LOC107196838 (LOC107196838,LOC108410423)


Basic Information

Item Value
gene id LOC107196838
gene name LOC107196838,LOC108410423
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24166477 ~ 24170637 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602650.2
atgGCGCAGCAGCAATAATACACAGAATATATGCAttgagtaaaatataaactgtTGTTGAtgttttaatcagatttaatcAGTGATGACGTTTGTTTTCTagtattttggtctctctcCATTAAAAGATGGTCTTGCCTATAAGGACTTTAGTTATATACCTCTAAAATCATTCAGCTCTGTTATtagacattatttaaaaataaaaacatatcagACTGCCTTTATTGAGTTTCATACAGCATGTTATCTGTGTTATCTGTAAAACTGTTTACAtaagtttaaatttaatttcactgTAATTTAAATTCAGAAACGTTTCCTGATTAAAGCCTAGCTTCCAGCAGAGCAGATTATGAAGTGGTTTACCTGAGTCAGGTGTTTCAGTGCAGGGAAAACATGAAATTAGATGCCAGAATAAACGCTACATCAGATTCTTGTATCGAGACTGATGGAGGCATCAGGGTTCACATGACGTTTGTCTCTAAGCTGGAATTTAATGTGGTTTTGTAACTTTAAGCTTTGTGTGGAATCATCAGACTGGTTCCTACAGGCAATGATTTGTTGCCAGGTATTCAATGCTCTCATTTTAAGTCAGGCAGTGGAGGAATTatgaaagaaaggaaaacaaTATGAATAACTAGACAACAAAAACTCTGATTTTAACTGTTGATAAAAGTTGAGCCGTTGTCTAACAGACAAACACATTTCAAAAACTGCATTGCTGCATTAACTGCACTACCTTATCCACtgctttgtgtgtttatattgtgtgtaatatacgtgacatgccaaaaaaaaatagaaataagaagtGTACAGAAGCGTCACAGTGTAGACTATAGAGTTAGTTTAGAGCAGTGTCCtctgtttcctctgttgtacaggatatgtTCATCAGCCACAGAAACCGCAatttaacagctccccagataagagaacCTAAATACTTCACATTCTTTTTCTACCAAACTTAGGCAGAcaagttttgtgtgtgtgtgtgtgtgtgtgttgaagacGCTCACTGGGTCTATTTACCAGTTTCACACCTGCAGAATACCCAGATACCTGtgaacacacactaacacactctcacacactattGTCTCCCATCTGCTGGCTGCTGTTTAATATTGAATGTTCTGTAAACACTGTAGTACTGTGTGACTGTAGTACTTTATGACTATGAAATCTGAGACTGTGTTTAACACTGTTGCTAAAGAGCTTCAGCACAAACTATAAACAGGGCTTTTTTAGGCCTAGACTTGGATTAAACAATTCTAGTGAAAGGAAAATATTGGATCAGGAAACCATAAACAATATCTTTTAACTTAAATAGAGTAAAATATGTTTGCAGAGAACAGTTGTGTATTtatgatttcttttatttgaatCATTGAAATTTGGATTATTAGCTTATTAGTATTATGTTCCCAAAATGCTCATTGGGGTTAATTATACATATGTGAACTAAAGGAACCTGGTTTtactttcttgtatttttttttttttttttttttccaatcatGTGCTCTGAGAAACAGTGACAGCAGTTTCTGTCTTTGTTTGAACAATTCCAGTAATGCCAGTTTCTTCTTCTGATGCAAATAAACCAGTCGGGGCACATAGCACTGTGTTCTCGAGGTGTAAAACATCCTCATCTGACGTTCTGACACCCATTCAGGACAGAGACGGTACGAGAGcactatagagagagagagagaacgtcTCGTGAGAAAGTCTCGTCCTCCAGTTCTTCTCCTTTCTCCTGTTGGAAGCGCCCGTCGCCATGTCGTACACGGCCGGCTCCTACGTGGACAAGTCCTACGGGGGCCAATCGTACTTAGGGAAGTCCCTCCCGGGCAGCGCCTACACGGGGTACGATGACCAGACGGCCAAGACTCTGTACGAGGAGCAGCTCCagatggagaagaagaagaggagggagGGCATGCACTGCGAGGTGGTGGCCCTGGTCATCGCCTTCGTGGGCTTAGTCGGCGTCGCTGCGGTGACGGGCCTTCCCATGTGGAAGGTGACGGCCTTCATCCAGGAGAACATCATAGTCATGGAGACTCGCTGGGAGGGTCTGTGGATGAACTGCTTTCGACAAGCCAACATCCGGATGCAGTGCAAAGTGTACGACTCCCTGCTGTACCTTCCGGCAGAGCTCCAGGCCGCCCGGGGCCTCATGTGCAGTGCTGTGGCCCTGGCCGCCATTGGCTTCATCGTCGCATCTGTGGGCATGCGATGCACTCGGCTGGTCGACTCTCGGCCGCGTGTCAAACATGTCGTTCTGGTGACCGGAGGATGCCTCTTCCTGGCTGCCTGCCTggccaccatcatccctgtctCCTGGACGGCTCACGTCATCATCCAGGACTTCTACAACCCTCTGCTGCTGGACGCCCAGCGCAGGGAGCTGGGCGAGGCGCTCTACATCGGCTGGGTGACAAGCGCCCTGCTCTTCATCGCCGGAGTCATCCTGCTGTGTCGACATGCTCCCCGAACCCAGGACAAGGAGGACATCTCGGTACTGTACCGGCCCGGCTCTGCTCCCTACACCTACAAACCTGGATACACCTACCAACCCGCCTATACCTACCAGCCGGGATACAGCTACCAGCCAGCATACACCGGCCCACCGCCACCAGGCTCAGTGGCCTACAGCCGGCCAGCCTACTGAAGCTGAATAAGGACgggttcaggtttaggttcttGGACCTAAAGAActacatgtagaaaaaaaaaactttgcatcTTGGATATGCATCTTCTGTGAGATCCAGCTCACTTACTCACTTTTCACTATTCTTCATGCCTAGTAGTTCTGAAAGCTGATTGATTAATTTACAAGTACCAGGTACCAACAGATTAGATATTCCTAGGCTGAATCTCAAACAGCTACTCCCTACTCGAAAATGCACCAGAGCCTAGTAAAGTGATCACTGACTGATTTGACACAACTATTTTTAGCATTTGTAGGCCACCCCAAACTGATTTAcggtattaaaacatttattattatatttacccAAAATAGGATAGTGTATTGTAGATGATCCTTTGTTTTAAGGTGAGATGACGTATATACATGATAAAATTGATACTAAGCAGCATTTATTACAAACCTGTAAAAAGTTTTATGGTTGTAAAACTGTAGGTTTATTTAAATTCTCATAACTAACACCTATATACCTTTTTAAGAGTAAAGTcttttttaattctataaatgaatttaaatcCCCACCAAGACATCAAAAAATACCAGAGAGAccacatacactgtaaaatattaaacttacttATATTAAACTatctttgaatttttttttttttattgttaaagttGATTTAGAAAAGTGTCAGTATATAccgtatattttaatattaattaacaagAATAAATCTTGAAGAAATTTGATACCAAGCTCTCTTGCCCAAGATagactttttacattgtaaacacTGCTGTGTTCaccttgtatatatttatttaacgtTATGTAACATGTTCTCACTAAAACAAAGGTTGTCAAAGCAGTTAATCATGGACGGTGCAATGCATTACATAGGAATTACTCAGCCTTTTGAGATTCAGCCCTAACTCCATTATTCAGACAAAACCTGCTCTTCATTCCATTGAAGTTATGAAGAGTGTTAAAGATCAGCATACCAAATGCATTAACTCATACAGCAGTTACCGTCAGAGAATCTTTCCTTCTTAACAAGTCAGTGTTaatcaatcattttaaatgaaaatatcaaACTTGATCTTATAACACTattgttaaatttgtttttggTGAGAGAATTACATGGAACGTTTTGAAAGGATAAAATGTAAGAactgtaagaatttatttatttatatatatatatataatatatatatatatatattatatatatatatatattatatattatatattatatatatatatatatatatacacacaagatTATACAATGACTGACTACTGAGCTCCTGAAGCTGGTCAATCGCTTCCCCTAAGGACATTTTTCCAAATCGTAAAGTACTCTTATTGTTCAAATTTGTCAACTTTGTTTTTAAGCACTGTTAAAATGATAAATCTATgattttatatgaaaaaaataaaaatgaaaaataaataaatataaacgtGTACAGACAAA

