LOC103023132 (LOC108426979,LOC108278227,LOC107567275)


Basic Information

Item Value
gene id LOC103023132
gene name LOC108426979,LOC108278227,LOC107567275
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 13003537 ~ 13028805 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260901.3
agagagagagagaggaggggagggGTGTCCAGACTGGACGGACTGGACAGGCCCAGCAGTGCCTTGATGGAGCATGGGTCAGGTTATAGGATTCTCTCATTGCAaggagTTTGGCTCTGTGTCCTCAACACCTGACTCCACTCCTCCTTGTACAGATGGTGGCAACGAGGAGTCCGACTTTCCGGAGCTGATAACAGCGCGGGAGTGGTCTGAGGACGACGAAGGCCctgaggatgatgatggtggtctCAGCAGCCCCTCTATATGGGGGACCCCACGCCAGAACTCCTTTGAGCTCACATTCTCCTACATCGCCTTCTCCGATGGAGAGGGTTCATCACGCAGAGACTCGGGCCGGCGCAGGACAGGGGGCAGGGGGAGGCGGGGCTCACTGCAAAGAGTGGACACTTTGGAAACACTCTTACCTCCAGAGTCCCCCACTGCCGTGTGGGACCCACATACCTTTCTGAGTGGAGATGGGGAGCAGGAAGTGGAGCAGGCTGGGGAGCATTCAGAACTGTCCCAGAACATCCAGAGGACTCTAGAAAACCCCATTCAAGATACATCAGACACTCCTGATAAAGACACGACAACAGCGGGAGAAGAGGAGGAAATCTCAGGGAGCCACTCACACTGCGTTACAGAGAGTTTTGAAATTCAACAGCTCCATGGATCAGAGCTCCCTGTCACCACAGAAACCACGGCCACATCGCAGGCTGAGGACAGGACACGCCTCTCACTTGCTCCAATTGGTCAAAACACTCAGGAAGAGCTGACCCGAGAACGATGGATTTCTACTCTCGACCTATCAGAGGGCCAGACCATCCACATCCATATAGCAGttaTGGACCTGATCTACTGGAAGGACATGGAGCGGACGGGCATGGTCTTCACCGGGTTGGTGGTGGGCCTGCTCTCCCTCTTCCAGCTCAGCATCATCACAGTGGTCTCCACTCTTTCACTGGCCATCATGTGCTTCACCATCTCTGTGCGAATCTACTGCAAACTGCTGCACTCCCTGCAGCTCAGAGATGGTGCACATCCCTTCAAGTCATACCTGGAAATGGACATTGGCCTGGTTGGTGAACAAGCTGACCAGTACATGCAGAGGGGAATCGTCCTGATCTACTCTGCTCTGGACACACTGAAGCGCCTGGTTTTTGTTGGAAGCCTGTTTGACTCTCTCAAGTTTCTGCTGCTGGTGTACTTGGTGACGTATCTGGGAGCCCTGTGCAATGGCCTTACTCTGCTAATCATTGGTGTGATTGCAGtcttctctgtccctctcttctACACTCGACACCAGGAAAAAGTGGACACCATCTTGGCAACAGTACAAGCCCATGTTGATAACATTAAGGACATTCTGAGTCGACTGGTCCAGGGTGGTGGTCCTCCTCCTGACCCCACCCCAGGTGGAGCCAAACCCAAAAGTCAATGAGGTGGAGTCACAGAGAAGCAGAGAAGTCATCAGAGGAAGAAGGAGGAGCTATAGGCTGTCACTCAGATGTCTTAATCAACTGTTTGGAGCACCACTTTCAGAATAATACAGGATGAATGAGATACTTGGCACGAGAATAAGGATCTATAAATGATGCACAGAAACCACCGTGGAGGTGCAGTTTGATTTTAATGTGTGGTCTTTGGTAATGTGTGGCTCTTGGGTGATCAGTGGAATCCTGAACGTCTGTCTGGAAAGAATTGGATGGAAACTGACGATGTCTTTGAACCATCAAGCCTTGAACATGCAGACTGGAGCAccagaaccttttttttaaacacgaATGACTGAAGTCTGCACTAAAGATGAGCCAAAACCATGTAGCGCAGGACCAGTTTACCAGGTCATCCCAGGTcatctttcacttttaacagttttaaagagaatggcgtgtgtgtatgtgtgcagttTTGGACATGCAGCTGAATTCCTGTTAACACATGTGAGAGATATTAAAACTACAatgccattttattttattcatcatttTCATTGTTTCCCATTGTCTATTTAAATCCGTTCTTTTAACAAGACCCCTTTAAAACAAAGCTTATTTACATATAGTTTTGAAGTCATATGGCATCCACCaataaaaagtgtaattaacaag
>XM_022686557.1
