LOC103041009


Basic Information

Item Value
gene id LOC103041009
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 7015308 ~ 7020982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602872.2
GGAGGTGTATGAGAGCGCGTCGGTGTGCGTGTGCCTGTGTGCAAAAGTGTTCTTTCCCTTTTCAAACCAACCTCTACTCCCCCTGACATCACCGGACTTTCCCCTagtatcatatatatatttctacaaCTCTACATTTCTGTACAAGACAAACCTTCAAACACACAACTCTGAACAAGTACACTGACCATAAGCCTGGTGTGGGGGCTCAAACAACAAACAGCAGCAAACGCATTCAAATATATTTAGACTAACTAAGGCAGAATGCAGAACTACCATATAACAGAGGATCTTGAAGCAGGCATGGGTGGCGTCTACCAAGCCACAGTGCAAAGCGGGAAGCCTTCTAGACTAAGCTGGGCGTGGAAGATAGTGGGTGCCATCTTCTTGATTGCACTCTGTAGTGTGGCGTCTGTCGGGATTGCATGGTACTTCATGAATCACATACAAGGAGAACGCATCTCGGCACTCGGAAGGGCCGCAGAACTTCAAAGCAGCTCAGAACAAGGACCAGTGCATCCGCAGCATATGCTAGCCCAGACAGCCAACAACACAAAGGCTGCCATTCACCTGCATGTTTCAGGTAATGATGACTCTTCCCTGCGATGGGTGAATGATGTGGACCAGTCCTTTGAAATAGGAGGCCTCAAGCTGGAGAACAACGAGATCGTCATTCCATCCGATGGGTTGTACTTTGTTTACGGCCAGGCCTCGTACGAGGTGCACTGCGACTCGAGCGAGGGAGGTCAAGAGCTGAGTTACGAGATTAGCTGGTTTTCTAATGCAGCACCTTCTGCAGACAGAAAGTATCTACTCAACGGAGTCAAGTCTGTCTGCCAGGCCAGCGTGAAAAAGGACGAGGCGGTGTTTGAAGTCATCTATCTCGGAGCTGTCTTTAGGCTTTATAAAGGGGACAAACTGTCGGCAGAGACCAATAACCGTACATACATAGATGCGCAGAGCTCCAAAACGTTCTTCGGAGTGTTTCAGCTGGCACACGCCAGCTGAACGGGACTGTGGGACGATACAGGTCACTTGATGACAAGTTTTGCAAAagacaaaatgttttatgttaaaacATCTGAATTGTATTTTCCTAAGTGGTTACTTTGAACGTATTCATTAGTAGGGATATTAAAACtgttatgtgtatatataaatggtGACTTAAGGGTGATTTGGACAGTTTTTGTGCTTTCTTGATGGAAGACAGTAGTGAAAAAAGACATATGACTTTATGTTTGTATGTCCATTATCCTTAATTCACCCTATAcacattatatgtatatatgacaCATTATATGTGTCAGAACTGCTGcctaaagttattttgtgtatatattgtattagaATGCAATGCCTAGTAGACCTACTCTACCACTAGGCCACTTAGCTGAGAAACAGCTGAGCACTACTCCTCTGAATCCTGCCTAAAATTAAGCTTGTAGATTGATACTGAGAAATATTTAAAGATAGCTCACTACAGAAAGTACTGTAGAacctaaatgttaaaaaatatatgcacttttttgtttgtgtgtttgttagattgttttaggttttaaaagttatttaaaatatgggtgtatttaaatgtgcttatttattgttatatattgtatatttatttaacaaggGTGTGAATGCAATACATGTGTATGtataaatcaatatatataaaaacacaaggTCTGAAAAGTGCTTACTGTATGCTCACTTCATGTGATGGATTTTGTAAGAAGCTGTACTGAGCATTATATGCTCACTAATGTGACTTTATCCAAGtgttttctaatgtttttttttatgataatttttatttttacttttttatatttataccaATGTGATGTAAACTGATGACAAataataaaacctaaaataaaaaagacataatCATGAGTCATTTCCTGAAGACGAACCAAAACCAGctgaaaaaaaagttacaattaaaaaaaaaaaaaaaaaacaacgttaGTGTCTGCTGTGTGAACCAGAACCCACATCCTGCTTCATCTCTTATCTTCCCCTGTTTCCCACCGGCGAGTGATACACACCCGGGGTCAGATCTGAGGATCTAACAACAACCAGATCGCTCGCTTCCTGCCACTTCCTAAGATAATCCAAGAATTAAGTCATTGCAttgtttagatttttgttttttttaagcattacattAGATGAGTTAACTAACTTGTGTGTCTGGGTTGTGAGTCAGCACTGATCAAACAAAGCCAGTGACATCAGCTTAAAGGAGGAaatgcactctaaaaaaaagtgctttagtTGCCCATACCCCCTACAGTATTATGACTGGTGTCCTGCAGCTGAACCAGAACAATAATGCCCTCTACAGGAGACAATAGGATATTTTCTAACTTCCTGGATTTCTAGTGTGTAAGATATTCATTGGAAGTTTaccatattaatataatatatttacttacTTTGAGGGGCTAATacatttacactttatttttaaataaattttcaaagttcatatgtgtgtgtgtgtgtgtgtgtattaaccAGAACCCACAGTTTATATATCACATTTATAATCACActgtaaaagaataaaaaaatatataaaacaattaaatgtatCAAACTCATACATTATTAGTAAACTCGTTCATTTCttttggaaatattttttttttttttttttaccttttattccGTTTTTGCTGCAAAATGAGCTTTTTCAAtttcataatgtattattaaagaaaaaacacatttaaataataaaaacaaaaactgtgtaCCTATAATCAGCCATCtagtaaaacatttaatctttttttttcaaagtctgCTACACAACTTTTAAGGTTAGtgcaaaataatgagttttattGAACCATGACATCCATAGAGTTTGCATAAAGATTACTTTCATAGTATATTTACAATACATATATtaattacaaatacatttttaaaaatgacataGGAACTTGATTATTGGTTTAAAGGTGGAATGGGTTGTAGTACAGTGCACATATCtgataaataaacatttctttaataGAAAGTGATATTATAATTACATACCCTGAGCTAATTTACTGAATATAATGCTTACATGCTGTAGGAACGCAGAGTAGGTAGTGCtctgtttattataaatagGTTCAGCTAAGCAACTAAACAAACCTACTTCTTGCATTTTCTGAACGAGCTTTCGAGAACACAATCATGTAATGTCACAATTTATCAGTTTTTAAAgcgtaaataaataattgtgatGATGAGATTTTCTTCAAACACAACGTTCAGTGTGTCTTATTGTCCTGTCATGTAAAACAAGCATATGACTGAAATATTGCACATCAGTCGCTTTAGTATTCATAATGATTGTCTTTGAATACAAAATGCAATGCCACCCAAACTGATAAACTGAGATATATCATggatcatttaatttttttttccattatatttaatgatACTATTATGTAAAAAGACTAGATACACACTGTCTCTGAATCATCTGAAAAGTGCACAGTTCAATCAAAAGGGTAAAAAGGCTAAAATCTGTTGTGCTAGACCTACAAAGAGATTTACCTTTAGTTGTGCACTGTGTTTTCACCTTTTATTAacatcatatacatatattatactgttacactgtgACTTCTGATATAGGTTAGagggaataaaaaagaaagaaatatatagtTTTTGGATAAATCCCTTAAAcatcaaattattaaataatatcaaACACTCTCTCAGCCAGAGCTACTGGTGATATTCTGGTGATATTTCGCAGAGGAAGCAAGTGTCTAAACAGTCCGTTGTCTGTAagtattttagatttcttaTCCTTCCAACAGAcacatttatttcaatattGCAAATTAAAACCCTTTAGAggtttaaaagattaaaaaagtaaaaaaataattaaacacaggTTGAAAATAACATACTGGTTccaaaaagaagtaaaaaaaaaaagtaaaattcatGTGCACAGATAGAAAGctgtgagaaagaaagacagaagaagATAGATTGGTAGTTTTTTCTTGCCATTATGGATTCGCTtctgtaatataaatatgagGATATGAAGTACTTTTGATTTTATGGATTCACagctaaaaactgcaaaaacatAATAAACCTTGTAAAAGAAACTGTCCCATTTTTACCATATGCCTCAAattatgaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaaa

