fzd4 (fzd4,LOC107600811,LOC107551868)


Basic Information

Item Value
gene id fzd4
gene name fzd4,LOC107600811,LOC107551868
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22200757 ~ 22210913 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605665.2
CGCAGAGAGTGGGGTAGTAGAGTAAGATCAGGAGCGCGCGGGGGAGAGTAGAGCTACAGCGCGCGGggtgtgagctgtgtgtgtgtttatagagtgtttagtgtatatatagtctgtgtgtttatctgtggATCTGCTTCCTCGTGCTGCCCGGTGGTCCTCATGGCTCGCGCTGCCCCCGCGGGTctcgcgctgctgctgctcgcGCTGGGGAGCGGGCGCGCGCGCGCCTTCGGTGTGGATGAGGACGCGCGCTGCGAGCCCATTCGCATGGCCATGTGTCTGGACCTGGGATACAATCAGACGCGCATGCCCAACCTGGTGGGGAACGTGCTGCAGGCGGACGCGGAGCTGCAGCTCCAGACCTTCACACCGCTCATACAGTACGGCTGCTCCAGCCAGCTGAAGTTCTTCCTGTGTGCAGTGTATGCACCCATGTGCACAGAGAAGGTTCCAGTAACCATTGGTCCATGCGGCAGCATGTGCCTGGCAGTGAAGCGGAAGTGTTTACCCGTGCTGCAGGAGTTTGGCTTCGTGTGGCCGGAGCTGCTGAACTGCAGCCTCTTCCCACCCACCAATGACCAGAACCACATGTGCATGGAGGGTCCGGCCGAAGACGACCTGTTCCACCCCAATAAGCCAGTGGCCCCGCACGAGGAGGAGTGTGTGACAATGGGTGGAGGAGGCCCAGAGCAATATGCCTGGGCCAAGAGGAGCGGCAGCTGTGTCCTGCAGTGTGGATACGAGTCTGGGCTGTACCGCCGGCAAGCCAAGATGTTCACGGACGTTTGGATGGCTGTGTGGGCAGTGCTGTGTTTCATCTCCACCTCTTTCACGGTGCTGACCTTCCTCCTGGACTCAGCACGCTTTTCCTACCCTGAACGCCCTATCATGTTCCTCAGCATGTGCTACAACGTCTACAGTGTGGCCTTCTTGGTGCGACTGACCGCCGGCCGGGAGCGGATATCCTGCGACCTAGACGAGGCGGCCGTGCCTGTTCTCGCGCAAGAGGGTCTCAAGAACACTGGCTGTGCTGTGGTCTTCCTCTTGGCTTATTTCTTCGGCATGGCCAGCTCTATCTGGTGGGTCATCCTCACGCTGACCTGGTTCCTTGCAGCAGGTCTCAAATGGGGCCATGAGGCCATAGAGATGCACAGTTCCTACTTCCACATTGCGGCCTGGGCGATCCCAGCAGTAAAGACCATAGTCATCCTAATCATGCGGCTGGTGGACGCAGATGACCTTACCGGGCTCTGCTACGTAGGAAACCAGAATCTGGATGCGCTGACTGGTTTTGTGGTAGCGCCGCTGTTCACATACCTGGTGATTGGGACGCTTTTTATCGCAGCAGGGTTGGTGGCACTCTTCAAAATACGCTCCAACCTGCAGAAGGACGGCACAAAGACGGACAAGCTGGAGCGTCTGATGGTCAAAATCGGAGTCTTCTCTGTCCTCTACACGGTGCCCGCCACCTGTGTCATTGCATGCTACTTCTACCAGATCTCCAACTGGGCTGATTTTCACCAGACAGCAAGAGACTCCTACATGGCGGCCGAAATGCTTAGGATTTTCATGTCGCTGCTCGTAGGCATCACCTGTGGCATGTGGGTGTGGTCTGCTAAGACCCTTCACACCTGGCAGCGCTGCTCGCTTCGCCTGCTGCACTCACGCAGGAGCTCCCGTGCCCACCAGAGCGGCGAGGGCTGGGCCAAACCTGGCAAGGGCAATGAGACTGTGGTGTGAAACACACATAAGATAGGGAGAGCTGGGAAAAGAGGGAAAATAGTGGCTCAGGCATGAAAAGAACGATGGCACCACCTTGTGGACATTTGTTGAAAGTGCACAACGTTGCCACCACCCcctttactctctctcagaACAGAACTGAGAACTCATGTAGCAGCATCAGCTCCTCAAACATAATGCAGAGACGTTTTAACTGATGATTATTACACTGGACACTTGCAACACAACAGAACCTCTCTAGCAGAACAGGTTCTGCTTCAACTGACCCAACTCTTTTTTCCTGTCGCTTCAACACTGTGGTAATGCAGCAAAGACACCTGGGAAATGTACTTGTTTTTAGTCCTCAGCGAATAGCACAGTTTACCTCGCACTGAGACACTGCAGTCTGTTCTTTCTTTCCTGTTTGCTCTGTTCTGTACCTCTGGAATGGCAGCTAGAACCCTGGTGGGTCAGGATTCTGGAACTATGCCCTGATTCGTGTTCTTGAACCACACCTGTTTTAGTGTAGTAGAGCCATGCCTCCGGTAGTACTGCCTTAGTTAGTACCCTTCTAAATACCTTGTTGTAGAGTCTTGCCTAATTTAGGGTTCTAGGACTCTGCATGTATTCTGCTTGGTTTCGAATTCTGCAGCCCTGCCTTGTGTGGGTTTCTAGAACTGCTTTGAACTGATGCAAAGCTGGTTTAGGATTCTAGAATCCTACTCACTTTAGGACTCTAGAAACCTGCTTGTGTTGACATTCAACAACCCTGCccctatttgttttttttagaactgtGACACATGTACCTCGCACCTGTTTGTTCTGAACCTCTGGACTCTGGTGAGTCAGGATTCTGGAACATTAGCCTGATTCGTGTTCTTGAAGCACAGCTGGTTTAGTGTTGTAGAGCCATGCCTCTAGTTGCATTGTAGGACACATGGTTACTGTTCTTGAATGTTGCCTTACTCTTATTCTTGTGGAATCGAGCCTGATGTAGggttttagaacatttattggtttaaatttttttgccCACTTGAGAAATTTCGAACTCTCCTTTATTTAGGATTAGAATTCTATAACCCTACCTTGTCTGAAATGATTGAAATCTGCCCTATGGCCTCATGCTGTTGTAGAAGCATGTCTTTAGTATTATTGTAGGACACTGCCTCAGATTTTAAGAACTCTGACAGTTTTATTGTTCTGAAACACCACATTATTCTAAATACTTTTTCTAATTATTGTAGAATCATGCCTGATTTAGGGATCTAGAACCCGGTTTGTGATTTTCTGTCCACTTTGGAAATGTCAAATCTTGGCCAATTAAAAATTCTAGAAACCTGCATGGCCGAAGATTCTAAAACTCTGACCCATTTTATTATCCTAGAGCTCTGTCTGTTTTattattcaaaaaatatatatgctttGGACTGATATATTCATGCATGATTCAGGATTTCAGGACCTCAGCTGGTTTGGGATTTTAGAATCCTGCTTGATTTAAGACTCTAGTATCTTACTTGTTTTCAGGTTCAGGTATTTAGTGTTCCAGAATCTTTCGCATTTTAGCATTCTACACTTTAGTGAGTTGTCTGGTTTAGTATTCTACAGTCCTATCACCCTTTGATATTCTAAAATGCTTACAATACTTCAGTCATTTAAACAcaactatttcattttctgaaaacCTAACTGGTTTAGGAGTCTggtatcctgttttttttttgtttttttttgaaaacTGCTTAGTTTAGGATTTTGCAACCCTACCTGGTTTGGGATTCGACAACAGCACCCCCTGCCTTTTTTAGTTTGGGTTTTCCAGAACTGCGAATCACTTAGTGTTCCAGAACCTTTCAGGTTTTCGTGTTCTACCTTAATTAGTATTCTAGTACCAGAATTTTGCAACCCTACCTGATTTGGGATTCTAGAACAGCTGCCTATGTCCCTTTTAGTTTTGGTTATCCAGAACTGTGCATTACTTAGTGTCCCAGAACCTTCTAcgattttgtgttttaccttAATTAGTATTCTAGAACCTAGTCACCCTTTGGTATTCTAAAAAGCTTACAATACTTGAGAGGTCTAAAACTATATATTGATTTTCCTAGAACCCTGACTGGATTGGGATTCTGGTATCTTGCATGGTGTCAATATGACTTCAGACTGATTGGTTTATGAATCTAGAATTCTACTTAATTTAGGACTCTAGAACCTTGCATGTTTTGCGGTTCAGGTATTTATTGTTCCAGAATCTTCCACATTCTAGCTTTCTACATTTTAGTGAGTTGTCTGATTTAGTATTCTAGAACATATTCACCCTGTGATATTCTAAAATTCTTACAATACGAAGGGTtctaaaattttacatttaatttcctAGAACCCTGGCTGGTTTAGGATTCTAGTATCCTGTTTAATTTAGTATTGGAGAACCCTGTCTTTTTTATCTTCCTAGAATCTAGCTTAGTTCAAGATTCTGCAGTCCTAATCATGTGGGAGTTTAGCACGCCCACATGAGAACAATTTAGGACTCTAAAACCCCACCCAtttaaaaattctgttttaGGACTCAAGAATCTTTCTTGGTTTAAGATTGTAAAACTTTACCAGTGTTAGACCTGAAAATTGGTTTGCAATCCAAAAATCCTAGAACAGAACTTAGTGTAGAATTGTATAACCTTTTGTCCTAGGCTCTTATAGTGTAGGATACTGTACTATATCTCAGTAGAGTAATCCTGAACCCTGTTAGTTTGAGGGTTCTAAAGGTTTCCAATGCATTTCACCACCAGGGACCTTCTCCAGACTCTATCATTCAACAATAGCTAATAGAAACACATGGGCAAAGGCTTACTTTGGCAAAGCTTTCCCAACAACAAGCTCTATAATACAGAGTTACATTCATTAAAAGAAGAccggtcccactttataataagtgtcttataataactgtgtagtttcACATCCACAGTGTAACTACcagtgaattacagttttacaggttatgtaattacttaTGTGTGTCAACGTCAATTGTCATTTGTGTGTAATATAGTCATAGTTTGTGTGTAGAATAAGTTGTGTATACATCTATATTTCTCCAACAGCTCTCGTGTGGCATGTAATTATGATTATTCAGATTATATTATGGGAAGATGGACAGAATATtctgtttgttgtgtgtaattacataacctgtataACTGCAATTAATCTGCATTAATGcatgattgttaatgtgtaactacacagatATTGAAGACacatattataaagtgggatCCAGAAGTCTTATGATGTTAACCACGTCTCTACTGAGCCTGAAGGCATCTGGGACAGACTGGCACACAGTGGAAACAGTGTATTGTGGTCAGATGAATTTTACCAGATCTTTTAGGAACAACTGAACAAATTAATGCACAGCTCTTTGTTCAAAAGACAAAAACTATGCAGTTTTTAGAATGCTCTTGCAGGTTCACCACCATGCCTTTTCTCCAGCCTTGTATTTAGACTGCAGTGGCCTTAACCCCtcaaattatttagttttgAGGGAGTAAAAGACCCAATCACAactaagcacacacacacacacacacactagcacaGATACATATGACAGACTTGTGTTTTTGCAAGACAATCGTTACCATGGTCAGCAATGGCCAGTGTAGGTCCAGAAGGTCAAGCAGATCTTCATGTTCTGGACCTGCATTTGCCACTATTTCCCATGGTGGAGTGAATGTAAACAGCGCTGAAGAATTCTATTTTtacaagctttttaaaaagtgccTCAGACACATAAACACGCTAGTGCTTTGAAGTACTCTGACGTTGATGAAGTACTTTTTGTAGATGAATTTGTACAGAagtgttgtttgtagttttatttttgttgtctttattgtattataaaatGCTAATTTATCTTTGTAAAAACAtcaacaaaatgtacaaaaaacgTGTTTGTTATTTAAGAATGCTTTTGTATCAAATGAAGAGAAATTAAACTTAGGTTTTCAACATA

