LOC103036157 (tyw1,LOC108443711,LOC107727925,LOC108278267,LOC107672403)


Basic Information

Item Value
gene id LOC103036157
gene name tyw1,LOC108443711,LOC107727925,LOC108278267,LOC107672403
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23740632 ~ 23826179 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248655.3
TCCCATAATTCCGCCTTCATCACAAACAACATGGCAGCGTCCTTCAGTGTGTGACTGTCTCTGAGTTTAGCGAGCTGTGTGAGCTTCATACAGCAGTTCACACAGGGTTAACTGTGATGACTGAGTTCTGACAGCCTTTAGTTTTTAATCCGGATACTTTAACAGCGTTGATATTCCCTCCTTCTGCACTTTATCGCCGAAATGTCAGGGTTGGTGGACGGTGCTTGGAGTTACACTGAGGGATGGCTTTGGATGGTGTGGCAGAGCCGGCTGTACGTCTACACTGCTGCAGCTGTTCTGTTGGGACTATGGCTTACAGTAAACATGACCCTGAAAAAGAAAAAGACGGTCCTCACTTCGAGCCCCCCGCTCAGCAAATctgagaaaaagaaggaaaagcttcctgaaaaagagaaagttatCCATGTTGAAGGTGTAAGGATCTTTTATGGGTCACAGACTGGTACTGCGAAGGGCTTTGCCAGAGAGCTTGCAGACGATGCCCGAGCCGCTGGATTCCATTCAGAGGTTTTTGATATGAAAGATTATGATCCAGATGACCGGTTGTCAGATGAGTGCACAAGCAAAATGATTTGTGTGTTTCTCGTGGCCACGTATACTGATGGAAAACCCACAGAGAACGCTGAGTGGTTCTGTAAATGGCTCGAAGAGGCATCCACAGACTTCCGATATGGCAAAACCTACCTGAAAGGAATGAGATACGCAGTCTTTGGGCTTGGGAACTCTGAGTATGTTGGCCATTACAATACGGTGGGTAAAAACGTGGATAAGTGGCTGTGGGCTCTCAGCGCCAGTCGGGTCCTGAGCCGGGGAGAGGGCGACTGCAACGTGGTGAAAAGCCGTAACGGCAGCGTCCAGGCCGACTTCCAGGCCTGGAAGGCAAAGTTCCTGACCCGCCTGCAGGCCCTGGCCAGGGGAGAGAAGAAGGCGTGCAGCGGAAAGTGCAAGAAAAGCTCCTGCAAGAACAAGAAGGAGCACCAGCAGGAAGCTGTGGATGAACACCAAGAAAAGCACAGTTCAGAGGAACTGTTCGAGTCTAGCAGTGATTCAGAGTCTGCTGGCGAGGAGGAGAAGGCTCATGGCTCGGTCATCGACATGGAGGATCTCGGAAACGTCATGAACCACATGAAGAAAGCCAAGAAGCAGAGCGAGGAGGAGTCTCAGAGGGGAAAGCTGTCCAAACTGAATGGAGTGATGAAGACtgagggagaggaggaggcAAGGGAGATGATCACCCCTGCACTGAGAGAAGCACTTACCAAACAAGgatACAAATTAATTGGAAGTCACTCTGGAGTGAAGCTTTGTCGCTGGACCAAGtCAATGCTGAGAGGCAGAGGAGGATGCTATAAGCATACGTTCTATGGGATTGAGTCTCATCGCTGTATGGAGACCACGCCAAGTTTGGCCTGTGCCAACAAGTGTGTTTTCTGCTGGAGACACCACACTAACCCGGTGGGCACCGAGTGGCGCTGGAAGATGGACCCGGCTGAGAAGATCCTACAGGAGGCAGTGGAGAACCACCAGAACATGATCCGTCAGTTCAGAGGTGTGCCGGGTGTACGTCCTGAGCGTTTTGAAGAAGGCCTGACTGTGAAACACTGTGCTCTGTCTCTGGTGGGTGAGCCCATCATGTACCCAGAGATCAACGCCTTCCTGCGCCTCCTCCACCAGCGCCACATCTCCAGTTTCCTGGTTACCAATGCACAGTTTCCTGAGGAGATCAGgagCCTGGTGCCAGTTACCCAGCTGTACGTCAGTGTAGATGCCAGCACTAAAGACAGTCTGAAGAAAATTGACCGTCCGCTCTTTAAAGATTTCTGGCAGAGATTCCTGGACAGTCTGAGGGCCCTCGGTGAGAAGCAGCAGCGCACAGTGTACCGGCTGACCCTGGTGAAGGCTTGGAATGTGGATGAGCTGAAGGCCTATTCTGAACTCATAGCTCTAGGCCAGCCTGACTTCATAGAGGTCAAGGGAGTGACCTACTGTGGAGAAAGCTCCGCCAGCAGTCTGACCATGGCTAACGTGCCCTGGCACGAGGAGGTCATTCACTTTGTGCAGCAGCTGGAAAACCTGCTTCCGGACTACGAGATAGCCTGTGAGCACGAGCACTCCAACTGCCTGCTCCTCGCCCACCACAAGTTTAAGGTGGAAGGCGAGTGGTGGACGTGGATAGACTATGAGCGTTTTCAGGAGCTGATCCAGCGGTACGAGGACAGCGGAGGCGCTGAGACCTTCTCGGCTCTGGACTACGTGGCCAAGACTCCGAGCTGGGCCTTGTTCGGGGGAAGAGAACGAGGCTTCGACCCTTCAGACACACGTTTCCAGAGGAAGAACAAGACCAAAGATATCTCAGGGTGCTGATGGACAGTGTTCTCCTGCAGTTGTACCATCACTTTTTGATGTCTGTATTAGATCTTTTATCTTGGTGTTGAGGACATGTCTCAGATTATTGTGCCTCtaggttttttttcttctccgtGTTCATTTCAAGAGACCAGGTCAGTCTAGATCAGTGTTTCATATAACTTATAAAGCAGCGTACCACCTACGATCAAACCAACACATTTAAGTGTTAACCACCTACTAAAGCTATACTGTGTGGGCCTTACCCACTTTTACCCACCCACAATCTAAAAAGTattgattattgtttattttaaatgcagttttCCTACTgagacaaaatataaaacaacctaaagttattatattttgttcccaattacagtatgtacagtgtgtaaaaaACAGATACTGCTGAAAAACGTAAAACATTTACCACCATAAGGAGCCTGTCAGTGTTTACATTTAGTAACAAATGATCACTTTGACTT
>XM_007248656.3
GTCCCATAATTCCGCCTTCATCACAAACAACATGGCAGCGTCCTTCAGTGTGTGACTGTCTCTGAGTTTAGCGAGCTGTGTGAGCTTCATACAGCAGTTCACACAGGGTTAACTGTGATGACTGAGTTCTGACAGCCTTTAGTTTTTAATCCGGATACTTTAACAGCGTTGATATTCCCTCCTTCTGCACTTTATCGCCGAAATGTCAGGGTTGGTGGACGGTGCTTGGAGTTACACTGAGGGATGGCTTTGGATGGTGTGGCAGAGCCGGCTGTACGTCTACACTGCTGCAGCTGTTCTGTTGGGACTATGGCTTACAGTAAACATGACCCTGAAAAAGAAAAAGACGGTCCTCACTTCGAGCCCCCCGCTCAGCAAATctgagaaaaagaaggaaaagcttcctgaaaaagagaaagttatCCATGTTGAAGGTGTAAGGATCTTTTATGGGTCACAGACTGGTACTGCGAAGGGCTTTGCCAGAGAGCTTGCAGACGATGCCCGAGCCGCTGGATTCCATTCAGAGGTTTTTGATATGAAAGATTATGATCCAGATGACCGGTTGTCAGATGAGTGCACAAGCAAAATGATTTGTGTGTTTCTCGTGGCCACGTATACTGATGGAAAACCCACAGAGAACGCTGAGTGGTTCTGTAAATGGCTCGAAGAGGCATCCACAGACTTCCGATATGGCAAAACCTACCTGAAAGGAATGAGATACGCAGTCTTTGGGCTTGGGAACTCTGAGTATGTTGGCCATTACAATACGGTGGGTAAAAACGTGGATAAGTGGCTGTGGGCTCTCAGCGCCAGTCGGGTCCTGAGCCGGGGAGAGGGCGACTGCAACGTGGTGAAAAGCCGTAACGGCAGCGTCCAGGCCGACTTCCAGGCCTGGAAGGCAAAGTTCCTGACCCGCCTGCAGGCCCTGGCCAGGGGAGAGAAGAAGGCGTGCAGCGGAAAGTGCAAGAAAAGCTCCTGCAAGAACAAGAAGGAGCACCAGCAGGAAGCTGTGGATGAACACCAAGAAAAGCACAGTTCAGAGGAACTGTTCGAGTCTAGCAGTGATTCAGAGTCTGCTGGCGAGGAGGAGAAGGCTCATGGCTCGGTCATCGACATGGAGGATCTCGGAAACGTCATGAACCACATGAAGAAAGCCAAGCAGAGCGAGGAGGAGTCTCAGAGGGGAAAGCTGTCCAAACTGAATGGAGTGATGAAGACtgagggagaggaggaggcAAGGGAGATGATCACCCCTGCACTGAGAGAAGCACTTACCAAACAAGgatACAAATTAATTGGAAGTCACTCTGGAGTGAAGCTTTGTCGCTGGACCAAGtCAATGCTGAGAGGCAGAGGAGGATGCTATAAGCATACGTTCTATGGGATTGAGTCTCATCGCTGTATGGAGACCACGCCAAGTTTGGCCTGTGCCAACAAGTGTGTTTTCTGCTGGAGACACCACACTAACCCGGTGGGCACCGAGTGGCGCTGGAAGATGGACCCGGCTGAGAAGATCCTACAGGAGGCAGTGGAGAACCACCAGAACATGATCCGTCAGTTCAGAGGTGTGCCGGGTGTACGTCCTGAGCGTTTTGAAGAAGGCCTGACTGTGAAACACTGTGCTCTGTCTCTGGTGGGTGAGCCCATCATGTACCCAGAGATCAACGCCTTCCTGCGCCTCCTCCACCAGCGCCACATCTCCAGTTTCCTGGTTACCAATGCACAGTTTCCTGAGGAGATCAGgagCCTGGTGCCAGTTACCCAGCTGTACGTCAGTGTAGATGCCAGCACTAAAGACAGTCTGAAGAAAATTGACCGTCCGCTCTTTAAAGATTTCTGGCAGAGATTCCTGGACAGTCTGAGGGCCCTCGGTGAGAAGCAGCAGCGCACAGTGTACCGGCTGACCCTGGTGAAGGCTTGGAATGTGGATGAGCTGAAGGCCTATTCTGAACTCATAGCTCTAGGCCAGCCTGACTTCATAGAGGTCAAGGGAGTGACCTACTGTGGAGAAAGCTCCGCCAGCAGTCTGACCATGGCTAACGTGCCCTGGCACGAGGAGGTCATTCACTTTGTGCAGCAGCTGGAAAACCTGCTTCCGGACTACGAGATAGCCTGTGAGCACGAGCACTCCAACTGCCTGCTCCTCGCCCACCACAAGTTTAAGGTGGAAGGCGAGTGGTGGACGTGGATAGACTATGAGCGTTTTCAGGAGCTGATCCAGCGGTACGAGGACAGCGGAGGCGCTGAGACCTTCTCGGCTCTGGACTACGTGGCCAAGACTCCGAGCTGGGCCTTGTTCGGGGGAAGAGAACGAGGCTTCGACCCTTCAGACACACGTTTCCAGAGGAAGAACAAGACCAAAGATATCTCAGGGTGCTGATGGACAGTGTTCTCCTGCAGTTGTACCATCACTTTTTGATGTCTGTATTAGATCTTTTATCTTGGTGTTGAGGACATGTCTCAGATTATTGTGCCTCtaggttttttttcttctccgtGTTCATTTCAAGAGACCAGGTCAGTCTAGATCAGTGTTTCATATAACTTATAAAGCAGCGTACCACCTACGATCAAACCAACACATTTAAGTGTTAACCACCTACTAAAGCTATACTGTGTGGGCCTTACCCACTTTTACCCACCCACAATCTAAAAAGTattgattattgtttattttaaatgcagttttCCTACTgagacaaaatataaaacaacctaaagttattatattttgttcccaattacagtatgtacagtgtgtaaaaaACAGATACTGCTGAAAAACGTAAAACATTTACCACCATAAGGAGCCTGTCAGTGTTTACATTTAGTAACAAATGATCACTTTGACTT
>XM_007248657.3
GTCCCATAATTCCGCCTTCATCACAAACAACATGGCAGCGTCCTTCAGTGTGTGACTGTCTCTGAGTTTAGCGAGCTGTGTGAGCTTCATACAGCAGTTCACACAGGGTTAACTGTGATGACTGAGTTCTGACAGCCTTTAGTTTTTAATCCGGATACTTTAACAGCGTTGATATTCCCTCCTTCTGCACTTTATCGCCGAAATGTCAGGGTTGGTGGACGGTGCTTGGAGTTACACTGAGGGATGGCTTTGGATGGTGTGGCAGAGCCGGCTGTACGTCTACACTGCTGCAGCTGTTCTGTTGGGACTATGGCTTACAGTAAACATGACCCTGAAAAAGAAAAAGACGGTCCTCACTTCGAGCCCCCCGCTCAGCAAATctgagaaaaagaaggaaaagcttcctgaaaaagagaaagttatCCATGTTGAAGGTGTAAGGATCTTTTATGGGTCACAGACTGGTACTGCGAAGGGCTTTGCCAGAGAGCTTGCAGACGATGCCCGAGCCGCTGGATTCCATTCAGAGGTTTTTGATATGAAAGATTATGATCCAGATGACCGGTTGTCAGATGAGTGCACAAGCAAAATGATTTGTGTGTTTCTCGTGGCCACGTATACTGATGGAAAACCCACAGAGAACGCTGAGTGGTTCTGTAAATGGCTCGAAGAGGCATCCACAGACTTCCGATATGGCAAAACCTACCTGAAAGGAATGAGATACGCAGTCTTTGGGCTTGGGAACTCTGAGTATGTTGGCCATTACAATACGGTGGGTAAAAACGTGGATAAGTGGCTGTGGGCTCTCAGCGCCAGTCGGGTCCTGAGCCGGGGAGAGGGCGACTGCAACGTGGTGAAAAGCCGTAACGGCAGCGTCCAGGCCGACTTCCAGGCCTGGAAGGCAAAGTTCCTGACCCGCCTGCAGGCCCTGGCCAGGGGAGAGAAGAAGGCGTGCAGCGGAAAGTGCAAGAAAAGCTCCTGCAAGAACAAGAAGGAGCACCAGCAGGAAGCTGTGGATGAACACCAAGAAAAGCACAGTTCAGAGGAACTGTTCGAGTCTAGCAGTGATTCAGAGTCTGCTGGCGAGGAGGAGAAGGCTCATGGCTCGGTCATCGACATGGAGGATCTCGGAAACGTCATGAACCACATGAAGAAAGCCAAGAAGCAGAGCGAGGAGGAGTCTCAGAGGGGAAAGCTGTCCAAACTGAATGGAGTGATGAAGACtgagggagaggaggaggcAAGGGAGATGATCACCCCTGCACTGAGAGAAGCACTTACCAAACAAGgatACAAATTAATTGGAAGTCACTCTGGAGTGAAGCTTTGTCGCTGGACCAAGtCAATGCTGAGAGGCAGAGGAGGATGCTATAAGCATACGTTCTATGGGATTGAGTCTCATCGCTGTATGGAGACCACGCCAAGTTTGGCCTGTGCCAACAAGTGTGTTTTCTGCTGGAGACACCACACTAACCCGGTGGGCACCGAGTGGCGCTGGAAGATGGACCCGGCTGAGAAGATCCTACAGGAGGCAGTGGAGAACCACCAGAACATGATCCGTCAGTTCAGAGGTGTGCCGGGTGTACGTCCTGAGCGTTTTGAAGAAGGCCTGACTGTGAAACACTGTGCTCTGTCTCTGGTGGGTGAGCCCATCATGTACCCAGAGATCAACGCCTTCCTGCGCCTCCTCCACCAGCGCCACATCTCCAGTTTCCTGGTTACCAATGCACAGTTTCCTGAGGAGATCAGgagCCTGGTGCCAGTTACCCAGCTGTACGTCAGTGTAGATGCCAGCACTAAAGACAGTCTGAAGAAAATTGACCGTCCGCTCTTTAAAGATTTCTGGCAGAGATTCCTGGACAGTCTGAGGGCCCTCGGTGAGAAGCAGCGCACAGTGTACCGGCTGACCCTGGTGAAGGCTTGGAATGTGGATGAGCTGAAGGCCTATTCTGAACTCATAGCTCTAGGCCAGCCTGACTTCATAGAGGTCAAGGGAGTGACCTACTGTGGAGAAAGCTCCGCCAGCAGTCTGACCATGGCTAACGTGCCCTGGCACGAGGAGGTCATTCACTTTGTGCAGCAGCTGGAAAACCTGCTTCCGGACTACGAGATAGCCTGTGAGCACGAGCACTCCAACTGCCTGCTCCTCGCCCACCACAAGTTTAAGGTGGAAGGCGAGTGGTGGACGTGGATAGACTATGAGCGTTTTCAGGAGCTGATCCAGCGGTACGAGGACAGCGGAGGCGCTGAGACCTTCTCGGCTCTGGACTACGTGGCCAAGACTCCGAGCTGGGCCTTGTTCGGGGGAAGAGAACGAGGCTTCGACCCTTCAGACACACGTTTCCAGAGGAAGAACAAGACCAAAGATATCTCAGGGTGCTGATGGACAGTGTTCTCCTGCAGTTGTACCATCACTTTTTGATGTCTGTATTAGATCTTTTATCTTGGTGTTGAGGACATGTCTCAGATTATTGTGCCTCtaggttttttttcttctccgtGTTCATTTCAAGAGACCAGGTCAGTCTAGATCAGTGTTTCATATAACTTATAAAGCAGCGTACCACCTACGATCAAACCAACACATTTAAGTGTTAACCACCTACTAAAGCTATACTGTGTGGGCCTTACCCACTTTTACCCACCCACAATCTAAAAAGTattgattattgtttattttaaatgcagttttCCTACTgagacaaaatataaaacaacctaaagttattatattttgttcccaattacagtatgtacagtgtgtaaaaaACAGATACTGCTGAAAAACGTAAAACATTTACCACCATAAGGAGCCTGTCAGTGTTTACATTTAGTAACAAATGATCACTTTGACTT

