scarf1


Basic Information

Item Value
gene id scarf1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13692166 ~ 13704422 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260879.3
CTGGCTTTCTTCAGGGCCGCAGCAGACGTacagagagtgaggaagaggagcagTGGGCCATTGCTGGCTACAGCCCACAGGACTGACCATTATCCTGGTCCTGGACTGGGTCCGGAGCTCAGGGACTTTGTGGTCTGGTTCTTCCAGAGAGAATAGAGGCATGGAGCAGCTGGGGAGGGTCCTGACCTGCCTGGGACTGCTCCTCCTCTGCTCTCTGGCCTCCGCTCAAAAGCTCTCGCCCACAGGGAAGAATGTCTGCCTCAGCCCCAGGGACTCTTCTCTTGTGTGTTGTTCTGGATGGGCCCAGCAGGGTGAAGAGTGCACTATACCACTCTGTGAGGGTGAGAGATCCTGCACACAGGACGAGGTGTGTTCATTTCCAGGAGTATGCAGATGCAAACCTGGCTTCTTTGGGTTCCAGTGTAAGACTCCCTGTCCACCGGAGTTCTGGGGCTCTGACTGTCGCGAGCTCTGTCTGTGCCACCCTCACGGACACTGTGATGCTGCTACGGGCAAGTGCACCTGCCTACCCACCCGCTGGGGCAACCTGTGCCAGAACAATTGTAAATGCAGTCGCCACGGGCGCTGTGATCCAGTATATGGAAACTGTACCTGTGAAGAGGGCTGGTGGACGTCCACCTGCAGTAAGGCCTGCCAGTGCCACCAGGGCACATCCACCTGCGACCAGACCACGGGGCGCTGCCTCTGTAAAGTAGGCTACTATGGGCTAAAGTGCAGTCTACCCTGCAACTGCTACCTCTCGCCCTGCCTGCAGCAATCAGGGGACTGCCAGTGTGTGAAGGGCAGGTGGGGAAGGAACTGTGACCGCCGCTGCATCTGTGACCTCAGCCACGGAGACTGTGAACAGTACTCAGGAGAGTGTCAGTGTGAGGCAGGCTACAAGCGGCCCTTTTGTCGCGAGACCTGCAGTGCAGGCTTCTATGGGAGAGGCTGTACAGAGAGCTGTGGAAAATGTGAGGGTGGTAAACCATGTTCGAAGCTGGATGGCGCTTGTGATGGCTGCGCCCCAGGATGGAACGGCACACTCTGCGACCAGCCCTGCCCTCCGGGATACTATGGCAAGCTCTGCCAGAATGTGTGCCCTCGCTGCAGGAGGGGAGAGCCATGCCACATCGAAACAGGAGAGTGCTCACACTGTGACCCAGGCTGGACTGGACCAAGGTGTAGCCAGCCATGCCCTGAGGGTACCTTTGGGGACAGTTGTCGCTTCCTCTGCAGTCCCTGCTATCACGGCCGCTGTGACCACGTGACAGGAAATTGTGTCTGCCACTCTGGCTTTCAGGGTGTGAGGTGCAACAGTTCTTGTCCTGATCGCCTGTATGGAATAAACTGTTCCTTGGCTTGTGATTGTGGAGATGATGTGTGCCATCCTGCAACCGGTGCCTGTCCATACAGCAGTCGTGCAGCACTTCTCACAGGGCTTCTGATTCCGCTGCTGCTTATTATCCTCGCTTTACTGttctgttgttgctgttgtggAAGTCCAGCTGATGGAAAGCACAGGGTGGCAGTAGGGGATGGGAGCACGACCGGCCGCATGAAGCATCATGTCTACACAGTGCTAGCTAACATGAGCGCAGCCATGCCGTGCCTCACCTTCTGGTCCTCTGGGCTGCCCAGGGTTACAGTGTCTCATCATGATCCGGAGCTCACCTTTAACCACAGCTTTATTGAGCCTCCTTCCTCTGGCTGGGTCACTGACTCCTTTGAGACTGATGAGGATGGAGAGGCACTGTACTGTCTCCCACCCAGAGAAGACATCCCAGCTGTGGCTGGAGGTGAGTTCCAGGAGCTGAGCTCGAAGTGCAACGTCTTTCCTGACCCGTCTGTGTTCAGCACTGAGGACATGTCTCTGGCGTTTGGCATTCCCCGCACCTCCAGCATTGCCAAGTCCAAGCGGCCTTCCGTCTCCTTCGCTGAGGGCACCAAGTTCAGCCCTAAGGAGCGGCGAGGCTCAGGCCAGGAGCTGCCTGCTAATGCACGGAAGCCTAAATCCCCCTGGGGAGTGCTGATGCTCTCTGCGCTGCAGGGGGGAAACCAAGGGCAGGTGGAAGGAGAGAAGGAAGAGGGCACAGATGAGGGTAATGCATCTACAGAGGACCAAGAGTCTGGTTTACCACCTGAGGCTTCGGAAACAGAGCCAGCCTTAAGGACTCATCTGACTGTTCCGGGCAGCAGACGGCGCACCCTCTCCAACACCAAGAAACACCTCCAGCCACAGGCCTCCTCTGATGGCCAGGAGGCAGATAAAGAGGCAGATAAAGTGACCACTGTCTACATGACTGTAGGCAAGGCTGCTCATGTTGTAAAGTCAGAGAGCAGTTCTGAAGGGCCAGTGCAGGCCATGCTACGCAGACTAGGTAGTCTCCAAAGACAACGTGAGGAAGCAAACCGGCCTAAAGGTAAAAACCCAGCCGTGACAAAACCCCCTCGCAGGAAACTAGGGGCACGGGCCAGTGTTTGGGAGCAGGCTGCCGGGGGAAGCACATCTGAGGTGGTCATGAAAAAGCCCAGTCGCAAGAAACGCAACTCAGCGGGGGAAACAGAAACCCCACGTGAGAACAGCGCCACCAAGAGGCCCCTGTCCTCCAGTCTcatgagtgttcctgaaagccccTTGCGAGAGTCACGGGTGAGCACGGACCCAAGTGCAACTTCTGAACAAGACACACAGTTAGATGCAGGTTATGAGACAGTGGCTCCATCTGAAGAGGCCTCCACTCAATCAGAGGTCATTATTAATGAGACTCTGGCAGTGCAGGAGGACGGACCCAATTACgagaatgtgtatatatatcctTCTTGAGGGAGGTTAGATTCTTTACCATCACTGAAAATTAATGgagttttaacttttaaaaacgtCAGTAATCTGGCTCCCTTCAGGTTTATTGAACATTTATTGAACTGTGAATAGTAATTTAACTACAATTTAAGTAGTAAAGCAAAGGATTACTGATCAACTAAGTTTCTATTTGATGTTCAAGTTAAGTTTAAGTAACTTCACATTTTAAGAGAGACAGTTTATTCGTTTTTTAGGTtagaatactgttttttttacattgattaaaCTACatcttcatcattttttttatagcaaaTACACAATTATCCACCTAATTATGATGTAAAACAATTTTCCCAAAGTTTCCCAATACCAGGTGTACCTCCCAGTTTATCTACTCATgaaattttaagaatttttatCAATGGGTTGTTgaaatttgtttacaaatacattttccttttttctgtgtactttaaatgtctttttaaatccTCATACTTTAAACTGGAATATTCATTAGTTGTCATTCCAGTTGCTGGTGCTAATGCTTTTTTAGGAAATAATGAGAATACCAAAGAAGAATATGGCATAAGAAAAGACATGCCATAACACGTGTAAATAGGTCACATAAGGTAGATTATTAATTGtctttttaaactaatttaaaggaccattaaggattataaAATGCCTGTAGAAACTCATAatatgatcaggatgtatccacagatattaaggaaacattaTGAATTTAAGCTCTGGCAGCTCTCGAcagtaaaaagttttttttctatttgaacCATGCTGTATGTCACGGAACCTGTATGGGATGTTATTGATCAAAGACAAACATGCTGTATAAAATCATACGTCTGTTGCTTGAAaagtaaaatgttctttttttattttaaagcatacaTGTGGGTGGTCCTATACAAAAAATGTgtagtttaaagtgttttttagagGGTAGAGTTCCAGAACATATTTACAGGATCTAACCAGTATAGATTTTAGAGAGACCTTTACCCTATACCTGTGAACTGACCTGCCTGCACCCATTACATGTAGGTCATCTATGAACAAAAGTACGAACAGACATGTTCTGACAAAAAAAGTTGGAAATGTATGGGATTTTCTTATACCATAAGTCTGGTccatatttagcatttttatttttgaactgGAGTTGGAAGATCATTACACAGTTGCTCAATATGtctggatcattgtcctgctgcagaacccaagtacgcctgagcttaaggtcacaaactgatggccggacattcttcttcaggattttctggtagagagcagaattcatggttccatcaattacagcaagttgttcaggtcctaaagcagcaaagcagcctcagaccatcacactaccaccataTGTTTGACTTTCAGTATGATTTATGCCAAATGTAAcgagacacacaccttccaaaaaggtCCACTTTTTCTTTAGCAGAACTATAGAAGAAATCTATAATTGGACACCAATTATTTGGGATAGGTCAACAATtgtaaatttatttttctgtgtaaacATCCCTTTTAAGTTTGAATATAGACATTAATTGGTGa

