LOC103033930 (wbscr17,LOC108411682,LOC107714690,LOC107582595,LOC107727938)


Basic Information

Item Value
gene id LOC103033930
gene name wbscr17,LOC108411682,LOC107714690,LOC107582595,LOC107727938
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23600418 ~ 23620855 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248648.3
GGAGGAGGAGCGGGTCCGGGTTTATCGGGGCTGATTAGGAGGAGAGAAAAGGGGGACAGGGGCTCTGAGGGCGAGCCGCTCTCCGTCCTCAGGGGAGTTAAGGACGCGGCTGGAGGAGGTCGACACAACGCCGTGGGTCTGGTGCTGATTCTGGGTGGTTCTGACTGAAGCTGAGGGAGATGTTTGTGCGGTTCCCCACATTTCCACCGGAACGCTCTGCTGCTCTTCTCTCCAGCCTCCGACCATCACTCCTTCTCCttcgccgccgccgccgccgccgagGCTCTGATGATGATGTGACCTCTGCGTTCCTCTCCTTTAGCCAGGTGTTCCAGAGAACCACACTGCTCATTTTCTCCTCCAGCATGTGAAGAGCAGACTGAACTGTGTGGGCACGACTGATGGAGAAGCTGGTCTGTTTGTAGGAGCAGAAATGCGTCTCAGCAGAACGACATGATACGACTCATTGGGTTCAGGACGCTAAAGTCATTGATGGCTTTTGTGATGAGGAGATGGAAAATCCTGCTTGTGCTCAACGCCTTCGCCGTGGCCGGTTTCCTGACCTTCTGGGGCAAGTGTAATATCCGGACAAGCCGAGGCAGCGGTCAGCAGGTGCCCACTGACACCAGGGGGCAGACGCGCTTGAACGGGTCTGCTTTGGACAGTGGCATCATTCAGGAGGTCCTGCTGAAGAGACTTGGCTCGCTAGAAGATGTAGTCTACAGACAACTTAATGGTTTGTCCAAGTCTCTTGGTCTCATTGAGGGCTTTGGAGGCCGGGGCAGAGGAGGCTTGCCTGCCACCCTGAATCCTATGGAGGAGAAGGAAGCCAAGTATCTGCGGGAGAAGTATGGCTACAATGCGTTCCTGAGTGACAGGATATCTCTGGATAGGTCCATCCCAGACTACCGCCCCAGCAAGTGCAAGAAGGCCTATTATCCCAGAGACCTGCCACAGATCTCCCTCATCTTCATCTTCGTCAATGAGGCGCTGTCGGTCATCTTGCGCTCCGTCCACTCGGCCGTCAATCACACTCCCGCCCACCTACTCAAAGAGATCATCCTGGTGGACGACAACAGCGATGACGaGCAACTGAAAGGGCCTCTGGAAGAGTACGTCAACAAACGCTACCCAGGCCTCGTGAAAATCGTGCGCAATCAGAAGAGGGAGGGTCTGATCCGTGCTCGTATCGAGGGCTGGAAGGTGGCTACAGGAGAAGTGACGGGATTTTTTGACGCCCATGTGGAGTTCACTCCTGCCTGGGCTGAACCAGTTTTGTCCAGGATCAAGGAGAACCCCAAGAGGATCATCCTGCCCTCCATAGATAACATTAAAGACGACACTTTTGAGCTGGAGCGCTACGAAAACTCTGGTCATGGATTCAACTGGGAGCTCTGGTGCATGTACATCAGTCCTCCCAAACAGTGGTGGGATGAAGGAGACACTTCTGCACCCATCAGGACACCTGCGATGATAGGCTGCTCGTTCGTGGCCAACCGGGAATACTTCGGAGAGCTGGGCTTGCTGGACTCAGGGATGGATGTCTATGGAGGAGAGAATATAGAGCTCGGAATCAGGGTTTGGCTGTGTGGAGGCAGTATGGAGGTCCTGCCTTGCTCCAGGGTGGCCCACATTGCCAGGACGAAAAAGCCGTACCACAGTAACATCGCCTTCCACACCAGGCGCAATGCACTGCGCGTAGCGGAGGTGTGGATGGACGAGTACAAGTCAAATGTCTACCTGGCCTGGAACATTCCTATGGAGAACCACGGCATTGATTATGGTGATGTATCAGAGCGTGTGGCGCTAAGAAACAACCTCCAGTGCAGGAACTTCGAGTGGTACCTCGACAACATCTACCCTGAGATGAGGAGATATAACAGCACTCTGTTTTACGGGGAGATTCGCAACATCAACGTGACCCGTCTGTGTGTGGACCAGGGCGTGAAGGAGAACCACACGGCGACCCTCCACCCCTGCCATGGCTGGGGCCCTCAGCTGGGTCGCTACACTAAGGAGGGCTTCCTGTTTCTGGGGCCGCTGGGCAGCACCGGGGAGGACACGCGATGCGTGGTTGATGATCGGGTCAGCAGCTTCCCTCAGCTCGTCAACTGCGAGAAAATGTCCAATGTACTGCAGAAAACATGGAACTTTGCACAGAATGAATCAATCGTGAACCGAGCTACAGGACGCTGTCTGGAGGTGGTGCAGGCGAACGTCTACTTCGGCTACGCTCTGGTTCTGCGATCGTGCACGGGCCAGAGGTGGAACATCAGGAACACGATGAGGCAGCGACAGGGACAGTGAGTCAGTCCCCCTCGGACAAAGCCGACGCGCAGGGGAAGACGGGCGTCCTGCTGGGAACTGTCTGGATTACTTGAAATGATGAGTCCGGGTCGTGGATGAGTTGCTGCTTTGTGTTCTGGACTCCGGTGGAGCACAGCTGATAGGGCGTGAGTTGGTCTCAGGAGAGGAAGCATGAAACATTACTCTGGAGCATGTGGGGACCACTCCACACTCAAGTGGTCCTCTGTGAACAAGTTGTGACTGCCTGAAACCAAAACAAGACAATTCTGTGTTCTTCAAAAGGAGTGGTCTACTACTTCTGTACTGCAGGCGTCAGTATTAAAACAGGGCACATCCATCATCACTGAAAGAAGAAGAGGGAGGCCATGTGCACAGCAAAAAAATGACAACAGTTATTCACAGTGCTGCGAGACACGAtgcgccttgcacagggtgtggGATGATTAAATAATAGTAGTTTGAGCCTGTTGATCAAGTGTGAACAGAGTTGGGCAGTATTTAATTGGTTTTGAATCGTCATACCGCCTCAAAATATCACCagtgtcattttttaaaactaaaacacatcgaatacaaaattctgtctgtctgtctgtttgagTCACAGACCTCcactattagtttttttttttcactttcagatcttagtttttttttttcagattgtagTTTTTGATTTTCAGATAATAGTTTTCACCTTCAGACCTTAGTTTTtcacttttagattttttttccacttgtagtttttaacatttagatcatttttaaCTAGTttttcacatt