AAAAACAGCTGCAGGGTCCTGGGGCAGAGCAGGGGGACAGAGATAGGCTCAGGAGAGGGCTCACCCTCAGGCAGCTAGCAGGATGGCCAGTAAAGttaTGGACCTGATCTACTGGAAGGACATGGAGCGGACGGGCATGGTCTTCACCGGGTTGGTGGTGGGCCTGCTCTCCCTCTTCCAGCTCAGCATCATCACAGTGGTCTCCACTCTTTCACTGGCCATCATGTGCTTCACCATCTCTGTGCGAATCTACTGCAAACTGCTGCACTCCCTGCAGCTCAGAGATGGTGCACATCCCTTCAAGTCATACCTGGAAATGGACATTGGCCTGGTTGGTGAACAAGCTGACCAGTACATGCAGAGGGGAATCGTCCTGATCTACTCTGCTCTGGACACACTGAAGCGCCTGGTTTTTGTTGGAAGCCTGTTTGACTCTCTCAAGTTTCTGCTGCTGGTGTACTTGGTGACGTATCTGGGAGCCCTGTGCAATGGCCTTACTCTGCTAATCATTGGTGTGATTGCAGtcttctctgtccctctcttctACACTCGACACCAGGAAAAAGTGGACACCATCTTGGCAACAGTACAAGCCCATGTTGATAACATTAAGGACATTCTGAGTCGACTGGTCCAGGGTGGTGGTCCTCCTCCTGACCCCACCCCAGGTGGAGCCAAACCCAAAAGTCAATGAGGTGGAGTCACAGAGAAGCAGAGAAGTCATCAGAGGAAGAAGGAGGAGCTATAGGCTGTCACTCAGATGTCTTAATCAACTGTTTGGAGCACCACTTTCAGAATAATACAGGATGAATGAGATACTTGGCACGAGAATAAGGATCTATAAATGATGCACAGAAACCACCGTGGAGGTGCAGTTTGATTTTAATGTGTGGTCTTTGGTAATGTGTGGCTCTTGGGTGATCAGTGGAATCCTGAACGTCTGTCTGGAAAGAATTGGATGGAAACTGACGATGTCTTTGAACCATCAAGCCTTGAACATGCAGACTGGAGCAccagaaccttttttttaaacacgaATGACTGAAGTCTGCACTAAAGATGAGCCAAAACCATGTAGCGCAGGACCAGTTTACCAGGTCATCCCAGGTcatctttcacttttaacagttttaaagagaatggcgtgtgtgtatgtgtgcagttTTGGACATGCAGCTGAATTCCTGTTAACACATGTGAGAGATATTAAAACTACAatgccattttattttattcatcatttTCATTGTTTCCCATTGTCTATTTAAATCCGTTCTTTTAACAAGACCCCTTTAAAACAAAGCTTATTTACATATAGTTTTGAAGTCATATGGCATCCACCaataaaaagtgtaattaacaag
>XM_022686605.1
GGCTCACCCTCAGGCAGCTAGCAGGATGGCCAGTAAAGGTGAGGAGCGTGAAAATCTGTGAAAGGACAGCTAAGCCCCCTCCGTGGGGTGCGTCGTCGCAGAAGGAAATGTGATCTTTAGGTGGGAGTATTTGTAACTTAGAGGGTGGGCAGCCTGGACAGCCTGGAGCTGTCGAGTGGCTTCACTTCTCTAGTGACAGGAGCTGGGCTCTGGGTGGTCGCTCCACTGTAGAGGTGCAGTGGTTCAGGAGGAGGttaTGGACCTGATCTACTGGAAGGACATGGAGCGGACGGGCATGGTCTTCACCGGGTTGGTGGTGGGCCTGCTCTCCCTCTTCCAGCTCAGCATCATCACAGTGGTCTCCACTCTTTCACTGGCCATCATGTGCTTCACCATCTCTGTGCGAATCTACTGCAAACTGCTGCACTCCCTGCAGCTCAGAGATGGTGCACATCCCTTCAAGTCATACCTGGAAATGGACATTGGCCTGGTTGGTGAACAAGCTGACCAGTACATGCAGAGGGGAATCGTCCTGATCTACTCTGCTCTGGACACACTGAAGCGCCTGGTTTTTGTTGGAAGCCTGTTTGACTCTCTCAAGTTTCTGCTGCTGGTGTACTTGGTGACGTATCTGGGAGCCCTGTGCAATGGCCTTACTCTGCTAATCATTGGTGTGATTGCAGtcttctctgtccctctcttctACACTCGACACCAGGAAAAAGTGGACACCATCTTGGCAACAGTACAAGCCCATGTTGATAACATTAAGGACATTCTGAGTCGACTGGTCCAGGGTGGTGGTCCTCCTCCTGACCCCACCCCAGGTGGAGCCAAACCCAAAAGTCAATGAGGTGGAGTCACAGAGAAGCAGAGAAGTCATCAGAGGAAGAAGGAGGAGCTATAGGCTGTCACTCAGATGTCTTAATCAACTGTTTGGAGCACCACTTTCAGAATAATACAGGATGAATGAGATACTTGGCACGAGAATAAGGATCTATAAATGATGCACAGAAACCACCGTGGAGGTGCAGTTTGATTTTAATGTGTGGTCTTTGGTAATGTGTGGCTCTTGGGTGATCAGTGGAATCCTGAACGTCTGTCTGGAAAGAATTGGATGGAAACTGACGATGTCTTTGAACCATCAAGCCTTGAACATGCAGACTGGAGCAccagaaccttttttttaaacacgaATGACTGAAGTCTGCACTAAAGATGAGCCAAAACCATGTAGCGCAGGACCAGTTTACCAGGTCATCCCAGGTcatctttcacttttaacagttttaaagagaatggcgtgtgtgtatgtgtgcagttTTGGACATGCAGCTGAATTCCTGTTAACACATGTGAGAGATATTAAAACTACAatgccattttattttattcatcatttTCATTGTTTCCCATTGTCTATTTAAATCCGTTCTTTTAACAAGACCCCTTTAAAACAAAGCTTATTTACATATAGTTTTGAAGTCATATGGCATCCACCaataaaaagtgtaattaacaag

