LOC103044209 (rilp)


Basic Information

Item Value
gene id LOC103044209
gene name rilp
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13678669 ~ 13691891 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260881.3
GGGGGAAAACATACTGGGCATTTTTCTGCTCTGCCAACCAAGGTTTCGCTATGCTGTGTAGAATTGGAGCATTATGGGAGCAACAGAGCACGTAATAGTCGTAGGGATCATATTACAACACAACGCGTATATGTTTTAGGCTCGTGTCGGAGCTTGTAGAGAGTACAAAAGAAAACAACCTCCTTACCAGAATACAGAAGCCTCGCTCTCTAGTGTTTAGAGTAAATGAAGGCTCGTTGAAGTGAAGTGAAACCTAAGAACAGAAAGTAACTCGTGGACATGGCAGGCTGACTCTTCTGGTTTACTGGCTGCATTGAGGCTCGtgtagtatttttatttctggCTCTGCCATGGATACAGTGGAGGAACCCCAAGCCGTGAAGAGGATTAATGAGTGTTTTGAGAGGACGTTTTCAGCTCTGACCGTGGACGACGTGTACGAAATCGCTAAACTCGTCGGCTCAGAGGTGGAGAAGCTCATTGACCACTATGGAAAGGCCAGTGTGGAGGGACTGGTTCCGAAAATCGTGAAAGTTCTGGAGCTGTTGGAGAGCTTCGCCGCCAGGAATCAGACACTGAGGTGTAAAGAAGAGGAGTTGCTGAAGGCTTTCGAGACTTTACAggtacagcagcagaagaaacGGACTGCGAGGGAAAGTGAAGAAAGCAATAATAACGCAGACTTAAAGCAGGACTGGCAGCAGAAGGAGCAGAAATGGAGGCTGAAGGTAGAGGAGCTTCAGGCTCAGGTGTTGCAGCTCCAGGAGGACAACCAGGAGCTACTGGGCTCACTCTCAAAAGAAGATCGTACACAGCGTCAGGAGAGAGAGGTGATGCTCAAACTGAAAGAAGTTGTGGATAAACAGCGTGATGAACTGAGAGCAAAAGTGCAAGAGACATCCAGTATGTCTAAAGAGGTGGAAGCGCTTCAGGAGCAGCTGGACCGCTTTATGAAGATGAATGGAGAGCTGAGGCATAAGCAGAGCATGATGCAAGCTCAGCTCAAGAGCTCTGTGGAGAGGAGAGCAGACATGGAGGCTGACCTctgtgagaaacagaaagaaatagaACGACTCACCACACAGCTGGAGAAAGCCAGCACGCACATCGCTGCCAGCACGAACAATCCAACCATTGACCTCACAAATAAGATGATCATTGACCTGAACGACCCGAATCGACCCTGTTTCACCAAGCAGGAGGTGCGGGATATGCTGTTTGAGAGGAATGAGCTGAAGGCCAATCTTTTCTTGGTTCAAGAGGAGCTTGCCTACTATCAGAGGGAGATCCTGAATGATGAGAGATGTCCAGGCTTCTTGCTGGAGGCAGTACGCTCTGCTATAAGGAAGCAAAGAACCGTCATTAAAGCCAAAATGCTGGGCATTCGAGAGGACGAATGCAGCAGTGATGAAGAAAAGGGACCTTTATTTGAGAGGAGAGCAAACGAGGACGTTGAAACAGACTGCACTGACAGCAAACCTGCAGAATCACGCATCCGAAACCTCTTCGGCTTCCTGACCCGCTCGGGCAGTGGCAGGAGCCCCGGCCATCAGACGTCCAGTTCCACGTGGGAGATCATCAACCCAGACGAAGAGGAGCCTGAGCTGGAGACGTAATCCAGAGACCCACCCTGAGAGCTATATACAATCATATATACACCCTGCCTGAGAACTTGAACACTGCACGATGGTGTACAGCTTGGATGCTGTATGCTCTGCACACCATTTAGAGTTTGATGTACAGATATTGAAGGGAACAGAGACACTAGATGACATTTATATTGATATACCatctgaaaacattttaattagttCACAGTATCAACAGAAAGCACTAGAAAAGTAATGAGAgcaattattttatgtaaaaagaaaTCTATATTGGGAACCGATACCAAATctctatattgttttatatgaaaagaggaaattgttattttttgtagagagtgtattttaatatgaattttaacCAAAGATGCCAGTATGTATTAAAACACAATTAAGCCAAACCAGTACCTTTTTCTGCCACTAGGGGCCATTAGAACGTTTTGTAATTCATTTTAAGTACATTCTTAGGATTCATTCTTAGGATTTCTTTCTCCTGAAATGGAGTTGGGTTTTGTTCAGCGTATCTTTATGTGagattatatttaaattgttttttgtttttaagatttTGAAACAGTTCTTCatgtattataaaaatatataataactttTAATCCTTTATATATGGGCATAACATACCAGTTGTGTTGTCTGTAAACCAGCCTTTAGGACACTAGCTGTTCCTTTAAATGCAGTAGAGTTTGGTTTGTCCAAACATTATATATGAATTGTATGGTAAATAGCAATAATGTACCTCAGTGTTTTGTCCCAGAATCCTGAATGACATGCAGTCaactgtagaaaacatggacaCTGTGGCACCATTCCATTCTGTTCTgaagaaattaagtaaaaagtGTCCATCCTGCTGTCAAATTTGCAACTAGAGTCTGTGTAAAAGAAACCAGGTAGGCAGAGCTAGGCTCACCCACTTATTTGATAGACCCAACCTATTCTTCCTGCATTGAGCTTATAGCACAGTCTAAAGGAGCAGAAGCAATGCAGACTTTTCCTCTTTATTTCCAGtttgtttaaccttttttttgtcCTGATCAGAAAAAAATTTGTGTGATTAGACaagaacaaatattaatgacaatattacaCAGCTACTCAAAGTAGTCAAGACATGATCATTACTTTATTACAACTtattttacttactttattACAATATATGGATATGGCCTCAGCCATTTTTCCTGACCATAATTTTGTGTTGTATGTACTTAACAAAGGGATTGCATTAATGTGAATGAGCAGTTTTGGGAattatttaaaactgtgatttttttttttgtttattattaatttttcattattattttttattccaccATTCTCATATTCTTATCTCTTAGTCAGAAAATGCATACAGTAATGAAGAAAAATGTGCTGCAGATGtatttgttcatttaattttgttttaatttaattttgtcttTCAGCTAAAGCAGTCAGCCACTTAATTCCTAAGTGTAACCCTGCCTTCTTACGATATAGTCTGAATaacgttaaaaaaaatgatttaatgcgCCAATAGTAGCACAGAGAATATACTGCAACCTGCCAGCAGATGAGCAAATGTTCTTTGGTCTTCtgtccatgttttctacagtcactgACCTAAACATTGTGAGAAACTTGTTTGGGTTTTGTTGAAAAGCCAAAGATTTCTTAGAAGCATTCTAAGTATTCTAATAATTAATGAGTTTATCtggaaatgtttataatatgacctcagtgtttgtgtgtatagcATGGGTTGTGCTGCTGTCCCTTTGTGTCTTTCTGTTTGTCTTTAGGTGTTCACACAGAGGAAGCCTCTGTTTCCTTTAGGGGAAACCAGAGATCATGTGAGCGCTTCCAGACTTGAGTGGACTGGTGGCCTGAAATGAAGACACTTTGGGGAATCTGGGCATCTCTGTCATGCCCACAGTATTTGTCAGTGGTGTTCCAATTTACTTTTGTATGAATACATCTACAGGCCTTTGACttccaaataaaacaatcaagCATCAGTGA
>XM_007260882.3
GGAAAACATACTGGGCATTTTTCTGCTCTGCCAACCAAGGTTTCGCTATGCTGTGTAGAATTGGAGCATTATGGGAGCAACAGAGCACGTAATAGTCGTAGGGATCATATTACAACACAACGCGTATATGTTTTAGGCTCGTGTCGGAGCTTGTAGAGAGTACAAAAGAAAACAACCTCCTTACCAGAATACAGAAGCCTCGCTCTCTAGTGTTTAGAGTAAATGAAGGCTCGTTGAAGTGAAGTGAAACCTAAGAACAGAAAGTAACTCGTGGACATGGCAGGCTGACTCTTCTGGTTTACTGGCTGCATTGAGGCTCGtgtagtatttttatttctggCTCTGCCATGGATACAGTGGAGGAACCCCAAGCCGTGAAGAGGATTAATGAGTGTTTTGAGAGGACGTTTTCAGCTCTGACCGTGGACGACGTGTACGAAATCGCTAAACTCGTCGGCTCAGAGGTGGAGAAGCTCATTGACCACTATGGAAAGGCCAGTGTGGAGGGACTGGTTCCGAAAATCGTGAAAGTTCTGGAGCTGTTGGAGAGCTTCGCCGCCAGGAATCAGACACTGAGGTGTAAAGAAGAGGAGTTGCTGAAGGCTTTCGAGACTTTACAggtacagcagcagaagaaacGGACTGCGAGGGAAAGTGAAGAAAGCAATAATAACGCAGACTTAAAGGACTGGCAGCAGAAGGAGCAGAAATGGAGGCTGAAGGTAGAGGAGCTTCAGGCTCAGGTGTTGCAGCTCCAGGAGGACAACCAGGAGCTACTGGGCTCACTCTCAAAAGAAGATCGTACACAGCGTCAGGAGAGAGAGGTGATGCTCAAACTGAAAGAAGTTGTGGATAAACAGCGTGATGAACTGAGAGCAAAAGTGCAAGAGACATCCAGTATGTCTAAAGAGGTGGAAGCGCTTCAGGAGCAGCTGGACCGCTTTATGAAGATGAATGGAGAGCTGAGGCATAAGCAGAGCATGATGCAAGCTCAGCTCAAGAGCTCTGTGGAGAGGAGAGCAGACATGGAGGCTGACCTctgtgagaaacagaaagaaatagaACGACTCACCACACAGCTGGAGAAAGCCAGCACGCACATCGCTGCCAGCACGAACAATCCAACCATTGACCTCACAAATAAGATGATCATTGACCTGAACGACCCGAATCGACCCTGTTTCACCAAGCAGGAGGTGCGGGATATGCTGTTTGAGAGGAATGAGCTGAAGGCCAATCTTTTCTTGGTTCAAGAGGAGCTTGCCTACTATCAGAGGGAGATCCTGAATGATGAGAGATGTCCAGGCTTCTTGCTGGAGGCAGTACGCTCTGCTATAAGGAAGCAAAGAACCGTCATTAAAGCCAAAATGCTGGGCATTCGAGAGGACGAATGCAGCAGTGATGAAGAAAAGGGACCTTTATTTGAGAGGAGAGCAAACGAGGACGTTGAAACAGACTGCACTGACAGCAAACCTGCAGAATCACGCATCCGAAACCTCTTCGGCTTCCTGACCCGCTCGGGCAGTGGCAGGAGCCCCGGCCATCAGACGTCCAGTTCCACGTGGGAGATCATCAACCCAGACGAAGAGGAGCCTGAGCTGGAGACGTAATCCAGAGACCCACCCTGAGAGCTATATACAATCATATATACACCCTGCCTGAGAACTTGAACACTGCACGATGGTGTACAGCTTGGATGCTGTATGCTCTGCACACCATTTAGAGTTTGATGTACAGATATTGAAGGGAACAGAGACACTAGATGACATTTATATTGATATACCatctgaaaacattttaattagttCACAGTATCAACAGAAAGCACTAGAAAAGTAATGAGAgcaattattttatgtaaaaagaaaTCTATATTGGGAACCGATACCAAATctctatattgttttatatgaaaagaggaaattgttattttttgtagagagtgtattttaatatgaattttaacCAAAGATGCCAGTATGTATTAAAACACAATTAAGCCAAACCAGTACCTTTTTCTGCCACTAGGGGCCATTAGAACGTTTTGTAATTCATTTTAAGTACATTCTTAGGATTCATTCTTAGGATTTCTTTCTCCTGAAATGGAGTTGGGTTTTGTTCAGCGTATCTTTATGTGagattatatttaaattgttttttgtttttaagatttTGAAACAGTTCTTCatgtattataaaaatatataataactttTAATCCTTTATATATGGGCATAACATACCAGTTGTGTTGTCTGTAAACCAGCCTTTAGGACACTAGCTGTTCCTTTAAATGCAGTAGAGTTTGGTTTGTCCAAACATTATATATGAATTGTATGGTAAATAGCAATAATGTACCTCAGTGTTTTGTCCCAGAATCCTGAATGACATGCAGTCaactgtagaaaacatggacaCTGTGGCACCATTCCATTCTGTTCTgaagaaattaagtaaaaagtGTCCATCCTGCTGTCAAATTTGCAACTAGAGTCTGTGTAAAAGAAACCAGGTAGGCAGAGCTAGGCTCACCCACTTATTTGATAGACCCAACCTATTCTTCCTGCATTGAGCTTATAGCACAGTCTAAAGGAGCAGAAGCAATGCAGACTTTTCCTCTTTATTTCCAGtttgtttaaccttttttttgtcCTGATCAGAAAAAAATTTGTGTGATTAGACaagaacaaatattaatgacaatattacaCAGCTACTCAAAGTAGTCAAGACATGATCATTACTTTATTACAACTtattttacttactttattACAATATATGGATATGGCCTCAGCCATTTTTCCTGACCATAATTTTGTGTTGTATGTACTTAACAAAGGGATTGCATTAATGTGAATGAGCAGTTTTGGGAattatttaaaactgtgatttttttttttgtttattattaatttttcattattattttttattccaccATTCTCATATTCTTATCTCTTAGTCAGAAAATGCATACAGTAATGAAGAAAAATGTGCTGCAGATGtatttgttcatttaattttgttttaatttaattttgtcttTCAGCTAAAGCAGTCAGCCACTTAATTCCTAAGTGTAACCCTGCCTTCTTACGATATAGTCTGAATaacgttaaaaaaaatgatttaatgcgCCAATAGTAGCACAGAGAATATACTGCAACCTGCCAGCAGATGAGCAAATGTTCTTTGGTCTTCtgtccatgttttctacagtcactgACCTAAACATTGTGAGAAACTTGTTTGGGTTTTGTTGAAAAGCCAAAGATTTCTTAGAAGCATTCTAAGTATTCTAATAATTAATGAGTTTATCtggaaatgtttataatatgacctcagtgtttgtgtgtatagcATGGGTTGTGCTGCTGTCCCTTTGTGTCTTTCTGTTTGTCTTTAGGTGTTCACACAGAGGAAGCCTCTGTTTCCTTTAGGGGAAACCAGAGATCATGTGAGCGCTTCCAGACTTGAGTGGACTGGTGGCCTGAAATGAAGACACTTTGGGGAATCTGGGCATCTCTGTCATGCCCACAGTATTTGTCAGTGGTGTTCCAATTTACTTTTGTATGAATACATCTACAGGCCTTTGACttccaaataaaacaatcaagCATCAGTGA

