361001 (-)
hnf1b hnf1b coding downstream 121133 23286776 ~ 23301544 (-)
txndc17 txndc17,txd17 coding upstream 1929 23524976 ~ 23528258 (-)
LOC103034584 caln1,LOC103034584,LOC108443712,LOC107659935,LOC107582596,LOC108277467,LOC107554278,LOC107672359 coding upstream 112263 23635310 ~ 23715646 (-)
LOC103036157 tyw1,LOC108443711,LOC107727925,LOC108278267,LOC107672403 coding upstream 217585 23740632 ~ 23826179 (-)
LOC103035940 NA coding upstream 316094 23839141 ~ 23841427 (-)
LOC103040911 NA coding upstream 537402 24060449 ~ 24063326 (-)
G5723 NA non-coding downstream 424305 22992944 ~ 22998372 (-)
G5705 NA non-coding downstream 426002 22954355 ~ 22996675 (-)
G5691 NA non-coding downstream 502631 22904721 ~ 22920046 (-)
G5947 NA non-coding upstream 54407 23577454 ~ 23582204 (-)
G5948 NA non-coding upstream 59315 23582362 ~ 23583884 (-)
G5949 NA non-coding upstream 100444 23623491 ~ 23671222 (-)
G5970 NA non-coding upstream 318777 23841824 ~ 23875442 (-)
G5975 NA non-coding upstream 364391 23887438 ~ 23888877 (-)
srsf1 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234 other downstream 71455 23344496 ~ 23351222 (-)
LOC103028862 dynll2a,LOC107554284,LOC103397138 other downstream 82942 23335066 ~ 23339735 (-)
G5667 c2cd3 other downstream 624387 22796345 ~ 22798290 (-)
G5565 NA other downstream 794495 22607769 ~ 22628182 (-)
G5407 NA other downstream 1264492 22155785 ~ 22158185 (-)
LOC103033507 fam222bb,LOC107661104 other upstream 25677 23548724 ~ 23560500 (-)
LOC103035104 LOC103035104,LOC108443709,LOC108277991 other upstream 321208 23844255 ~ 23856637 (-)
hip1 hip1,LOC107659933 other upstream 393005 23916052 ~ 23978227 (-)
G6118 NA other upstream 654723 24177770 ~ 24179649 (-)
G6134 farsb,syfb,LOC106581314 other upstream 734437 24257484 ~ 24261652 (-)

Expression


Co-expression Network