LOC103045400 (zgc:171927,LOC108425914,LOC107672095,LOC107588334,LOC108278279,LOC107683438,LOC107592930,LOC107757416)


Basic Information

Item Value
gene id LOC103045400
gene name zgc:171927,LOC108425914,LOC107672095,LOC107588334,LOC108278279,LOC107683438,LOC107592930,LOC107757416
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14875553 ~ 14880632 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602301.2
CTTGATCAGTGGCTTTAATAATTAATGGAGCATTTTCTGAGCTCTCAGTAGCCAGTGTTGTTGCTGTTTGCTTTTCTGAAGGATAAAGACACAGCATAGTCTTGAACATAAAAGATAATATTGTCCTGCTTTTTGGAACAACGCCATTGATTGGCTTGAACATGAATCCTGAATATGACTACCtgttcaagctgctgctgattggaGATTCCGGAGTGGGAAAGTCATGTTTACTACTACGTTTTGCGGATGACACTTATACTGAAAGCTACATCAGCACCATTGGGGTTGACTTCAAAATCAGGACTATTGAAATGGATGGGAAAATAGTAAAACTGCAGATTTGGGATACAGCCGGTCAGGAGAGATTTCGAACTATAACATCCAGCTACTACAGAGGTGCCCATGGGATCATCATTGTGTATGATGTTACTGACCAGGAATCCTTCAATAATCTGAAGCAGTGGTTGGAGGAGATTGATCGGTATGCATGTGAAAATGTCTCCAAGTTGCTGGTGGGGAACAAGAGTGATTTAACATCAAAAAAGGTGGTGGACTTCACCACTGCCAAAGAATTTGCTGAGCCACTTAAAATTCCATTTCTTGAATCAAGTGCAAAGAATGCAAGCAATGTGGAGAAGGCCTTTTTAACCATGGCCTCAGAAATTCAGAAGCGACTCGGGTCAGAGAACGTTCAGAACGAGACTGTAAAAGTGGGAGCCAAAATAAACAGTGCTCCCCTGTGGCCTGGAGGACAGAGTGGGACTGCGGAGGAGGTCAGCACCTGCTGTTAGTGCTTACAGGTTTAAATTCAGGGTATTCTAATTTTGAAAAGGAAActtttgtgaaaaaatatgatttttagtttatactGATGAACAGTGGCCTTACTAACTGATTGCCTGTTTTCTGTGTGACATATAACTGAGTTTAAGATTTGCCTTCTTACTGCGTTTCCCTTTCTGTTAGGTAAAACAAGTATAGGATTATTTGCCTTTTTTACAGTGGTGTTCATATTATAAGCCAAATGGCATGCAGGCAAGTGTTTGAGCTTATTGGATCACCCATTCTTGTCTGCACAGTTTAGTATACGTAGAACCACATTCACCAGATCTTGGTGAACTGGCAATAAATGTAGGCTGCTTTGTTTAGAAACGACAACACTGCTGGCCATGTTGCTCATTATCCATTTCTATATCATTATTAATctgatataaaatgtaattttagctGCAGCTGAAATtgactaaatattttataagtTGTTAAGTCTACAGTTCCTCCCCCTtaatttgtttactgtttattgttatCTATAGGACAGATCTTCTTCTATCACATAAATTCCACAGACTGGTAGATCTGACTGATAATGTAGTGCTGAGCATTTGCTGGGATTTGAACTTATGCTCTCCTTATATTTGATGAGCAGCAGATCAAAGGGCCGCTCtagaactgaaaaaaatgtatgtggTTTCTCAGCTCTCAAGTGGAGTGACTGTCTAACTGCCTGCCTGTCAAGAAATGGGAGATTATTAGCTTAAATGCAGCTCCTTGACCGAACTGAGTTGTTCAAATAAAAATTGGccatttttagcatttattcattatttgtgCAGCTCACAATGTATAGAATCAGTTTGTGGATTTTACTAAGCAAGAAAACAAGACCTGAACTAACCTGATTTCTTAACTAAGATAAAGATATTAGACATGTTTGGCATCAAATCTAATTCTACCAAAGGTAAAATTCTCATTTTCAAGTATCACTggaaaaatttgtttttttctatgtaCATTTCTAAATAACAGGTATTTGCTTTTGAAGGAAAACCCCATCATCTGGCATAGAATATTTAGATACACAAAGACAAATGAAAATGGCAATCACgtgttttaaaaattatgtaCTTTATACTTCTTCAAATAAACAATGTACACACATTGTAA

Function

symbol description
zgc:171927 Predicted to enable GTPase activity. Predicted to be involved in autophagosome assembly and intracellular protein transport. Predicted to be active in endomembrane system.

NR:

description
PREDICTED: ras-related protein ORAB-1-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602301.2 True 1950 mRNA 0.38 6 14875553 14880632

Neighbor

gene id symbol gene type direction distance location
LOC103045089 NA coding upstream 76 14870734 ~ 14875477 (+)
LOC103044784 zgc:101731,LOC103044784,LOC108425805,LOC107683430,LOC107757427,LOC107669759 coding upstream 6958 14859897 ~ 14868595 (+)
LOC103043366 LOC108425806 coding upstream 16144 14847183 ~ 14859409 (+)
LOC103043061 LOC108425915 coding upstream 53454 14815554 ~ 14822099 (+)
LOC103042749 NA coding upstream 72592 14766814 ~ 14802961 (+)
LOC103046009 vezf1b,LOC108425912,LOC107756309,LOC107587351,LOC107682824,LOC107672112,LOC108435808 coding downstream 6667 14887299 ~ 14903497 (+)
LOC103046311 cuedc1,cuedc1b,LOC107672109,LOC107587359,LOC107757269 coding downstream 26151 14906783 ~ 14938834 (+)
wsb1 wsb1,LOC107756317,LOC107587373,LOC107682796,LOC107746651 coding downstream 60048 14940680 ~ 14955344 (+)
LOC103047124 ksr1 coding downstream 92357 14972989 ~ 15033659 (+)
LOC103021895 NA coding downstream 170842 15051474 ~ 15066217 (+)
G3648 eml2,LOC108277999 non-coding upstream 281494 14592933 ~ 14594059 (+)
G3575 NA non-coding upstream 362764 14511140 ~ 14512789 (+)
G3537 NA non-coding upstream 403801 14312208 ~ 14471752 (+)
G3787 NA non-coding downstream 154134 15034766 ~ 15035187 (+)
G3788 NA non-coding downstream 155310 15035942 ~ 15036582 (+)
trnae-uuc_1 NA non-coding downstream 165681 15046313 ~ 15046384 (+)
G3794 NA non-coding downstream 188798 15069430 ~ 15069802 (+)
G3800 NA non-coding downstream 240102 15120734 ~ 15134707 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 29927 14840293 ~ 14845626 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other upstream 370538 14444558 ~ 14505015 (+)
LOC103035587 NA other upstream 631173 14217807 ~ 14244380 (+)
G3313 sept5b,LOC108425237 other upstream 1891284 12982625 ~ 12984269 (+)
G3096 NA other upstream 2948303 11924450 ~ 11927250 (+)
G3736 NA other downstream 80541 14961173 ~ 14963583 (+)
G3790 NA other downstream 157923 15038555 ~ 15038914 (+)
LOC103023550 nf1 other downstream 192208 15072840 ~ 15162956 (+)
LOC103040601 NA other downstream 901006 15781638 ~ 15826103 (+)
G4221 NA other downstream 1662310 16542942 ~ 16545854 (+)

Expression


Co-expression Network