Function

symbol description
rilp Predicted to enable protein dimerization activity. Predicted to be involved in cilium assembly. Predicted to act upstream of or within protein transport. Predicted to be active in ciliary basal body and cytoplasm. Orthologous to human RILP (Rab interacting lysosomal protein).

NR:

description
PREDICTED: rab-interacting lysosomal protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260881.3 True 3635 mRNA 0.41 8 13678669 13691891
XM_007260882.3 False 3629 mRNA 0.41 8 13678672 13691891

Neighbor

gene id symbol gene type direction distance location
prpf8 prpf8,LOC107685080 coding upstream 318 13663446 ~ 13678351 (+)
npas1 npas1 coding upstream 223196 13383977 ~ 13455473 (+)
arhgap35 arhgap35,LOC107670284,LOC107726507,LOC107699836,LOC107574404 coding upstream 348372 13186121 ~ 13330297 (+)
LOC103022831 rab4b,LOC103022831,LOC108426982,LOC107567272,LOC107592649,LOC103378089,LOC107699834,LOC100706225 coding upstream 528485 13124782 ~ 13150184 (+)
LOC103023447 LOC108426981,LOC108278228,LOC107380297,LOC103474627,LOC102221837,LOC107746191 coding upstream 636058 13034480 ~ 13042611 (+)
scarf1 NA coding downstream 275 13692166 ~ 13704422 (+)
LOC103043284 tspan13 coding downstream 23281 13715172 ~ 13721065 (+)
LOC103039353 LOC108440382 coding downstream 480173 14172064 ~ 14213314 (+)
ankrd13b ankrd13b coding downstream 591730 14283621 ~ 14327119 (+)
LOC103041611 gipr,LOC107714193,LOC107548593,LOC107756746,LOC107685094,LOC106580753 coding downstream 979621 14671512 ~ 14705719 (+)
G3397 NA non-coding upstream 95461 13581276 ~ 13583208 (+)
G3390 NA non-coding upstream 126254 13544450 ~ 13552415 (+)
G3388 pitpna,pitpnaa,LOC107743636,LOC107669737 non-coding upstream 137460 13527207 ~ 13541209 (+)
LOC111188402 NA non-coding upstream 185692 13467673 ~ 13492977 (+)
G3431 LOC108427003,LOC107582235,LOC107730853 non-coding downstream 55594 13747485 ~ 13750325 (+)
G3501 NA non-coding downstream 435471 14127362 ~ 14128856 (+)
G3502 NA non-coding downstream 438546 14130437 ~ 14131676 (+)
G3507 NA non-coding downstream 449329 14141220 ~ 14142903 (+)
G3509 NA non-coding downstream 452310 14144201 ~ 14144691 (+)
G3313 sept5b,LOC108425237 other upstream 694400 12982625 ~ 12984269 (+)
G3096 NA other upstream 1751419 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 2254218 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 2389823 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 2399492 11258446 ~ 11279177 (+)
LOC103035587 NA other downstream 525916 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 752667 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 1148402 14840293 ~ 14845626 (+)
G3736 NA other downstream 1269282 14961173 ~ 14963583 (+)
G3790 NA other downstream 1346664 15038555 ~ 15038914 (+)

Expression


Co-expression Network