Function

symbol description
fzd4 Predicted to enable Wnt-protein binding activity. Predicted to be involved in Wnt signaling pathway; negative regulation of canonical Wnt signaling pathway; and retina vasculature morphogenesis in camera-type eye. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in central nervous system; neural plate; and neurogenic placode. Human ortholog(s) of this gene implicated in exudative vitreoretinopathy 1. Orthologous to human FZD4 (frizzled class receptor 4).

NR:

description
PREDICTED: frizzled-4

GO: NA

KEGG:

id description
K02354 FZD4, fz4, CD344; frizzled 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605665.2 True 5752 mRNA 0.44 2 22200757 22210913

Neighbor

gene id symbol gene type direction distance location
LOC111192513 NA coding downstream 70280 22128934 ~ 22130477 (-)
parl parl,LOC107670111,LOC107689587 coding downstream 153779 22036488 ~ 22046978 (-)
stard10 stard10,LOC108278271,LOC106581404 coding downstream 382810 21776231 ~ 21817947 (-)
arap1 arap1 coding downstream 434167 21655023 ~ 21766590 (-)
pde2a pde2a coding downstream 585105 21282296 ~ 21615652 (-)
pdgfd pdgfd coding upstream 133126 22344039 ~ 22366316 (-)
msantd4 msantd4 coding upstream 290185 22501098 ~ 22506707 (-)
gucy1a2 gucy1a2,LOC107706059,LOC107669873 coding upstream 310751 22521664 ~ 22551935 (-)
cwf19l2 cwf19l2 coding upstream 343545 22554458 ~ 22574424 (-)
trnag-ucc_1 NA coding upstream 364564 22575477 ~ 22575548 (-)
G5414 NA non-coding downstream 6823 22193017 ~ 22193934 (-)
G5401 NA non-coding downstream 76507 22121889 ~ 22124250 (-)
G5400 NA non-coding downstream 80288 22118260 ~ 22120469 (-)
G5392 NA non-coding downstream 92541 22041654 ~ 22108216 (-)
G5393 NA non-coding downstream 95756 22100401 ~ 22105001 (-)
G5537 lamtor1,LOC106581407 non-coding upstream 262567 22473480 ~ 22603357 (-)
G5541 LOC107756230,LOC107756206,LOC107689577,LOC107670112,LOC107725765 non-coding upstream 281137 22492050 ~ 22496877 (-)
G5570 NA non-coding upstream 427145 22638058 ~ 22641835 (-)
G5568 NA non-coding upstream 437456 22648369 ~ 22649909 (-)
G5658 rab38,LOC103046565,LOC102778643 non-coding upstream 560866 22771779 ~ 22772067 (-)
G5396 NA other downstream 449 22131234 ~ 22200308 (-)
G5407 NA other downstream 42572 22155785 ~ 22158185 (-)
LOC111192507 NA other downstream 239292 21946786 ~ 21961465 (-)
inppl1 inppl1,inppl1a,LOC108261207 other downstream 259951 21916366 ~ 21940806 (-)
G5095 eif4g1 other downstream 1563689 20630225 ~ 20637068 (-)
G5565 NA other upstream 396856 22607769 ~ 22628182 (-)
G5667 c2cd3 other upstream 585432 22796345 ~ 22798290 (-)
LOC103028862 dynll2a,LOC107554284,LOC103397138 other upstream 1124153 23335066 ~ 23339735 (-)
srsf1 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234 other upstream 1133583 23344496 ~ 23351222 (-)
LOC103033507 fam222bb,LOC107661104 other upstream 1337811 23548724 ~ 23560500 (-)

Expression


Co-expression Network