LOC103023232


Basic Information

Item Value
gene id LOC103023232
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 8807167 ~ 8816687 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258004.2
ttaaggtcagtccATCTGAAAAATTTTATGAacttttaaagacaaaaagTTACCTCTTATGCACAGGATAAggtcatcagagttaccagccttaacAAGGtgagagcacctaaatgcttcacagagtattttggattGTTTAACTCTTTTAGATTTAGTACATGATTCTGTACAtgtccttcatagtctgaatgatatcagtaatcagtattcattTAATGGAATTCAGGACACTTGTGGGTGACACCACCATGAAGCCTCATTAGACTGTCCCGTGTGTCCCATTCAGCTGCCTATATAGGAAACAGATCCTAACCTAAGGGACTGAGGCTGTCATGGCTGGATAGTACTGTCGGTGTGGAGGCTGTTTCATGTGAGAGCACTCGGAGAAACAATTTCCAAAGCTACAGGATAATCTCTCTGGGTCTTAAACAAGCTGCTGAATGGAAACCATCAAATGTGTGCTGGTTGGAGATAAAGCTTCAGAAAAGACCTGTCTTCTAATCACCTTCACCACCAATGCCTTCCCCAAGGAGTACATCCCAAATGTGTTTGACAACTACATCTCAACTGTCATGGTAGATTCCAGACCCTTCACCCTTAAGCTGTGGGACACAGCGGGTCAGGAGGACTTTGACCGACTCCGTCCCTTATCCTACCCACAGACTAATGTCTTTATTATATGTTTCTCCATCTCTGACCCAACCTCTTATGATAATGTCAAGCTTAAGTGGTATCCTGAGGTTTCACATCACTGCCCTAACGTACCCTTCCTGCTGGTGGGCACAAAAATGGAAGAGCGAGAAGATCCAACAGTTTTAGAAGAACTAAAAGAGCAGAAATTGACTCCTATCACCAAGCAGCAGGGGGAGACCCTTGCTCAAGAAATTGGAGccataaaatattttgaatGCTCGGCTCTACAGCAAGTCGGAGTCAGGGAGGTATTTGTGGAGGCGGTTCGTGCCTTCCTGATGGCAAACGCAAATCCTGTCCCTCCTAAACAATGCTGTATGCTGTTATAAGAAAATGTGATTAGTTGACATCTCCATGCATTTGTCCACACATGCATTCTTTCATAATATCTTGGGGTGTGATGCAATGCTATGGAAAATATCGGCGAATGGTTACTGTTTCTATAtctatatagatattttattgtaaatatttacTGATACTAATAcaggtaattaattaattaattaattaatatgtataatatgtagAAATATAGTATTTAAAACTGAAACATAGCATTTTGAACTGGAAAAACATCATTATTTAGTTATCAACTAAATTCTTATAAACTTGTCCAACATCACAACAACAGCTTCAAGTAAAATTGTTATTAATTGTTATATTCAtcttataaaaaaagttttaaaggaGGAAGCAAGGGCAGTAACAGCAGATCCACAACAAAAATAAGAGGGCTAGGCAAGAGAGAAAACTAGGAACAGAAATAGGTCAGTAACAAGAGGTCAAGAGAGCAAGGAATTGCACTGTAACAGAGCTAGGTAAACTAGGTAATACTCGGCAGGGAACACAGGGAACAGAGAACTATTTATAGGGGTACACACAGGCGACAGCAATTAGCAGTCAGTAGGTAGGCAAGCCAAACTTTGCAAAGTCACATGATCAGCCGAGTCATTGTAGTGCATTGACAGGGAAAGCTGGGAAATAGAATTTTTAGGGGAAACTTTGTGACGAACAGGCAGACGGATAGAGTCaggattttttcttttattaaaattcaCATGCCTCCACTGCCCTCTGCTGTTGAGGTGattacagtgttacagtagGACTGGGTCCAGCACAGTTAACACATGGGTGTTTAGTCTTACCCACAAACGGCTGGTGttgctgcaggttttcattctaTTCCCAGCCATCACTAGAATACTCTGAAAAGACTGAAGATAAAGTCTGACACTCTCTCATATCTAAAGACAGTTTCTTAATACTCTGCAAAACTGAGAATCTTACAGGGTCTCTAGTTATGGCTGCATATTGCAAAGTTTAAGATTTATACAGAAAGTATTGATCTTACATAAATATGTGTATAGGGGTACCCTGGAAATATCCAAAACCAGTTTAGGTACTGGCAATTGCATTACCTGGAATTTGTTTTACAAATAGTCTGcataaaaatgatatttttctgTACATTTACTGATGAATACTGTCTAGAAACAGAACACCACATGGGTTGGAAATAGATCCAGATCTAATTGGAGCTAGAAGCCTATTTAGGAAcctgtacatacagtacaggtttggaaacacattaaattctgtgttttttctttatttca

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258004.2 True 2318 mRNA 0.39 3 8807167 8816687

Neighbor

gene id symbol gene type direction distance location
LOC111192950 LOC108432968 coding upstream 109585 8676662 ~ 8697582 (+)
LOC103026472 LOC108432989,LOC108277724 coding upstream 1027307 7317013 ~ 7779860 (+)
LOC111192949 NA coding upstream 1533860 7270865 ~ 7273307 (+)
LOC103038844 NA coding upstream 1604601 7189480 ~ 7202566 (+)
LOC103039155 NA coding upstream 1618594 7181782 ~ 7188573 (+)
LOC111194918 NA coding downstream 5803 8822490 ~ 8826360 (+)
LOC103022922 LOC103022922,LOC108277434 coding downstream 20685 8837372 ~ 8839379 (+)
LOC103022607 chrna10a,LOC108432977,LOC107570043,LOC446029,LOC106567906 coding downstream 30153 8846840 ~ 8854201 (+)
LOC111192952 NA coding downstream 122952 8939639 ~ 8940410 (+)
LOC103038411 NA coding downstream 337702 9154389 ~ 9156240 (+)
G2362 stim1,LOC108277929,LOC108432992,LOC101465674,LOC100691215,LOC102214188 non-coding upstream 20157 8743016 ~ 8787010 (+)
G2328 NA non-coding upstream 176320 8629797 ~ 8630847 (+)
G2326 NA non-coding upstream 179256 8627648 ~ 8627911 (+)
G2174 NA non-coding upstream 927641 7877733 ~ 7879526 (+)
G2125 NA non-coding upstream 1061255 7708197 ~ 7745912 (+)
G2393 NA non-coding downstream 40666 8857353 ~ 8862747 (+)
G2400 nos2,LOC108432969 non-coding downstream 59165 8875852 ~ 8882592 (+)
G2443 NA non-coding downstream 357649 9174336 ~ 9174756 (+)
G2453 NA non-coding downstream 498997 9315684 ~ 9316134 (+)
LOC111195023 NA non-coding downstream 569581 9386268 ~ 9394588 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 72215 8732723 ~ 8734952 (+)
G2304 NA other upstream 246689 8560066 ~ 8560478 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 2252717 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 2392373 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 3103984 5681026 ~ 5703183 (+)
lyrm9 lyrm9,LOC102789908 other downstream 127774 8944461 ~ 8957392 (+)
G2509 NA other downstream 815178 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 817406 9634093 ~ 9743491 (+)
LOC103029949 slc46a1 other downstream 2441759 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 2471444 11288131 ~ 11288846 (+)

Expression


Co-expression Network