Function

NR:

description
PREDICTED: reticulon-2-like isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260901.3 True 2111 mRNA 0.49 10 13003537 13028805
XM_022686557.1 False 1364 mRNA 0.46 7 13014605 13028805
XM_022686605.1 False 1523 mRNA 0.47 7 13014662 13028805

Neighbor

gene id symbol gene type direction distance location
trappc4 trappc4,LOC107561742,LOC106612982 coding upstream 210234 12788901 ~ 12793303 (+)
sacs sacs,LOC107670382,LOC107724954 coding upstream 249637 12708209 ~ 12753900 (+)
mipep mipep,LOC107724959,LOC106581117 coding upstream 334768 12641165 ~ 12668769 (+)
LOC103047626 LOC103047626,LOC108426971 coding upstream 365278 12623464 ~ 12638259 (+)
LOC103046499 cadm2,cadm2b,LOC103046499,LOC108426969 coding upstream 401001 12288119 ~ 12602536 (+)
LOC103023447 LOC108426981,LOC108278228,LOC107380297,LOC103474627,LOC102221837,LOC107746191 coding downstream 5675 13034480 ~ 13042611 (+)
LOC103022831 rab4b,LOC103022831,LOC108426982,LOC107567272,LOC107592649,LOC103378089,LOC107699834,LOC100706225 coding downstream 95977 13124782 ~ 13150184 (+)
arhgap35 arhgap35,LOC107670284,LOC107726507,LOC107699836,LOC107574404 coding downstream 157316 13186121 ~ 13330297 (+)
npas1 npas1 coding downstream 355172 13383977 ~ 13455473 (+)
prpf8 prpf8,LOC107685080 coding downstream 634641 13663446 ~ 13678351 (+)
G3323 NA non-coding upstream 4091 12999045 ~ 12999446 (+)
LOC111197033 NA non-coding upstream 11414 12989585 ~ 12992123 (+)
G3232 NA non-coding upstream 282697 12714618 ~ 12720840 (+)
G3205 NA non-coding upstream 345230 12577080 ~ 12658307 (+)
G3179 NA non-coding upstream 750925 12246977 ~ 12252612 (+)
G3342 ap2s1 non-coding downstream 46792 13075597 ~ 13205546 (+)
G3377 tmem160 non-coding downstream 434290 13463095 ~ 13464950 (+)
LOC111188402 NA non-coding downstream 438868 13467673 ~ 13492977 (+)
G3381 NA non-coding downstream 453244 13482049 ~ 13485913 (+)
G3388 pitpna,pitpnaa,LOC107743636,LOC107669737 non-coding downstream 498402 13527207 ~ 13541209 (+)
G3313 sept5b,LOC108425237 other upstream 19268 12982625 ~ 12984269 (+)
G3096 NA other upstream 1076287 11924450 ~ 11927250 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other upstream 1579086 11405543 ~ 11424451 (+)
G2910 sarm1,LOC107756984 other upstream 1714691 11288131 ~ 11288846 (+)
LOC103029949 slc46a1 other upstream 1724360 11258446 ~ 11279177 (+)
LOC103035587 NA other downstream 1189002 14217807 ~ 14244380 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other downstream 1415753 14444558 ~ 14505015 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other downstream 1811488 14840293 ~ 14845626 (+)
G3736 NA other downstream 1932368 14961173 ~ 14963583 (+)
G3790 NA other downstream 2009750 15038555 ~ 15038914 (+)

Expression


Co-expression Network