Function

symbol description
tyw1 Predicted to enable several functions, including 4 iron, 4 sulfur cluster binding activity; FMN binding activity; and tRNA-4-demethylwyosine synthase activity. Predicted to be involved in wybutosine biosynthetic process. Predicted to act upstream of or within tRNA processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including TYW1 (tRNA-yW synthesizing protein 1 homolog).

NR:

description
PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008033 tRNA processing biological_process
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0010181 FMN binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
K15449 TYW1; tRNA wybutosine-synthesizing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248655.3 True 2858 mRNA 0.50 16 23740632 23826178
XM_007248656.3 False 2856 mRNA 0.50 16 23740632 23826179
XM_007248657.3 False 2856 mRNA 0.50 16 23740632 23826179

Neighbor

gene id symbol gene type direction distance location
LOC103034584 caln1,LOC103034584,LOC108443712,LOC107659935,LOC107582596,LOC108277467,LOC107554278,LOC107672359 coding downstream 24986 23635310 ~ 23715646 (-)
txndc17 txndc17,txd17 coding downstream 212374 23524976 ~ 23528258 (-)
nxn nxn,typx coding downstream 217585 23422677 ~ 23523047 (-)
glod4 glod4 coding downstream 325078 23410227 ~ 23415554 (-)
kiaa0100 kiaa0100,LOC107727920 coding downstream 331567 23378071 ~ 23409065 (-)
LOC103035940 NA coding upstream 12962 23839141 ~ 23841427 (-)
LOC103040911 NA coding upstream 234270 24060449 ~ 24063326 (-)
trnag-ucc_7 NA coding upstream 267953 24094132 ~ 24094203 (-)
LOC103041525 NA coding upstream 294506 24120685 ~ 24128197 (-)
rwdd2b rwdd2b coding upstream 394841 24221020 ~ 24223862 (-)
G5949 NA non-coding downstream 69410 23623491 ~ 23671222 (-)
G5948 NA non-coding downstream 156748 23582362 ~ 23583884 (-)
G5947 NA non-coding downstream 158428 23577454 ~ 23582204 (-)
G5723 NA non-coding downstream 742260 22992944 ~ 22998372 (-)
G5705 NA non-coding downstream 743957 22954355 ~ 22996675 (-)
G5970 NA non-coding upstream 15645 23841824 ~ 23875442 (-)
G5975 NA non-coding upstream 61259 23887438 ~ 23888877 (-)
G5977 NA non-coding upstream 68527 23894706 ~ 23895225 (-)
G5987 clptm1,LOC107715057,LOC107659929,LOC107727917 non-coding upstream 155344 23981523 ~ 23995448 (-)
LOC111192645 NA non-coding upstream 171924 23998103 ~ 23998794 (-)
LOC103033507 fam222bb,LOC107661104 other downstream 180132 23548724 ~ 23560500 (-)
srsf1 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234 other downstream 389410 23344496 ~ 23351222 (-)
LOC103028862 dynll2a,LOC107554284,LOC103397138 other downstream 400897 23335066 ~ 23339735 (-)
G5667 c2cd3 other downstream 942342 22796345 ~ 22798290 (-)
G5565 NA other downstream 1112450 22607769 ~ 22628182 (-)
LOC103035104 LOC103035104,LOC108443709,LOC108277991 other upstream 18076 23844255 ~ 23856637 (-)
hip1 hip1,LOC107659933 other upstream 89873 23916052 ~ 23978227 (-)
G6118 NA other upstream 351591 24177770 ~ 24179649 (-)
G6134 farsb,syfb,LOC106581314 other upstream 431305 24257484 ~ 24261652 (-)
G6136 NA other upstream 445104 24271283 ~ 24274431 (-)

Expression


Co-expression Network