Function

NR:

description
PREDICTED: putative polypeptide N-acetylgalactosaminyltransferase-like protein 3 isoform X1

GO: NA

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248648.3 True 3090 mRNA 0.52 12 23600418 23620855

Neighbor

gene id symbol gene type direction distance location
LOC103034256 flot2,LOC108411680,LOC106581211,LOC105011286,LOC106612814,LOC107727921 coding upstream 20178 23564348 ~ 23580240 (+)
LOC103033181 LOC108411674,LOC108277977 coding upstream 56197 23531850 ~ 23544221 (+)
mrm3 NA coding upstream 178927 23417139 ~ 23421491 (+)
dusp14 dusp14 coding upstream 398401 23191090 ~ 23202017 (+)
tada2a tada2a,LOC107661114,LOC107755391 coding upstream 422859 23158514 ~ 23177559 (+)
gdpd1 gdpd1,LOC107672421 coding downstream 239190 23860045 ~ 23875492 (+)
clptm1 clptm1,LOC107715057,LOC107727917 coding downstream 360662 23981517 ~ 23996273 (+)
LOC103021374 LOC103021374,LOC108411837 coding downstream 381275 24002130 ~ 24010615 (+)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding downstream 391790 24012645 ~ 24038337 (+)
LOC111192623 LOC108411842 coding downstream 423542 24044397 ~ 24056710 (+)
G5827 glod4,LOC106612786 non-coding upstream 184831 23410459 ~ 23415587 (+)
G5804 NA non-coding upstream 246264 23352737 ~ 23354154 (+)
G5801 dynll2a,LOC107554284,LOC103397138 non-coding upstream 260644 23335116 ~ 23339774 (+)
G5768 synrg non-coding upstream 352399 23246132 ~ 23248019 (+)
G5762 NA non-coding upstream 385051 23213691 ~ 23215367 (+)
G5858 NA non-coding downstream 126104 23746959 ~ 23773367 (+)
G5861 tyw1,LOC108443711,LOC108278267,LOC107727925,LOC107716137,LOC107659914 non-coding downstream 163239 23784094 ~ 23824071 (+)
LOC103043618 NA non-coding downstream 206355 23827210 ~ 23828483 (+)
G5830 NA non-coding downstream 295216 23916071 ~ 23918384 (+)
G5892 hip1 non-coding downstream 306726 23927581 ~ 23930231 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 249112 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 444052 23081391 ~ 23156366 (+)
G5646 NA other upstream 635494 22964060 ~ 22964924 (+)
G5620 LOC107694033,LOC107752375,LOC107592755,LOC105030986 other upstream 677337 22902766 ~ 22923081 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other upstream 842205 22708912 ~ 22758213 (+)
G5871 NA other downstream 211381 23832236 ~ 23833830 (+)
LOC103035426 NA other downstream 219138 23839993 ~ 23847367 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other downstream 256144 23876999 ~ 23907474 (+)
LOC103027586 LOC108425877 other downstream 1791339 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 2419301 26040156 ~ 26046246 (+)

Expression


Co-expression Network