LOC103033229 (psa6,LOC103033229,LOC106612618,LOC105026880,LOC106580837)


Basic Information

Item Value
gene id LOC103033229
gene name psa6,LOC103033229,LOC106612618,LOC105026880,LOC106580837
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18274825 ~ 18281029 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601482.2
gtgaaagtagTGAAGATCAGGAAGCAGAAGAGCTTATTCACTCTGCGCTCACTCGTGTGATTATACACTCTGCTCACTCTCCCGCTCTCACTCTCCTCAATCGTCTCACTCTCAGCTCGAGGCTGGAGACATGTCTCGAGGAGCTAATGCAGGGTTTGATCGACACATCACTATCTTCTCCCCGGATGGGCGACTCTACCAAGTCgAGTACGCCTTTAAGGCCATCGCCCAGAGCGGCCTGACCTCGGTGGGCATCAGGGGGACAGACTGCGCTGTGGTCGTCACACAAAAGAAAGTTCCGGATAAGCTTCTGGACCCTTCTACCATTACAAACATATTCCACCTCACGCCACGGATTGGCTGCGTAATGACTGGACATCATGCGGACAGCCGTTCTCAGGTGCATCGTGCTCGGGTCGAGGCCGGAGAGTGGAAGTATAAGTTTGGGTATGACATTACGGCGGACATGCTGTGCCGACGCATCGCTGACATCTCTCAGGTTTACACACAGAACGCAGAGATGAGACCACTCGGCTGCTGTATGATCTTGGTGGCAATGGACCCTCAGTTGGGACCCCTGCTGTATAAGTGTGACCCGGCCGGATACTTCTGCGGCTTCCGAGCCACGGCAGTCGGAGCCAAGCAGACGGAGGCAAACAGCTACCTGGAGAAGAAGCTCAAAAAACGACCAGAGCTCACCTTCGACCGGACAGTGGAGATGGCAATCTCCTGCTTATCATCTGTTTTATCTCTGGACTTTAAGGCCAGTGAATTGGAAGTGGGCGTGGTTAGTAAAGAGAACCCAAAATTCAGaactcTAAAAGAGGCGGAGATCGAGGCTCACCTGGTGGCGATAGCTGAGAGGGAGTAGacagGAAACTCTGACTGACCCACAGCACACCTGTTACCCTGCAaagaccaccaccaccagctgATCACCCATCAAATCAATCagttttattagaaatatttaccctgtttgtgttttagcatcacttcaataaaacaaataaatctg

Function

NR:

description
proteasome subunit alpha type-6-like

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02730 PSMA6; 20S proteasome subunit alpha 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601482.2 True 1018 mRNA 0.51 8 18274825 18281029

Neighbor

gene id symbol gene type direction distance location
LOC103032687 gmfg,LOC103032687,LOC108277844,LOC107757325,LOC107679065,LOC107090391 coding upstream 18482 18250923 ~ 18256343 (+)
sidt2 sidt2 coding upstream 108148 18138024 ~ 18166677 (+)
LOC103030597 LOC108412477 coding upstream 142872 18124694 ~ 18131953 (+)
LOC111192370 NA coding upstream 252436 18017759 ~ 18022389 (+)
lsamp lsamp coding upstream 401009 17454350 ~ 17873816 (+)
LOC103036794 map4k1,LOC108443018,LOC107757316,LOC107679433,LOC101883459,LOC104956018 coding downstream 51310 18332339 ~ 18386319 (+)
LOC103034176 LOC108443019,LOC107663551,LOC107572208,LOC107557657,LOC107679443,LOC108277854 coding downstream 108399 18389428 ~ 18400138 (+)
trnaw-cca NA coding downstream 120025 18401054 ~ 18401125 (+)
trnag-ucc NA coding downstream 122676 18403705 ~ 18403776 (+)
LOC103035466 NA coding downstream 205977 18487006 ~ 18499131 (+)
G4563 NA non-coding upstream 96742 18177608 ~ 18178083 (+)
G4549 NA non-coding upstream 209064 18063434 ~ 18065761 (+)
G4531 NA non-coding upstream 236081 18034511 ~ 18038744 (+)
G4460 NA non-coding upstream 265478 17929724 ~ 18009347 (+)
G4589 crx,LOC108443020,LOC107395012,LOC106935423,LOC106914190,LOC103155943,LOC107094494 non-coding downstream 17487 18298516 ~ 18302148 (+)
G4587 NA non-coding downstream 24329 18305358 ~ 18306149 (+)
G4591 NA non-coding downstream 33525 18314554 ~ 18328007 (+)
G4608 NA non-coding downstream 435932 18716961 ~ 18717640 (+)
G4611 NA non-coding downstream 475731 18756760 ~ 18758132 (+)
G4550 sik3 other upstream 201162 18071964 ~ 18073663 (+)
LOC103039709 NA other upstream 262722 18010178 ~ 18012103 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 1651756 16619046 ~ 16623069 (+)
G4221 NA other upstream 1728971 16542942 ~ 16545854 (+)
LOC103040601 NA other upstream 2448722 15781638 ~ 15826103 (+)
G4612 NA other downstream 478346 18759375 ~ 18759858 (+)
G4775 LOC108411134 other downstream 879702 19160731 ~ 19165631 (+)
LOC107197594 NA other downstream 2268162 20549191 ~ 20551635 (+)
LOC103037169 NA other downstream 2277494 20558523 ~ 20582874 (+)
G5026 NA other downstream 2702678 20983707 ~ 20999200 (+)

Expression


Co-expression Network