Function

NR:

description
PREDICTED: scavenger receptor class F member 1-like

GO: NA

KEGG:

id description
K24318 SCARF1; scavenger receptor class F member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260879.3 True 4405 mRNA 0.48 11 13692166 13704422

Neighbor

gene id symbol gene type direction distance location
LOC103044209 rilp coding upstream 275 13678669 ~ 13691891 (+)
prpf8 prpf8,LOC107685080 coding upstream 13815 13663446 ~ 13678351 (+)
npas1 npas1 coding upstream 236693 13383977 ~ 13455473 (+)
arhgap35 arhgap35,LOC107670284,LOC107726507,LOC107699836,LOC107574404 coding upstream 361869 13186121 ~ 13330297 (+)
LOC103022831 rab4b,LOC103022831,LOC108426982,LOC107567272,LOC107592649,LOC103378089,LOC107699834,LOC100706225 coding upstream 541982 13124782 ~ 13150184 (+)
LOC103043284 tspan13 coding downstream 10750 13715172 ~ 13721065 (+)
LOC103039353 LOC108440382 coding downstream 467642 14172064 ~ 14213314 (+)
ankrd13b ankrd13b coding downstream 579199 14283621 ~ 14327119 (+)
LOC103041611 gipr,LOC107714193,LOC107548593,LOC107756746,LOC107685094,LOC106580753 coding downstream 967090 14671512 ~ 14705719 (+)
clip3 clip3,LOC107714192,LOC107685098,LOC107548591,LOC107669746 coding downstream 1026685 14731107 ~ 14753636 (+)
G3397 NA non-coding upstream 108958 13581276 ~ 13583208 (+)
G3390 NA non-coding upstream 139751 13544450 ~ 13552415 (+)
G3388 pitpna,pitpnaa,LOC107743636,LOC107669737 non-coding upstream 150957 13527207 ~ 13541209 (+)
LOC111188402 NA non-coding upstream 199189 13467673 ~ 13492977 (+)
G3431 LOC108427003,LOC107582235,LOC107730853 non-coding downstream 43063 13747485 ~ 13750325 (+)
G3501 NA non-coding downstream 422940 14127362 ~ 14128856 (+)
G3502 NA non-coding downstream 426015 14130437 ~ 14131676 (+)
G3507 NA non-coding downstream 436798 14141220 ~ 14142903 (+)
G3509 NA non-coding downstream 439779 14144201 ~ 14144691 (+)
G3313 sept5b,LOC108425237 other upstream 707897 12982625 ~ 12984269 (+)
G3096 NA other upstream 1764916 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 2267715 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 2403320 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 2412989 11258446 ~ 11279177 (+)
LOC103035587 NA other downstream 513385 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 740136 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 1135871 14840293 ~ 14845626 (+)
G3736 NA other downstream 1256751 14961173 ~ 14963583 (+)
G3790 NA other downstream 1334133 15038555 ~ 15038914 (+)

Expression


Co-expression Network