LOC111192490 (LOC108277610)


Basic Information

Item Value
gene id LOC111192490
gene name LOC108277610
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 20671727 ~ 20689357 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669476.1
AGAGCAGGACTGGTGAATGGAAGaagaaaggatttttttttttgttagtggCAAGACCTGGAGAGAAGTGCCATCTCTTTGCTGTTGGACATCATGGTCTCAATGAAGGTGTCCATCCTGTGCTTCCTACTGACCACTGGGTTTGCTCTTGTCACTCTGGCCTCTGCTCCAGTTGAAGAGGAGAATCCAGAGTTTTGGAGGGCCCAGGCTCAGACTACACTGAAAACGTCTCTGAGCAGGAAGCTCAACACTAATGTGGCCAAAAACGTCATGCTGTTTCTGGGAGATGGGATGggcatcaccaccatcacagcTGCCCGTATCCTGAAAGGCCAGCTGCAGAATCAGTTGGGGGAGGAAACAGTCATGACCATGGATACGTTCCCTCATGTGGGCCTTGTTAAGgtatatacagtagattttcAGATTCCAGACAGTGCTGCCACAGCAACAGCGTACCTGTGTGGTGTGAAGACCAACCTGAACGTGGTGGGTATGAGCGCAGCTGCGAAAAATGGAGTGTGTCGCACAGAGAAGGGCAATGAGGTCACATCTATTCTGCAGTGGGCTAAAGAtgcagGAAAGTCAGTGGGTATAGTGACCACCACGCGTGTCCAGCATGCGACCCCGGCAGGTGCGTACGCTCACAGCTGCAGCAGGAAGTGGTACAGTGATGCTGATATGCCAGCTGCAGCTAAACGAGACGGCTGCAGGGACATCGCCGCCCAGCTCATCAACAACACTGATATTGATGTGATTATTGGTGGAGGACGGAAGTACATGACCCCCAAAGGTACAGCCGACCCCGAGTATCCCGCGGATGCGAGCGCTAATGGCAACAGACAAGATCAACGCAACCTGATAGAGGAGTGGATCAGCCAGAAGAAAGGAAAGGTGGCTCATTACGTGTGGAATAAGGATGACTTTGACAGAGTGGACCCAGAGAATACAGACTACCTGATGGCCCTCTTTGAACCTGTCGATATGAGGTTTGAGGTGGAGAGAGACCCACTCATGGATCCGTCCATCATCGAGACCACCGAGAAAGCCATCCGCATCCTGCAGAAGAACCCTAAAGGCTTCTTTCTACTGGTGGAGGGCGGGCGTATTGATCAGGGTCACCATGCCAGTCGAGCCTCCATGGCGCTGCACGAAGCCGTTGCCCTTGACAACGCGGTCGCCCGGGCTCTGGAAATGACCAAGGAGGATGAGACGCTGACTGTTGTCACCGCTGACCACTCCCACTCGCTGTCATTTAACGGGTATCCTTTCAGAGGGAACAGCATTCTGGGTAAATCTCCTCTCTTCGGATTGGACATGCTTCCATACACCACTCTGATGTATGGGAACGGCCCTGGACACAAAATCACCAACAACAAGCGACCCGACATCCGCAATGTGGACACCAAAAGTAAGGACTACGTCCAGCAGGCGGCTGTCCCCCTGGACTCGGAGACACATGGTGGGGAGGACGTGGCGGTTTTGGCCCGGGGCCCGATGGCGCATCTTTTCCAGGGCGTGAATGAGCAGAGTTACTTGGCTCATGCCATGGCCTACGCTGCATGCATGGGGGACAACCAGCAGCACTGCGCTtccaccaccacccccaccaATAACAACGCTGCCAGGGCACGAAGCTCCGCCCCTATCTCCCCTTTCATCTCTGCACTTCCGGTGCTGCTAGGGGCATTACTGAGTTTGCTTCTGTACTGAGAGAAAGACTGAATGGTTAATTTCTGCATTCTGAtttttattatctcttgttttaTAGTGATTTCTGGTTAGTAGTTGACCTTGACTAAATTACGAtcaatgtaaatgttaataaattccATAAATAAA

Function

NR:

description
PREDICTED: alkaline phosphatase, tissue-nonspecific isozyme-like

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004035 alkaline phosphatase activity molecular_function

KEGG:

id description
K01077 E3.1.3.1, phoA, phoB; alkaline phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669476.1 True 1842 mRNA 0.52 11 20671727 20689357

Neighbor

gene id symbol gene type direction distance location
eif4g1 LOC108280304,LOC103370583 coding upstream 33779 20585146 ~ 20637948 (+)
LOC111192969 NA coding upstream 96300 20571402 ~ 20575427 (+)
LOC111192413 NA coding upstream 114069 20555459 ~ 20557658 (+)
LOC103036360 NA coding upstream 123296 20545540 ~ 20548431 (+)
LOC107197593 NA coding upstream 126323 20537720 ~ 20545404 (+)
fam131a fam131a,LOC102799247 coding downstream 11345 20700702 ~ 20724574 (+)
LOC103033175 NA coding downstream 42928 20732285 ~ 20740993 (+)
LOC103030875 LOC108413394,LOC108278199 coding downstream 318764 21008121 ~ 21086736 (+)
LOC103042479 ecel1 coding downstream 500384 21189741 ~ 21245822 (+)
LOC103042160 LOC108412514 coding downstream 559496 21248853 ~ 21261198 (+)
G4951 NA non-coding upstream 185562 20485825 ~ 20486165 (+)
G4949 NA non-coding upstream 217234 20452126 ~ 20454493 (+)
G4940 NA non-coding upstream 286472 20384764 ~ 20385255 (+)
LOC111192871 NA non-coding upstream 291432 20379244 ~ 20380295 (+)
G4932 NA non-coding upstream 366802 20304689 ~ 20304925 (+)
G4994 NA non-coding downstream 14403 20703760 ~ 20704500 (+)
G5003 NA non-coding downstream 67818 20757175 ~ 20762971 (+)
G5012 NA non-coding downstream 193454 20882811 ~ 20883093 (+)
G5028 NA non-coding downstream 292886 20982243 ~ 20982748 (+)
G5036 NA non-coding downstream 398617 21087974 ~ 21160121 (+)
LOC103037169 NA other upstream 88853 20558523 ~ 20582874 (+)
LOC107197594 NA other upstream 120092 20549191 ~ 20551635 (+)
G4775 LOC108411134 other upstream 1506096 19160731 ~ 19165631 (+)
G4612 NA other upstream 1911869 18759375 ~ 18759858 (+)
G4550 sik3 other upstream 2598064 18071964 ~ 18073663 (+)
G5026 NA other downstream 294350 20983707 ~ 20999200 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 1367165 22056522 ~ 22154926 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other downstream 1718199 22407556 ~ 22524746 (+)
LOC103041654 chordc1,LOC108412466 other downstream 1953253 22642610 ~ 22673984 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other downstream 2019555 22708912 ~ 22758213 (+)

Expression


Co-expression Network