Function

NR:

description
claudin-8-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602650.2 True 4161 mRNA 0.39 1 24166477 24170637

Neighbor

gene id symbol gene type direction distance location
LOC111192631 NA coding upstream 5035 24157595 ~ 24161442 (+)
LOC103043883 NA coding upstream 9529 24155639 ~ 24156948 (+)
LOC103042016 NA coding upstream 17906 24129284 ~ 24148571 (+)
LOC103047855 LOC108410431 coding upstream 46179 24102558 ~ 24120298 (+)
ilkap ilkap coding upstream 65244 24094276 ~ 24101233 (+)
LOC103043067 LOC103043067,LOC108410425 coding downstream 2749 24173386 ~ 24175817 (+)
LOC103042333 NA coding downstream 6707 24177344 ~ 24179644 (+)
LOC103021580 grik1b,LOC108410432,LOC107669874,LOC107670116 coding downstream 10922 24181559 ~ 24216852 (+)
usp16 NA coding downstream 65214 24235851 ~ 24248495 (+)
farsb farsb,syfb,LOC107585746 coding downstream 83291 24253928 ~ 24261667 (+)
G6051 NA non-coding upstream 41115 24114947 ~ 24125362 (+)
G6049 NA non-coding upstream 57480 24107964 ~ 24108997 (+)
G5898 NA non-coding upstream 75995 24088651 ~ 24090482 (+)
G5913 NA non-coding upstream 85116 24080638 ~ 24081361 (+)
G5908 NA non-coding upstream 137408 24028653 ~ 24029069 (+)
LOC111192653 NA non-coding downstream 82518 24253155 ~ 24253912 (+)
LOC111192656 NA non-coding downstream 100913 24271550 ~ 24279468 (+)
G6167 NA non-coding downstream 213798 24384435 ~ 24384926 (+)
G6168 NA non-coding downstream 214466 24385103 ~ 24394430 (+)
G6189 NA non-coding downstream 254225 24424862 ~ 24429277 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 259003 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 319110 23839993 ~ 23847367 (+)
G5871 NA other upstream 332647 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 815171 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 1010111 23081391 ~ 23156366 (+)
LOC103027586 LOC108425877 other downstream 1241557 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 1869519 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 2748654 26919291 ~ 26931495 (+)

Expression


Co-expression Network