LOC103043284 (tspan13)


Basic Information

Item Value
gene id LOC103043284
gene name tspan13
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13715172 ~ 13721065 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260878.2
ATCTCATACACGACTTGGACAGATCAGACCCCAGGGCTGTTGTTCCTGCTGTGTTTCTGCAGTGCTGGAGCTTATAGGAGGCAGTTTAAGGAACTGAGCAGGATcctgagaggaggaggaggactggCAGCTTCTCCAGTGTTTACTCTTCATTCAGCGGCAGGAGTCTGAGAAAGGAGCAGCGAACATGGCCTGTGGAGGATTCTTCTGCTCCAAAAATGCCCTCTGTGCGCTTAATATTCTCTATATGCTGGTGAGTCTGCTCATGATTGCTGTGGCAGCCTGGGGTAAGTGGCTTGGACTGGTCTCCAGTTTCCAGGTGTTGGGCGCTGTCATTGGAGTGGGTTTCTTTCTGTTCATTGTGGCCGTTGTGGGTCTGTGTGGAGCTCTGAAGCAACATCAAGTCCTCCTGTTCTTTTACATGCTCATCCTGTTCATGGTGTTTATTGTGCAGTTCTCAGTGTCATGTGCATGCCTGGCCATCAACAAGGAGCAGCAGAATCAGCTACTGGAGCTGGGATGGAACAGGTCTGAGTCCATGCAGAAGGACATAGAAAGGTCACTGAACTGCTGTGACTTCTACCAAGTCAACTACAATGAAACCTGTGAGGCTGACTGCTTCAGAAACCAACAGTGTTCAGCATGTGCAGTGATAATTCAGAGATATGCTGATGATGCACTGCACTTTGTAGGAGGAATGAGCTTGTTCTTCAGTTTCACTGAGATTCTGGGCGTGTGGCTAACGTACAGATACAGGAATCAAAAGGCACCTCGGATACATTCCGGCCCGTACAACTAGTTAGAAGGAAACTTTCCACTGAAATTCTTATAGTCATATGATGTACAGCCTTTAACAATGACTGTTTTGAAAGTCTGAAGTGTACAGTTTGATACCCTGGCacaaatccttttttttctcaagcTGACATAATAATTTAATAGCTGTTTTTTGCATGTCAtctcagaaaagaaaaaaaaaactttcaatagaagtcattGAAAAATGATTTGTTCCATTGGTCCATTCCTTATGACATCAAATTGTCATGagatcaaaataaatatatttgtaagctGCTTTTTACAAATGATGAAAAGTTTGAAATCTAGTAATAAGACAAAAGATCCAACAACACACaaagataaaaacattaaactcaCAGTGAGGAAGCCCAAATTTAGTGCCCAAGTTGCATGGGCAACTTCCTAGAGCTAGAGGGAGACAACATGGGAGGGGACCATCCTCCCGTGGTCAATTATTACTTATAAATTATTGGTAAAAAGCCCCTGTACCATCACATACGACAGTTGTTACATTCATGTATCTACTGATACAATCAAAATAGTGAtggtataataataaatgcaatgATAAGggtcagtaataataataatatcaacaGTAATAACGTGGTGGTGCTGAATATGGGGGTTTAGgagttttaaatgtaattcccagcatgctctgtgGCTGCCCTTTTTCCTTGATGTTTCTTTTCTGGGGGGTTCTACTGTATGTGGTttcttgttttgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagttaatgtgtttgtttagtTGTTTAATTGTGGTGTTTACTCACCTCCTGGTGTTAGTGTGAAGGGTGGACAAAGTCTCTACCGGTAGGCCGCCATTTGAAATTTGAGAGAAACACAGCTAATAGGCagttatttctgtctctcttcttcCTGTTTAAATAAAGTTGCTAAATCAAACTGACATATCCTTGTTACTCCAATTGTAGGCAATGTGAAGAATTATTACCAGATTCGCATTATGTCggaaagtaaaaacaaatatggCAAAA

Function

symbol description
tspan13 Predicted to enable calcium channel regulator activity. Predicted to act upstream of or within regulation of calcium ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: tetraspanin-13

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17356 TSPAN13_31; tetraspanin-13/31

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260878.2 True 1852 mRNA 0.42 6 13715172 13721065

Neighbor

gene id symbol gene type direction distance location
scarf1 NA coding upstream 10750 13692166 ~ 13704422 (+)
LOC103044209 rilp coding upstream 23281 13678669 ~ 13691891 (+)
prpf8 prpf8,LOC107685080 coding upstream 36821 13663446 ~ 13678351 (+)
npas1 npas1 coding upstream 259699 13383977 ~ 13455473 (+)
arhgap35 arhgap35,LOC107670284,LOC107726507,LOC107699836,LOC107574404 coding upstream 384875 13186121 ~ 13330297 (+)
LOC103039353 LOC108440382 coding downstream 450999 14172064 ~ 14213314 (+)
ankrd13b ankrd13b coding downstream 562556 14283621 ~ 14327119 (+)
LOC103041611 gipr,LOC107714193,LOC107548593,LOC107756746,LOC107685094,LOC106580753 coding downstream 950447 14671512 ~ 14705719 (+)
clip3 clip3,LOC107714192,LOC107685098,LOC107548591,LOC107669746 coding downstream 1010042 14731107 ~ 14753636 (+)
LOC103042749 NA coding downstream 1045749 14766814 ~ 14802961 (+)
G3397 NA non-coding upstream 131964 13581276 ~ 13583208 (+)
G3390 NA non-coding upstream 162757 13544450 ~ 13552415 (+)
G3388 pitpna,pitpnaa,LOC107743636,LOC107669737 non-coding upstream 173963 13527207 ~ 13541209 (+)
LOC111188402 NA non-coding upstream 222195 13467673 ~ 13492977 (+)
G3431 LOC108427003,LOC107582235,LOC107730853 non-coding downstream 26420 13747485 ~ 13750325 (+)
G3501 NA non-coding downstream 406297 14127362 ~ 14128856 (+)
G3502 NA non-coding downstream 409372 14130437 ~ 14131676 (+)
G3507 NA non-coding downstream 420155 14141220 ~ 14142903 (+)
G3509 NA non-coding downstream 423136 14144201 ~ 14144691 (+)
G3313 sept5b,LOC108425237 other upstream 730903 12982625 ~ 12984269 (+)
G3096 NA other upstream 1787922 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 2290721 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 2426326 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 2435995 11258446 ~ 11279177 (+)
LOC103035587 NA other downstream 496742 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 723493 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 1119228 14840293 ~ 14845626 (+)
G3736 NA other downstream 1240108 14961173 ~ 14963583 (+)
G3790 NA other downstream 1317490 15038555 ~ 15038914 (+)

Expression


Co-expression Network