LOC103022922 (LOC103022922,LOC108277434)


Basic Information

Item Value
gene id LOC103022922
gene name LOC103022922,LOC108277434
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 8837372 ~ 8839379 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258003.3
TTCAGTATCAGAAGCTGAGGGACAGTAGCTGACATGGCTGGATAGTACTGTGGGTGTGGGGGCTGAATTTAGCGTTCCATGTGATAGCACTCGGGGAAAGAACTACACTTGCAAAGTCTTCAGCTAAAGGATTATCACTTCAGGTCTCTGGAAAAGCTGGAAAATGCAGACCGTCAAGTGTGTGGTGGTTGGGGATGGAGCCGTGGGAAAGACCTGTCTTCTTATCTCCTTCACCACCAACGCCTTCCCCAAGGAGTACATCCCAACTGTGTTCGACAACTACAGTTCACAGATCACAGTGGATTCCACACCTACCAGTCTTAATCTGTGGGACACAGCGGGACAGGAGGCCTACGACCGATTGCGTACCATATCCTACCCCCAGACCAACGTCTTCATCATATGTTTCTCCGTCTCTAACCCAACCTCTTTTGAGAACATCAAGCTTAAGTGGTATCCTGAGATATCAAAACACTGCTCCAATGTACCCTTTCTACTGGTGGGCACAAAAATGGACGAGCGAGACAACCCAGAAgttttaaagaaactaaaggAGCAAAAGTTGGCTCCTATCACCAAACACCAGGGGGAGACCCTTGCCCGAGAAATCAAAGCCATCAAATACCTCGAATGCTCGGCTCTAAAGCAAGTTGGAGTGAGGGAGGTTTTCGAGGAGGCTGTCCGTGCCTTTCTGAACCCAAAGCCTGTGCCTTCTAAAAGATTCTGTTTGCTGTTGTAAAGAAATGGATTTTGTTGACTTGTCTATGCTTTGTCCATGAATGTAAACCGCTTCATACTTTTCTAGTCGCTAGGGATGCAGGGAAATGGGAATTTTAAGCCAATATTTACATCCAATTTTATAACTTCAAACATGTACTACTAATAATGCTCTTGCTGATTCATGAATAtttttgaaatgtaaaaatgtgagcTAATCCTTCCAGGATCAGcattatatagaaatataacattaatttATATAACCCTATGGTGGAATAGTGGCCTGTCCAAGGGTATTCCTGATCTGTGCAAGCACAATAAACAGAACCACTcaaaacaaaaatca

Function

NR:

description
rho-related GTP-binding protein RhoG-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258003.3 True 1066 mRNA 0.44 2 8837372 8839379

Neighbor

gene id symbol gene type direction distance location
LOC111194918 NA coding upstream 11012 8822490 ~ 8826360 (+)
LOC103023232 NA coding upstream 20685 8807167 ~ 8816687 (+)
LOC103027547 NA coding upstream 24152 8811248 ~ 8813220 (+)
LOC111192950 LOC108432968 coding upstream 139790 8676662 ~ 8697582 (+)
LOC103026472 LOC108432989,LOC108277724 coding upstream 1057512 7317013 ~ 7779860 (+)
LOC103022607 chrna10a,LOC108432977,LOC107570043,LOC446029,LOC106567906 coding downstream 7461 8846840 ~ 8854201 (+)
LOC111192952 NA coding downstream 100260 8939639 ~ 8940410 (+)
LOC103038411 NA coding downstream 315010 9154389 ~ 9156240 (+)
LOC103045140 wscd1,LOC108432998,LOC107756514,LOC107682602,LOC107666180 coding downstream 568720 9408099 ~ 9463585 (+)
LOC103038783 LOC108432999,LOC108278263,LOC106613073,LOC107589733,LOC107714181,LOC106581277,LOC105901427,LOC107666202 coding downstream 733141 9572520 ~ 9600832 (+)
G2362 stim1,LOC108277929,LOC108432992,LOC101465674,LOC100691215,LOC102214188 non-coding upstream 50362 8743016 ~ 8787010 (+)
G2328 NA non-coding upstream 206525 8629797 ~ 8630847 (+)
G2326 NA non-coding upstream 209461 8627648 ~ 8627911 (+)
G2174 NA non-coding upstream 957846 7877733 ~ 7879526 (+)
G2125 NA non-coding upstream 1091460 7708197 ~ 7745912 (+)
G2393 NA non-coding downstream 17974 8857353 ~ 8862747 (+)
G2400 nos2,LOC108432969 non-coding downstream 36473 8875852 ~ 8882592 (+)
G2443 NA non-coding downstream 334957 9174336 ~ 9174756 (+)
G2453 NA non-coding downstream 476305 9315684 ~ 9316134 (+)
LOC111195023 NA non-coding downstream 546889 9386268 ~ 9394588 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 102420 8732723 ~ 8734952 (+)
G2304 NA other upstream 276894 8560066 ~ 8560478 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 2282922 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 2422578 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 3134189 5681026 ~ 5703183 (+)
lyrm9 lyrm9,LOC102789908 other downstream 105082 8944461 ~ 8957392 (+)
G2509 NA other downstream 792486 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 794714 9634093 ~ 9743491 (+)
LOC103029949 slc46a1 other downstream 2419067 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 2448752 11288131 ~ 11288846 (+)

Expression


Co-expression Network