Function

GO:

id name namespace
GO:0001889 liver development biological_process

KEGG:

id description
K03156 TNF, TNFA; tumor necrosis factor superfamily, member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602872.2 True 4242 mRNA 0.35 4 7015308 7020982

Neighbor

gene id symbol gene type direction distance location
LOC103037029 NA coding upstream 53750 6946823 ~ 6961558 (+)
LOC103031157 LOC108442282,LOC107594665,LOC107710606,LOC107700523 coding upstream 609326 6381786 ~ 6405982 (+)
LOC111194277 NA coding upstream 687397 6317305 ~ 6327911 (+)
LOC103031751 NA coding upstream 1359253 5631396 ~ 5656055 (+)
LOC103026943 LOC103026943,LOC108278393 coding upstream 1396472 5613743 ~ 5618836 (+)
LOC111194639 NA coding downstream 141264 7162246 ~ 7167800 (+)
LOC103039155 NA coding downstream 160800 7181782 ~ 7188573 (+)
LOC103038844 NA coding downstream 168498 7189480 ~ 7202566 (+)
LOC111192949 NA coding downstream 249883 7270865 ~ 7273307 (+)
LOC103026472 LOC108432989,LOC108277724 coding downstream 296031 7317013 ~ 7779860 (+)
G1980 NA non-coding upstream 132969 6880551 ~ 6882339 (+)
G1975 NA non-coding upstream 182003 6832936 ~ 6833305 (+)
G1962 NA non-coding upstream 308933 6702100 ~ 6706375 (+)
G1963 NA non-coding upstream 345506 6669573 ~ 6669802 (+)
G1947 NA non-coding upstream 396642 6618352 ~ 6618666 (+)
G2025 NA non-coding downstream 110225 7131207 ~ 7133196 (+)
G2032 NA non-coding downstream 126778 7147760 ~ 7198915 (+)
G2039 dhx16,LOC107704755 non-coding downstream 155601 7176583 ~ 7177824 (+)
G2047 NA non-coding downstream 185365 7206347 ~ 7206678 (+)
G2124 NA non-coding downstream 601829 7622811 ~ 7623261 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 460858 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 600514 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 1312125 5681026 ~ 5703183 (+)
LOC111192942 NA other upstream 1738320 5250484 ~ 5276988 (+)
LOC103026740 NA other upstream 1771121 5171375 ~ 5244187 (+)
G2304 NA other downstream 1539084 8560066 ~ 8560478 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 1711741 8732723 ~ 8734952 (+)
lyrm9 lyrm9,LOC102789908 other downstream 1923479 8944461 ~ 8957392 (+)
G2509 NA other downstream 2610883 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 2613111 9634093 ~ 9743491 (+)

Expression


Co-expression Network