LOC103027191 (LOC108425812,LOC108277490)


Basic Information

Item Value
gene id LOC103027191
gene name LOC108425812,LOC108277490
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15945728 ~ 15952683 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668904.1
GAGAGAAATGGAGAAGCTGGCAGTGGATGAAGCTCAAAAAGCCTTCAGTTCTGGGAGGTCGAGACCCTTACAGTACAGAAAACAGCAGCTCAGAGCTCTGCTCAGACTGATCACAGAGCACCAAGCAGACATCGCAGCAGCTCTCAAACAGGACCTTAACAGGAGTGAGTTTGATACACCACTTTTTGAGCTGATTGGACTGGAGCATGAAATCAAGGTGGCTGAAGAGCTCAGTGACTGGGCGAGTCCTCAGCCTGCAAGAAAGAGCCTGGTTACCATAAACGATGATGTTTACATTCAAGCTGAGCCTTTGGGTGTTGTGCTGATCATTGGAGCCTGGAACTATCCCTGGGCTCTGACATTACAGCCGCTTATAGGAGCCATAGCAGCAGGTAATGCTGCTGTGGTGAAGCCCTCTGAACTGAGCCAGAACTCGTCCAGTCTACTAAAACAACTGCTTCCTCATTATTTGGATAAGGAGATGTACCCTGTTGTGACTGGAGGAGTTCCAGAGACCCAGGAGCTTCTGAGGCAGCGCTTTGACCACATCTTCTATACGGGAAACAGCACAGTGGGCAAACTGATTATGGAAGCTGCTGCACGACATCTCACACCAGTGACTCTGGAGCTGGGAGGAAAAAGTCCCTGTTACATTGATAAGAACTGTGACATAGCAGTTGCTTGCCGtcgAATTACCTGGGGGAAATTTGCTAACTGTGGCCAGACGTGCATCGCACCAGACTACATTCTTTGTCATCCTAGTATCCAGAACAAAGTCATTGAGGAGTTACGGCTCACGTTACTGGAGTTTTATGGTGAGGAGCCCCAAACTTCTCCTGATTACGGCCGCATTATCAACCAGCGCCACTTTGAGCGAGTTTTGACCTTGATGGAGGGATGCACTGTGGCTGTTGGGGGAGGAAGTGATAAAACCCAGTGTTATATTGCACCTACTATTCTAAGGGATGTCTTGCCCCATGCCAGGATAATGCAAGAGGAGATCTTTGGACCTGTGCTACCGATAATAAGTATCAGTGATGTCAGTGAAGCTATTCACTTTATCAACGAGAGGGAGAAACCACTGgctctttatgttttttcttctgaTAAGAAGGTGATTAAGCGAATGCTGAACGAGACAACGAGTGGAGGGGTCGTGGTTAATGATGTCATGATGCATTATACAGTCACCTCGTTGCCTTTTGGGGGTGTAGGGAACAGTGGAATGGGCAGATATCATGGAAAGCACACCTTTGACCAGTTAAGTCACCACCGTGCTTGTCTTATCAAGTCATTGGCGATGGAAAGTCTAAATAAAGCCCGCTACCCTCCCCTGACTCCGTCCCGCCTGCGTAGGGCCAAGTTCTTCATGACGAGCCGCTTGTGCACCTGCGCCCAGGCTACCTGTGCCTGGGCCGTCATCGCTACCATGCTTGCACTGGGTCTCCTGATTGCCTTACTGATAGTTCTTCTCAAGGATCCGGTGGCCTGAAGATGCGCTAATCTTTCCTGTCTGAAGAACACaacgaatatatatatatatatatatattatatatatatataatatatatat

Function

NR:

description
PREDICTED: aldehyde dehydrogenase, dimeric NADP-preferring-like isoform X2

GO: NA

KEGG:

id description
K00128 ALDH; aldehyde dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668904.1 True 1575 mRNA 0.48 11 15945728 15952683

Neighbor

gene id symbol gene type direction distance location
LOC103026903 aldh3a2a,LOC108425811,LOC107586255,LOC107729125,LOC107662794,LOC108277491 coding upstream 5336 15934508 ~ 15940392 (+)
LOC103027482 NA coding upstream 52898 15890205 ~ 15892830 (+)
LOC111192347 NA coding upstream 170776 15731479 ~ 15774952 (+)
LOC103028185 NA coding upstream 183667 15733287 ~ 15762061 (+)
LOC103029544 NA coding upstream 216417 15709480 ~ 15729311 (+)
LOC103025893 tpst1,LOC108425813,LOC108277496,LOC107662793,LOC107657564 coding downstream 54982 16007665 ~ 16069129 (+)
timm50 timm50,LOC107586258,LOC107729126,LOC107728222,LOC107662791 coding downstream 207075 16159758 ~ 16192568 (+)
dll3 NA coding downstream 253214 16205897 ~ 16211505 (+)
LOC103022345 chp2,LOC108425820,LOC108277499,LOC107657559,LOC107586310,LOC106580765 coding downstream 318479 16271162 ~ 16276833 (+)
LOC103022964 LOC103022964 coding downstream 328286 16280969 ~ 16292120 (+)
G3917 NA non-coding upstream 57361 15886114 ~ 15888367 (+)
G3894 NA non-coding upstream 173224 15763244 ~ 15772504 (+)
LOC111192856 NA non-coding upstream 281380 15660210 ~ 15664348 (+)
LOC111192011 NA non-coding upstream 290407 15639346 ~ 15655321 (+)
G3808 NA non-coding upstream 326557 15617118 ~ 15619171 (+)
G4120 NA non-coding downstream 203829 16156512 ~ 16157533 (+)
G4158 supt5h,LOC107586261 non-coding downstream 340828 16293511 ~ 16310645 (+)
G4164 NA non-coding downstream 359258 16311941 ~ 16312669 (+)
G4167 NA non-coding downstream 361429 16314112 ~ 16314937 (+)
LOC111192356 NA non-coding downstream 396924 16349607 ~ 16350551 (+)
LOC103040601 NA other upstream 119625 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 782772 15072840 ~ 15162956 (+)
G3790 NA other upstream 906814 15038555 ~ 15038914 (+)
G3736 NA other upstream 982145 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 1100102 14840293 ~ 14845626 (+)
G4221 NA other downstream 590259 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 666363 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 2057495 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 2088606 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 2119281 18071964 ~ 18073663 (+)

Expression


Co-expression Network