LOC111192370


Basic Information

Item Value
gene id LOC111192370
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18017759 ~ 18022389 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669104.1
tagcaatgatcaCTGCAACGCAATGGTGTACTTACACAGGgtgtaatatatacatataaaataatactgcgaaaaataaatgatactattcactatatattattgcatatattgGATATTACTGTAAAGATTGATTTATTAACcaaatttttataaatttatacaAAATTTATACATTTGTAATGTCTGATAGCTGCAAAAATGTTTGGGTTTCTGATTTATGCGTGCATGTATCATACTGTATCATACTATATATTCAAATGCTCTCTCAAATACGTCCAAACTGATTAAAAATGCTTTGGCAGGATTTCAAACCGGTAAGGAATATGTGACATTCAGGGACTTGGACGTCATCCTGACATGTCCAGAACCGACAGAATCGACAGAACCGACAGAATCGACAGCATTTACATGGGGACCCAAAAATGATCTAGGTAACGAAAGAGAAGCGATCATAGAGGATTATACAGAAGATGAAAGCTTGTTCTACTGCCAGAAAAATGCTGTTAAACATTTCTTCTATGTCAAAGCGAAAGTGTGTAAAGGCTGTGTGGAGATGAACAAAGGTCTGGTGATTGCAGCCATGTTCGGGGACATTTTGTTCACGCTTGGGGTCATCCTTGTAATCTACGCATGTGCTAAGAAGAAGAACTCATCTCCAGCTCCTCAGAGAGCTGCACACTCACGCCAGCCAAGTGCCCCTCCTCCTCCTGAACCTGATTATCAGAGTCTGAACCAGGCCACGCGCAGCCGAGACATCTACGCAGAGGCGGGCAGACGGGCACACTGAAGACCAGCTGGATACAGCAGGCttttttcagtttcagattACAACTTTTacagcaagttttttttttttttttttttttaatttggcatcATATTGACGTGTTAAAAACTGGATTACATTCTGTACCAGCTTTTAACTTCCTCAGTCTCCTCCCAAATATATACGTGATCAGTCAGGATGTGTTTGAAGttagctattttaattttagagcTTGAACtgcgaggctaatgtagctaacaattAAACTGCATTGCTAAAAACAatgatagtaaaaaaaaacttagggaataaaccaatcagtgcatTTGAtgataaactacatttaagGTAAACTGAGGTgttgtgaaacatgataatgagtagaaacatttgttgaatagccccagcattcccaaataAAGCGCTTTTAGCCGaagctcccaacaggcttacaatgctagtgataggggcatattgTTGCCTATGCAAAGAAATGACTGTTTTTCTGTAGAAATGCCTGAATATTATGGAGATATTTTCAGTAACaactggaattcatgcatttccacagaatttattttgctattaaGTTTTTTGCTTGTAAGTTGACTTAATTTTAGGATGGTAGCGCTAAAAAACTGTCTGAAGGTACTGTTAGTATAAAACAGTATattcaaagtgtttttaataaactatctgtgcactttcaacGTTTTCAGTGCCTTGTTTGAAATGTGAGTATGCTCTGACTTCTACCAATGAAGTATGGAGCTACTTTCAGCTTgataaaggtgtaaaaatagccatcTCTTTGCATGGGAACTCTATGCCCCAATCActtgcattgtaagcctgttgggagcatcggctaaaagtgctgtatttcagaatgctggaggTGAATGGAGATGGGCTATTGGACAAAAGTtcgtactcattatcatgtttcactacaacccaagtccatttcacaccagatttctcctttaatgaaGTTCAGGATATAATGGCTTGTGTAATATGtgaatatacaaaaatatacttaatgttGTCATATGCTTTGCCTTAAACTTTCATAAATAGCTTCATGACAATGCAaatattcttttctttcttaatGTTTTCATCTATGTTTATGTTTCAGAGTAATATAGAAGTATTGAGCTTTATTGTAAAGGTAAAACATGCACtgatagaaatataaatatgttttatgtttttattgtcattttttcacaataaacatGT

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669104.1 True 2017 mRNA 0.36 4 18017759 18022389

Neighbor

gene id symbol gene type direction distance location
lsamp lsamp coding upstream 143943 17454350 ~ 17873816 (+)
LOC111192859 sae1,LOC107718284 coding upstream 1326000 16689234 ~ 16691759 (+)
LOC103044410 klc3,LOC108425834,LOC107601696,LOC107743695 coding upstream 1373939 16633323 ~ 16643820 (+)
mark4 mark4,si:dkey-31m14.7,LOC107585548 coding upstream 1399829 16561486 ~ 16617930 (+)
LOC107197545 NA coding upstream 1475316 16538471 ~ 16542443 (+)
LOC103030597 LOC108412477 coding downstream 102305 18124694 ~ 18131953 (+)
sidt2 sidt2 coding downstream 115635 18138024 ~ 18166677 (+)
LOC103032687 gmfg,LOC103032687,LOC108277844,LOC107757325,LOC107679065,LOC107090391 coding downstream 228534 18250923 ~ 18256343 (+)
LOC103033229 psa6,LOC103033229,LOC106612618,LOC105026880,LOC106580837 coding downstream 252436 18274825 ~ 18281029 (+)
LOC103036794 map4k1,LOC108443018,LOC107757316,LOC107679433,LOC101883459,LOC104956018 coding downstream 309950 18332339 ~ 18386319 (+)
G4460 NA non-coding upstream 8412 17929724 ~ 18009347 (+)
G4467 NA non-coding upstream 32570 17958512 ~ 17985189 (+)
LOC111192366 NA non-coding upstream 74597 17890228 ~ 17943162 (+)
G4456 NA non-coding upstream 96754 17882588 ~ 17921005 (+)
G4451 NA non-coding upstream 166316 17847764 ~ 17851443 (+)
G4531 NA non-coding downstream 12122 18034511 ~ 18038744 (+)
G4549 NA non-coding downstream 41045 18063434 ~ 18065761 (+)
G4563 NA non-coding downstream 155219 18177608 ~ 18178083 (+)
G4542 NA non-coding downstream 189767 18212156 ~ 18280613 (+)
G4582 paf1 non-coding downstream 236182 18258571 ~ 18306252 (+)
LOC103039709 NA other upstream 5656 18010178 ~ 18012103 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other upstream 1394690 16619046 ~ 16623069 (+)
G4221 NA other upstream 1471905 16542942 ~ 16545854 (+)
LOC103040601 NA other upstream 2191656 15781638 ~ 15826103 (+)
LOC103023550 nf1 other upstream 2854803 15072840 ~ 15162956 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 18900 18041289 ~ 18422356 (+)
G4550 sik3 other downstream 49575 18071964 ~ 18073663 (+)
G4612 NA other downstream 736986 18759375 ~ 18759858 (+)
G4775 LOC108411134 other downstream 1138342 19160731 ~ 19165631 (+)
LOC107197594 NA other downstream 2526802 20549191 ~ 20551635 (+)

Expression


Co-expression Network