prpf8 (prpf8,LOC107685080)


Basic Information

Item Value
gene id prpf8
gene name prpf8,LOC107685080
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13663446 ~ 13678351 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260888.3
CGCACTTCGCGGTGGTGAATTGTGTGTTGTTACGCACAACGTGTGGAATCGTTTCTCGGAGCGCCATTCTGCAGGAAACTCCGGAGAAACTCTGGGTTTAAACACATAGACGCTGCCATGGCAGCTACATTCCCCTACAGAGGTGTCCCTGGTGTTCCTCCTCCTGCCCCGGTGCCAGACTACATGTCTGAGGAGAAGCTTCAAGAAAAAGCCCGGAAATGGCAGCAGCTGCAGGCAAAACGCTACTCGGAGAAGAGGAAATTTGGTTTTGTCGATGCTCAGAAAGAGGACATGCCACCAGAGCATGTGCGGAAAATCATTCGGGACCATGGAGATATGACCAACAGGAAATTTCGTCACGACAAACGAGTCTATCTTGGGGCTCTGAAGTACATGCCTCATGCAGTACTGAAACTGCTGGAGAATATGCCCATGCCCTGGGAGCAGATCAGAGATGTGCCAGTGCTGTACCACATCACAGGAGCCATTTCCTTTGTAAATGAAATTCCTTGGGTCATTGAACCAGTTTACATTGCACAATGGGGTACCATGTGGATCATGATGCGTCGtgagaaaagagacagaaggCACTTCAAGCGTATGCGCTTTCCTCCCTTTGATGATGAGGAGCCCCCACTGGACTATGCTGATAACATTCTGGATGTGGAGCCCCTGGAAGCCATTCAGATGGAAATggaccctgaggaagattgCTCAGTTGTAGAATGGTTTTACGAACACCAGCCACTGAAGGATGCTACCAAATATGTCAATGGGACGACATACAGACGTTGGCAGTTCACCTTGCCAATGATGTCCACTCTTTATCGGTTAGCCAACCAGCTGCTAACTGATTTAGTGGATAGGAACTACTTCTATTTGTTTGACCTGAAGGCCTTCTTCACTTCAAAGGCCTTAAACATGGCCATTCCTGGAGGGCCCAAATTTGAACCCCTGGTCAGAGACATCAATCTACAGGATGAAGACTGGAATGAGTTTAACGACATCAACAAGATCATCATCAGACAGCCGATTAGAACAGAGTACAAGATTGCTTTCCCATACTTGTACAATAATCTTCCACATCACGTCCATCTCACTTGGTACCACACTCCTAATGTGGTGTTCATCAAGACAGAGGATCCTGATTTGCCTGCTTTCTACTTTGATCCTCTCATCAATCCCATCTCTCACAGACATTCTGTAAAAAGCCAAGAGCCACTGCCAGACGATGACGAGGAATTTGAGCTTCCTGAGTATGTGGAGCCTTTCCTCAAAGAGACGCCTCTTTATACTGACAACACAGCCAATGGGATTGCCCTTCTCTGGGCCCCACGTCCGTTCAACCTGCGCTCCGGAAGGTCCAGGCGTGCCATCGATGTTCCCCTGATCAAGAATTGgTACAGGGAACACTGCCCTGCTGGACAGCCTGTGAAAGTACGTGTGTCCTACCAGAAGCTCCTGAAGTACTATGTTCTCAATGCGCTGAAACACAGACCACCTAAAGCGCAGAAGAAGAGATACCTTTTCCGATCCTTCAAGGCCACAAAATTCTTCCAGTCCACAAAGCTAGACTGGGTGGAGGTGGGCCTGCAGGTTTGCCGACAAGGTTACAACATGCTGAAcctgctgattcacagaaagAACCTCAACTACTTGCACTTGGACTACAATTTCAACTTGAAGCCTGTCAAAACCCTCACCACAAAAgagcGTAAAAAGTCCCGATTCGGGAATGCGTTCCACTTGTGCCGTGAGGTTCTCCGTCTGAGCAAGTTGGTAGTGGACAGTCATGTACAGTACAGACTGGGAAATGTTGATGCATTCCAGTTGGCAGATGGGCTGCAGTACATCTTTGCCCATGTGGGTCAGCTGACTGGCATGTACCGTTACAAGTACAAGTTGATGAGGCAGATCAGGATGTGCAAAGACTTGAAGCATCTCATCTACTACCGCTTCAATACAggtCCAGTTGGGAAGGGTCCAGGTTGTGGTTTCTGGGCTCCAGGATGGAGAGTTTGGCTCTTCTTTATGAGAGGCATTACTCCTCTTCTGGAGAGATGGCTTGGCAACCTGCTGGCCAGGCAGTTCGAAGGTCGTCATTCCAAGGGAGTTGCAAAAACTGTCACCAAGCAGCGTGTGGAGTCTCACTTTGATCTTGAGCTGAGAGCTGCTGTGATGCATGACATCCTGGACATGATGCCTGAAGGCATCAAACAGAACAAGGCAAGGACCATCCTGCAGCACCTCAGTGAGTCCTGGAGATGCTGGAAGGCTAACATTCCTTGGAAGGTCCCAGGACTTCCAACCCCCATCGAGAACATGATCTTGCGCTATGTGAAGGCCAAAGCTGATTGGTGGACCAACACAGCCCATTACAACAGAGAGCGAATTAGGAGAGGTGCTACTGTGGACAAGACTGTCTGCAAGAAAAACCTTGGCCGCCTCACACGTCTGTACCTGAAGGCTGAGCAGGAGAGGCAGCACAACTACTTGAAGGATGGTCCATACATCACTGCAGAAGAGGCGGTGGCCATCTACACCACTACTGTCCATTGGCTGGAGAGTCGGCGCTTCTCTCCAATTCCATTCCCTCCTCTCTCCTACAAACACGACACCAAGCTTCTCATCCTGGCTCTGGAGAGGCTCAAAGAAGCCTACAGTGTGAAGTCAAGGTTGAATCAGTCTCAGCGTGAGGAGTTGGGTCTGATCGAGCAGGCGTATGACAACCCTCACGAGGCTCTGTCCAGGATCAAGCGTCACCTCCTCACCCAGAGAGCTTTCAAAGAGGTGGGCATTGAGTTCATGGACCTTTATAGCCACTTGGTACCGGTGTATGATGTGGAGCCCCTGGAGAAGATCACTGATGCATACCTGGATCAGTACTTGTGGTACGAGGCTGACAAGCGCAGGCTTTTCCCACCGTGGATCAAACCAGCCGACACAGAGCCACCTCCACTTTTGGTATACAAATGGTGCCAAGGAATCAACAATCTGCAGGATGTGTGGGAAACAACCGAGGGAGAATGCAACGTCATGCTGGAGTCACGCTATGAGAAAATGTATGAAAAGATCGACTTGACGCTGCTCAACAGGCTGCTGCGTCTCATTGTTGACCACAACATTGCTGATTATATGACTGCCAAGAACAACGTTGTCATCAACTACAAGgacatgAACCACACCAACTCGTACGGCATCATTCGTGGCCTGCAGTTTGCTTCCTTCATTGTCCAGTACTATGGGCTTGTGATGGACCTTCTTGTTCTGGGTCTTCATCGGGCCAGTGAAATGGCAGGACCTCCCCAGATGCCCAATGACTTCCTCAGCTTTCAGGACAGTGCTACAGAGGGTGCACATCCTATTCGCCTTTACTGCAGATACATCGATCGCATCCACATGTTCTTCAGgTTTTCTGCTGATGAGGCCAGAGATCTGATTCAGCGGTACCTAACTGAACACCCAGACCCCAACAATGAAAACATTGTGGGCTACAACAATAAGAAATGCTGGCCTAGAGATGCCAGGATGAGGTTGATGAAGCATGATGTTAACCTGGGTCGCGCTGTGTTCTGGGACATTAAGAATCGCCTTCCTCGCTCTGTGACCAcggtgcagtgggagaacagctTTGTCTCAGTCTACAGTAAAGACAATCCCAACCTGCTCTTTAACATGTGTGGCTTTGAGTGTCGTATCCTGCCAAAGTGCCGCACCAGTTATGAGGAGTTCACCCACAAAGATGGTGTGTGGAACCTGCAGAATGAGGTGACCAAGGAAAGGACAGCTCAGTGCTTCCTGCGAGTGGATGATGAATCTATGCAGAGGTTTCACAACCGAGTGCGACAGATTCTCATGGCTTCTGGATCTACCACTTTCACCAAGATCGTGAACAAATGGAACACAGCTTTGATTGGTCTGATGACCTACTTCCGTGAGGCTGTGGTCAACACTCAGGAGTTGCTGGACCTTCTAGTGAAGTGCGAGAATAAGATCCAGACCCGTATTAAGATCGGTCTGAACTCTAAAATGCCTAGCCGTTTCCCTCCTGTGGTCTTCTACACCCCCAAGGAGCTGGGTGGACTGGGCATGTTGTCCATGGGCCATGTGCTCATCCCACAGTCTGACCTGAGgtgGTCCAAACAAACGGATGTAGGAATCACTCATTTCCGCTCTGGTATGAGTCACGAAGAGGATCAGCTGATTCCCAATCTCTATCGCTACATTCAGCCTTGGGAGAGTGAGTTCATTGACTCTCAGAGAGTCTGGGCTGAATATGCCCTGAAGAGACAGGAGGCCATTGCCCAGAACAGGCGCTTGACTCTTGAGGATTTGGAGGATTCATGGGACAGAGGTATTCCTCGTATCAACACCCTCTTCCAAAAGGACAGGCACACACTGGCCTATGACAAGGGCTGGAGAGTCAGAACAGATTTCAAACAGTACCAGGTGCTGAAGCAAAACCCATTCTGGTGGACACATCAGAGGCACGACGGGAAACTGTGGAATCTGAACAATTACCGCACAGATATGATCCAGGCTTTGGGAGGAGTGGAGGGAATTTTGGAGCACACCCTCTTCAAGGGCACATACTTTCCAACATGGGAAGGTCTCTTCTGGGAAAAGGCCAGTGGCTTTGAGGAGTCCATGAAATGGAAGAAACTGACCAACGCTCAGAGATCTGGTCTGAACCAGATCCCCAATCGACGATTCACTCTGTGGTGGTCTCCCACTATCAACAGAGCTAATGTCTATGTGGGCTTCCAGGTGCAGTTGGATCTCACTGGAATCTTCATGCATGGCAAAATTCCAACACTCAAGATCTCCTTGATTCAGATCTTCAGGGCTCACTTGTGGCAAAAGATTCATGAGAGCATTGTCATGGATCTTtgtcagGTGTTTGACCAAGAGTTGGATGCTCTGGAGATTGAGACTGTCCAGAAGGAAACCATCCATCCCAGGAAGTCGTACAAAATGAACTCCTCCTGTGCAGACATTCTGCTGTTTGCCTCCTACAAGTGGAATGTCTCCCGACCATCACTGCTTGCTGACTCAAAGGATGTGATGGACAGTACCACCACTCAGAAGTACTGGATTGACATTCAGCTCAGATGGGGAGATTATGACTCCCATGACATTGAAAGATATGCTAGAGCCAAGTTCCTGGACTACACCACAGATAACATGAGTATCTACCCATCGCCCACTGGTGTGCTGATTGCCATTGATTTGGCCTACAATCTGCACAGTGCCTATGGAAACTGGTTCCCTGGCAGCAAGCCTCTGATCCAACAGGCCATGGCTAAGATCATGAAGGCCAATCCTGCCCTTTATGTGCTAAGGGAGCGCATCCGCAAGGGTCTGCAGCTTTACTCCTCAGAGCCCACTGAGCCCTACCTGTCCTCCCAGAATTATGGAGAGCTCTTCTCTAACCAGATCATCTGGTTTGTGGATGACACTAATGTGTACCGTGTCACCATCCACAAGACCTTTGAGGGCAACTTGACAACGAAACCAATCAATGGAGCCATTTTCATCTTCAATCCAAGAACTGGACAGCTCTTCCTGAAGATCATTCACACTTCTGTGTGGGCTGGACAGAAGCGTCTGGGACAGCTGGCCAAGTGGAAGACTGCTGAGGAAGTTGCTGCTCTTATTCGATCACTGCCTGTTGAAGAGCAGCCCAAGCAGATCATTGTCACCAGAAAGGGCATGTTGGATCCTCTTGAGGTGCACTTGTTGGATTTCCCTAACATTGTGATCAAGGGATCCGAGCTACAGCTGCCCTTCCAGGCCTGTCTGAAGGTGGAGAAGTTTGGAGACCTTATTCTGAAGGCCACTGAGCCTCAGATGGTTCTGTTCAATCTGTATGATGACTGGCTCAAGACGATCTCGTCTTACACAGCTTTCTCACGTCTGATCTTGATCCTGAGAGCTCTGCATGTGAACAATGACCGTGCAAAGGTGATCCTGAAGCCAGACAAAACCACCATCACCGAGCCACACCATATCTGGCCCACTTTAACTGACGAGGAGTGGATCAAGGTGGAGGTGCAGCTCAAAGATCTCATTCTGGCTGACTATGGCAAGAAGAACAACGTGAACGTGGCTTCTTTGACGCAGTCTGAGATCAGGGACATCATCCTGGGTATGGAGATTTCAGCTCCTTCCCAGCAGAGACAGCAGATTGCTGAGATAGAGAAGCAGACCAAAGAGCAGTCTCAGTTAACAGCCACCCAGACCCGCACCGTGAACAAGCACGGTGATGAGATCATCACTTCCACTACCAGCAATTACGAGACACAAACATTTTCCTCCAAGACTGAATGGAGGGTCAGGGCCATCTCTGCAGCCAACTTGCACTTGCGAACCAATCACATCTACGTGTCTTCAGATGACATTAAGGAAACTGGATACACTTACATTCTGCCCAAGAATGTGCTGAAGAAGTTCATCTGCATCTCCGACTTGCGTGCTCAAaTTGCAGGCTATCTGTATGGCACTAGTCCTCCAGATAATCCCCAAGTGAAGGAGATTCGCTGCATTGTGATGGTGCCTCAGTGGGGAACACACCAGACTGTTCATCTGCCCAATCAGCTGCCACAGCATGAATATCTAAAGgaaATGGAGCCACTTGGCTGGATCCACACCCAGCCCAATGAATCTCCTCAGCTTTCTCCTCAGGATGTGACCACACATGCCAAGGTCATGGCAGACAACCCATCCTGGGATGGGGAGAAAACCATCATTATTACCTGCAGtTTCACCCCAGGATCCTGTACCCTTACTGCTTATAAACTGACTCCTAGTGGATATGAATGGGGCAGGCAGAACACAGACAAGGGCAACAACCCTAAGGGTTACCTGCCATCCCATTACGAGAGGGTGCAGATGCTGCTGTCTGATCGCTTCCTTGGTTTCTTCATGGTACCTGGGCAAGTGTCCTGGAACTACAACTTCATGGGTGTCCGTCATGACCCCAACATGAAGTACGACCTGCAGCTGTCCAACCCTAAAGAGTTCTATCATGAGGTTCACAGGCCCTCTCACTTCCTCAACTTTGCCTCTCTGCAAGAGGGTGAAATCTACAACGCCGACCGTGAGGATATGTATGCTTAGCACCCTGGACTGCTACTGTTGATATTCAACAAGCACCTAAGAGGCTTAAGCTGGCAAAGCCACTGTGCTGTGTGTCCTTTTCGAGACTTTTAAATACCATGGAGCTAACAGTCATGTCAGCTTGGAACCACCTGttttgttttgggttttttaaGACTGAGCTAAGATTGTGGAATTTTGCTTTACCTTTAAAGTCTTTTGTCATGATAATGTGTGCTAATGTGCTAATGCACATTCTTGAAATCCTGTATTTTTGTCACTGTAGTTACGAGTTAACTATGTGAAAGTTCTTAAATCAATCAATGCTCTTGTCCGAACATGAACATGGAAATGCaaaattcttttcttttttttttttataagtcaGTTGTAATATGCCTGTACCCAGTAGCTGTGTTGTGCTTCTTTTTTATGTACATGGTCATTTGGGgcaaaataataaagaacaacACTTTATTGTA

