LOC103034256 (flot2,LOC108411680,LOC106581211,LOC105011286,LOC106612814,LOC107727921)


Basic Information

Item Value
gene id LOC103034256
gene name flot2,LOC108411680,LOC106581211,LOC105011286,LOC106612814,LOC107727921
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23564348 ~ 23580240 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248649.3
ATGGGCAGCTGTTTGACGGTTGGACCGAATGAAGCCCTGGTTGTATCAGGTGGCTGTACTGGGTCAGATGAGAAGATCTACGTGGTGGGCGGCTGGGCCTGGGCGTGGTGGTGcctgacagacacacaaagAATTACACTTGAGATTATGACTCTACAACCCAAATGTGAAAGTGTGGAAACGGCTGAAGGAGTGGCCATTACAGTCACAGGGGTCGCTCAGGTGAAGGTTATGACTGACAAGGACCTGCTGGCGATCGCTTGTGAGCAGTTTTTGGGTAAATCTGTTATGGAAATCAAAGGTGTGGTGCTGCAAACCTTGGAAGGCCATTTGCGCTCCATTTTAGGTACTCTGACAGTGGAGCAGATCTACCAGGACCGGGATAAGTTTGCCCAGTTGGTGCGTGAGGTGGCCGCCCCCGACGTCGGCCGCATGGGCATCGAAATCCTCAGCTTCACTATTAAAGATGTTTATGATAAGCTGGACTATCTGAGCTCTCTGGGGAAGACGCAGACGGCCGCGGTGCAGAGGGACGCAGACATCGGCGTGGCCGAGGCAGAACGGGATGCTGGGATAAAAGAAGCGGAGTGCAAGAAGGAAATGATGGATGTCACGTTCTTGGCTGACACCAAAATGGCCAACTCTAAACGGGAGCTGGATCTCCAGAAAGCTGCCTTCAACCAGGAAGTCAACAGCAAGAAAGCGGAGGCTCAGCTGGCGTACGAGCTACAAGCAGCTAAGGAGCTGCAGAAGATCCGTCTGGAGGAGATTGAGATTGAAGTGGTGCAGAGGAAGAAGCAAATCGTCATCGAGGATAAGGAAATCAATAGGACGGAGAAGGAGCTGATCGCTATAGTCAAGCGGCCCGCCGAGGCCGAGGCGTACAAGATGCTGCAGCTGGCTGAGGGCCAGAAGATAAAGAAGGTGCTGACTGCACAGGCTGAAGCGGAGAAGATCCGGAAGATCGGCGAGGCGGAGGCTAAGTCTATTGAGGCGGTGGGCAAGGCCGAGGCAGAGAAGATGAGGCTGAAGGCCGATGCCTACCAGCAGTATGGAGAGGCTGCCAAGACTGCGCTGGTACTGGAAGCGCTGCCAAAGATTGCTGCAAAGGTGTCTGCTCCTCTGGCCAGGACCAATGAGATTGTGATTCTGAGTGGAGAGGGTAGCCGAGTGACGGGTGAGGTGAACCGTCTGCTGGCTGAATTACCGGTGTCTGTCAACGCTCTCACAGGCGTGGATCTCACAAAGATCCCTCTGCTACAGAAGATGACCAACGCGGAAGCTTGAGACAAATCAGTTCCTGTCCTCGTCGGTACGGTTTATGGGTTTATGCACTCACTAAGAATGCCTTCAGAACACttgaagttatttaaaaaaagtaaaagaaaacaaaactcttaagttaaaaagaaaacaagtggaTTTTTATACCTCTGGTGCCTTAATGTTTTATAGGACCAGAATATTTGCATGTACTGCTGCTCCTCTCCTCCTGTACTGTTcatgtttcagtttttctttggttgtttgtttgtatgtttggtGGATGAGTGAATGGGTGTGTGGGGATTATGATGTGTTTGGGAAACTACTGGCACTACACTACAGTCTGTGTAcaatactttactttatttctgttcttttgcacttttttggattgtgtttgtgttttataagCATGAGAATTTATCCTCATATTGTTGAAGTCATATATATGTTACGATTGATTATGTCTACTGGTATATACATtcatctctttaaaaaaaaaagtgtcagatTGGAATACTGTTTTTAAGGAGGATAAAGGTTGCCAGGAACAATaagtgatttaaaaatgtatctgtAAAGCATCTGTGTGCTCCTCCGAAAAAATCTTCAGGAACTGCGAGACATCTGGTATGTTGCTTTACAAATGATTTCTGAACGCTAAGGCTAAGGGCGTTTTGacaccagcactatttattCGGTTAAATCAGACTCCGGTTGGTTTGTACTCTTGATGTGGTTCATTTCAGCAGGTGTGAAATCGATCAGTAATCGCACTTCTTCTGGAAGTGGTCTCAGTCTGGTACCAATCTCACTTCTTTTTTAGCGAGAATGTGATCCTCTGTTAAGTACACTATTttaatttgagctaaactgctgttcagtTGCAGTTTACCCTGATTTACTACCACAGCTATAAACAAATGCTGCCTCTGCCGCAGCTTCATGTTAAACTGTTTTCACACTGATTGCCTCTGCAGCTGCTTGACTTTGTTTAatatcaactgatccagaccagagaaacagactataggtgtgaaaatgcccttagaGAATCTTTCAGAACCAAGACCTCCAGGGAAAGCCTTGTGGTGCTCTTCACCCTTCGCTTCTGTATGGGTCAGAAGCCTGGACCACATACAGTAGGCACCTAAAAGCACTAGAGGCATATAATCAATGATgcctaaaatatgtaaaatattaagGATTAGCTGGGAGGAGCAATGCACTAATACCAGCGTCTTGGAGGACAGAGATATTTCTATCATCACTGCCACATTTTGCCCAAACCCTACTGGATCACCTTGGATGTTTTACGTCTTCCTAAAGTCCCATAAGTCCTGGAGGCCAAAAGCAGAAACTACAAGGAGaaatttggtgtaaaatgaaTCTGGTGGCAACCCTTTGTCGAATTATCCACCTCTGTTTTTCCCtagcattcccaaatacagcgcttttagctgatgctcccaactaACAGGcctacaatgctagtgataggggcatagcattacccatgcaaagaaatcactgttttcacaccATTAACAAAGTTATCAAAGTAGCACTGACGTCAAGTCACGCTAATTCGAGAGACGAACCCAAACAAAAAGGTAGAATAggttgcaaaataaaataaaattatttctgtGGAAGTGCATGATATTAGCAACCTCTGGAATTCATTCACTTCAAGGTATTGTGTGCATAAACAGTcctttttaataaactgttgTTGCCGTCCATTAATTCCAAATATTAATCCATCCACCACCAATACATTCCCTTTTCCATACTGCAcaggaatataataatatacaagaATCGGTCCAGAACCTGAATCTGATACaaccaacagaaaaaaaaacacaaggacCAAGAAGGAGGACAGTCATACATGCATGACTATAAGACTATAAGAGTTAGATCATATCAttccacatttttattttcctggtaacttttattcATCTATCAATctgacactgttttttttatgagcgTATAACACTACATTCActttattatttcttaaaaCTGTGAGTTAGCTTTACGTTACGTTACGAATGCTACATTTACTACTACACACGTTTGGTGAACGTCTGCTGCCGACGTTGTAAACGAATAGCGCTTACAACTCTCACCATTCTTCAGGAAATATGGAAATTGCCATCAGCATTGAAGGAGCTTTATTAGCGTGTAGCATTTGAGGGCAGTGAATTCTCTGGTGATAGCATTGCCGCCTTACGGGTAATTTCCATCATCCTCTTAGATCAGCCACGTTTACGCTACTTTTATGTGCTGCATGATTGCTTTTGGctagataaacagataaacagacttTTCAAAAACAAGGTCAGATGTCCCTgcatgaaatgtttttttatttattttttctctcataATTTATGCTCATTGATTCATGTCTTAACacttattaatattgtttttacatGAATAGATTTAATTATGTGA

Function

symbol description
flot2 Predicted to enable ionotropic glutamate receptor binding activity and protease binding activity. Involved in several processes, including negative regulation of macromolecule metabolic process; positive regulation of NF-kappaB transcription factor activity; and protein localization to cell periphery. Located in several cellular components, including basolateral plasma membrane; cytoplasmic vesicle; and uropod. Part of flotillin complex. Colocalizes with cortical actin cytoskeleton.

NR:

description
PREDICTED: flotillin-2

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005768 endosome cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K07192 FLOT; flotillin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248649.3 True 3741 mRNA 0.43 11 23564348 23580240

Neighbor

gene id symbol gene type direction distance location
LOC103033181 LOC108411674,LOC108277977 coding upstream 20127 23531850 ~ 23544221 (+)
mrm3 NA coding upstream 142857 23417139 ~ 23421491 (+)
dusp14 dusp14 coding upstream 362331 23191090 ~ 23202017 (+)
tada2a tada2a,LOC107661114,LOC107755391 coding upstream 386789 23158514 ~ 23177559 (+)
traf4 traf4,traf4a,LOC108443497,LOC107758738,LOC107727926 coding upstream 499826 23001851 ~ 23064522 (+)
LOC103033930 wbscr17,LOC108411682,LOC107714690,LOC107582595,LOC107727938 coding downstream 20178 23600418 ~ 23620855 (+)
gdpd1 gdpd1,LOC107672421 coding downstream 279805 23860045 ~ 23875492 (+)
clptm1 clptm1,LOC107715057,LOC107727917 coding downstream 401277 23981517 ~ 23996273 (+)
LOC103021374 LOC103021374,LOC108411837 coding downstream 421890 24002130 ~ 24010615 (+)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding downstream 432405 24012645 ~ 24038337 (+)
G5827 glod4,LOC106612786 non-coding upstream 148761 23410459 ~ 23415587 (+)
G5804 NA non-coding upstream 210194 23352737 ~ 23354154 (+)
G5801 dynll2a,LOC107554284,LOC103397138 non-coding upstream 224574 23335116 ~ 23339774 (+)
G5768 synrg non-coding upstream 316329 23246132 ~ 23248019 (+)
G5762 NA non-coding upstream 348981 23213691 ~ 23215367 (+)
G5845 NA non-coding downstream 2129 23582369 ~ 23637196 (+)
G5858 NA non-coding downstream 166719 23746959 ~ 23773367 (+)
G5861 tyw1,LOC108443711,LOC108278267,LOC107727925,LOC107716137,LOC107659914 non-coding downstream 203854 23784094 ~ 23824071 (+)
LOC103043618 NA non-coding downstream 246970 23827210 ~ 23828483 (+)
G5830 NA non-coding downstream 335831 23916071 ~ 23918384 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 213042 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 407982 23081391 ~ 23156366 (+)
G5646 NA other upstream 599424 22964060 ~ 22964924 (+)
G5620 LOC107694033,LOC107752375,LOC107592755,LOC105030986 other upstream 641267 22902766 ~ 22923081 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other upstream 806135 22708912 ~ 22758213 (+)
G5871 NA other downstream 251996 23832236 ~ 23833830 (+)
LOC103035426 NA other downstream 259753 23839993 ~ 23847367 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other downstream 296759 23876999 ~ 23907474 (+)
LOC103027586 LOC108425877 other downstream 1831954 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 2459916 26040156 ~ 26046246 (+)

Expression


Co-expression Network