Function

symbol description
prpf8 Predicted to enable pre-mRNA intronic binding activity and snRNA binding activity. Acts upstream of or within spliceosomal tri-snRNP complex assembly. Predicted to be located in nucleus. Predicted to be part of U5 snRNP and catalytic step 2 spliceosome. Is expressed in brain. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 13. Orthologous to human PRPF8 (pre-mRNA processing factor 8).

NR:

description
pre-mRNA-processing-splicing factor 8

GO:

id name namespace
GO:0000244 spliceosomal tri-snRNP complex assembly biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0017070 U6 snRNA binding molecular_function
GO:0030623 U5 snRNA binding molecular_function

KEGG:

id description
K12856 PRPF8, PRP8; pre-mRNA-processing factor 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260888.3 True 7580 mRNA 0.49 43 13663446 13678351

Neighbor

gene id symbol gene type direction distance location
npas1 npas1 coding upstream 207973 13383977 ~ 13455473 (+)
arhgap35 arhgap35,LOC107670284,LOC107726507,LOC107699836,LOC107574404 coding upstream 333149 13186121 ~ 13330297 (+)
LOC103022831 rab4b,LOC103022831,LOC108426982,LOC107567272,LOC107592649,LOC103378089,LOC107699834,LOC100706225 coding upstream 513262 13124782 ~ 13150184 (+)
LOC103023447 LOC108426981,LOC108278228,LOC107380297,LOC103474627,LOC102221837,LOC107746191 coding upstream 620835 13034480 ~ 13042611 (+)
LOC103023132 LOC108426979,LOC108278227,LOC107567275 coding upstream 634641 13003537 ~ 13028805 (+)
LOC103044209 rilp coding downstream 318 13678669 ~ 13691891 (+)
scarf1 NA coding downstream 13815 13692166 ~ 13704422 (+)
LOC103043284 tspan13 coding downstream 36821 13715172 ~ 13721065 (+)
LOC103039353 LOC108440382 coding downstream 493713 14172064 ~ 14213314 (+)
ankrd13b ankrd13b coding downstream 605270 14283621 ~ 14327119 (+)
G3397 NA non-coding upstream 80238 13581276 ~ 13583208 (+)
G3390 NA non-coding upstream 111031 13544450 ~ 13552415 (+)
G3388 pitpna,pitpnaa,LOC107743636,LOC107669737 non-coding upstream 122237 13527207 ~ 13541209 (+)
LOC111188402 NA non-coding upstream 170469 13467673 ~ 13492977 (+)
G3381 NA non-coding upstream 177533 13482049 ~ 13485913 (+)
G3431 LOC108427003,LOC107582235,LOC107730853 non-coding downstream 69134 13747485 ~ 13750325 (+)
G3501 NA non-coding downstream 449011 14127362 ~ 14128856 (+)
G3502 NA non-coding downstream 452086 14130437 ~ 14131676 (+)
G3507 NA non-coding downstream 462869 14141220 ~ 14142903 (+)
G3509 NA non-coding downstream 465850 14144201 ~ 14144691 (+)
G3313 sept5b,LOC108425237 other upstream 679177 12982625 ~ 12984269 (+)
G3096 NA other upstream 1736196 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 2238995 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 2374600 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 2384269 11258446 ~ 11279177 (+)
LOC103035587 NA other downstream 539456 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 766207 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 1161942 14840293 ~ 14845626 (+)
G3736 NA other downstream 1282822 14961173 ~ 14963583 (+)
G3790 NA other downstream 1360204 15038555 ~ 15038914 (+)

Expression


Co-expression Network