cwf19l2 (cwf19l2)


Basic Information

Item Value
gene id cwf19l2
gene name cwf19l2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22554458 ~ 22574424 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669783.1
CGATCGCTCCCTTGAACACTCCGCCATTTCCCTCGTGCGGAAAATTTCCGCACTTTGTTTGGCTGAGACCTGTTCATGAGgcttctgggtattgtagtagCCACTATAGGTACCTGAGTCGTGTGCTGTTTATATCAACGcagaattttaaatatatagagaaTTATTTATGGAAATATAGATAATTATTGATACATATTGGCACTTTAGAGTTTCCGAATCTTATATTAGAGTGTAAACGTGTCGGCAGCGCcgctaaaaaagaaaataaaacataacgGTCCACGTGAGGACTACAGCGAGCAGAACATTACGACATCTCAAACCGCTTTACGACTGTTTTCGTCGGCGTGATGGCGACGTACGGAGGACGATTTGAAAGCAAGACGAACATCGAGGAGAGAAAATCAGAaaagaggaaacagagagagaatgttCTCCACCAGGCAAAGAAGAAGTATGAAGATGAGGAGCGGAGGGAGGCAGAGAGGAAGGCCCGAGGTGAACACACCTGGATGCTGCCAGAAATTGACCAGCGTCTGCAGGAGATGGGCCagGAACATtctctgaagaagaagaaaaaggagaaatccaaaaagaagaagaaggaaaagaaaaagaaaatgaagaaagaaaaaagcaaacagCAGGAGGAGGACGGCTCGTCCGACAACTCGGCGGACTCTGATGAATGGGTGGAAGCTGTGCCACAGTCAGGGGGCGTGGAAAAAGCTTGGAAGGTTGCAGAACAGGCCACACCCACTGCCAGTTCAACCAGTAATGACCAAAGAGATGAGTGGATGACATTTGACTTTTTGGCCATGAAGACGACATCTGTTGCCGAGCGACGAGCACAAAAGGAGGCAGAGAAAGAGGCGGAGCGAGAGAAAGAACGCTCCATcgaacagGCCGGTCTCCACAGGCTGGAACTGAACCCTTACTGGAAAGATGGAGGGAGTGGACTGCCTCCAGAGGAGACTGCTGGTACTGTGGTTAAAAAAGtgGTGGGGGTGGCCGATGGGGGGTTGAGCTGGTTGAGGAAGTCGTATCAGAGGATGAAGGAGCAGGCGGAGAGAGAGCAGCGCAGGCTGGATGATGTGGTGGCAGAGAGATATGGGtcaaTGGAGGCCTTCCAGAAGAGACTCCAAGAAGCAGAAGAGGCTGCCTTCCCTCAGAGGAagagggagcgagactatgggagagagagggagcgagactatgggagagagagggagcgagactatgggagagagagggagcgagactatggcagagagagggagcgagagagagagcagggcagAGATAgggagcgagacagagagagagatagagactgCGATAGAGAGCGGTATGTAGAGAGAAACAGGGACCAAGAAAGAGACAGGGataaagaaaaaggaagagagcgggatggagagagagatagcaagCAGCCGAAGgagttctctctctcctccctcaaAGGACGCTTCCTCAAACCCTCTGACAGTGATGACCTCATGACCCCAGGGGAGGGCAGGAGGAAACCGGGCATGACTGCCACTGCCTCTTCGTCCAATAAGAAAGCACCAGCCTTCCTGAAACCCagagatgaggatgatgatgaggatgttCCAGCATGGAGGAAGAGCAGTGGGGCGAGAGACTCAAAGGAgaagcaggagagagagggagtgagggaggagACGCAACAGCCTGAAAAAATACAGCAGCCGACTGGCGCCGCCCTGGTGGAGGAAAGCAGTTCTGAGAGTGAAGAAGATGATGCTGAACAAGAAGTTCAGATGCCGCTTCTTACAGATGAGGAGATGAACAAACTTGGAGCCAAACTGGTCAAAGCTGAGCTGCTGGGGAACACGgctctGATGGCTTCTCTGAAGGCTCAGCTGGAAGCTGCGCGGAAAGCGAGAGAGAATCAGGCACAGAAGCCCACTGCTCGCCCACCCACtcagGTAACACAGGGGGAAGCGGAGGCAGAGCAGGACCTGGTTTTGTTCAGAACAGACCACTCAGGAAGAGCCTGGCCTGTAAGTGGACCCTCCCAGCATGTGGAACCGAAAGGAGGGAGGCGGAAAAAAAAAGCGatCGAGACGCATGTTGCTGGCGAGCGTGTGCGGTACTTTGATGATGATGACGGTATGGATTTGAGGGAGATGGTGCGGCGAGAGAAGATGAGTACAGCAGAAGATCAAAACGCTCTCTACTCACGCATGGCAGCTAAGaTGATGGGGAAGCAGGATGGTGACAACTACACACTGGACGACATGTTTGTGTCAAGTGCTGCTCAGAAGGAGCGGGCAGGGCTGGATGAAGATCGTCAGCGCAGCAGGGCGAAGGAGGAGGCGCGCAGACTTGCTGGACGTCTGGAGAAATGCCCCTACTGCTTCACCAGCCCGGAGCTGCCTAAACACCTCATCATCGCTATAGGATCGAAGGTGTATCTGAGTATGCcgaactgtgtgtctctgacAGAGGGTCACTGTGTGATCGCCCCACTGCAGCACCACTGCTGCTCTACTGGGCTGGACGAGGATGTGTGGAGCGAAATGCagGTGTTCCGCCGGGCACTAGTGCGAGTGTTCGAGGCTCAGGATCTGGACTGTGTGTTTTTAGAGACGCACATGAATCCAAAAAGGCGCCTGCACCTGCTGTACGAGTGTGTTCCACTGCCACGAGAACTGGGAGACATGGCACCTGTTTATTTTAAGaaaGCTCTATTGGAAGCTGATGAGGAGTGGGCGATGAATAAGAAAGTGGTGGACTTGTCCTCCAAAAACATCAGACAGTCTgTTCCTCGTGGTTTGCCATATTTCTCAGTAGATTTTGGTCTGCAGGGAGGATTCGCCCACGTCATTGAGAATGAGCAGAAGTTTCCTCACTACTTTGGGAAGGAGATTCTGGGTGGAATGTTGGACCTGGAGCCTCGGCGCTGGAGAAAACCAATCCGAGAGAACTTTGATGATCAGAGGAAGAAGGTCCTGGAGTTCTCTCAGTGGTGGAAACCATTTGACTGCACCAAGACTGACAACTAGATGCTTCCCACCAACTGTGCTTGGTTCAGTTAAAGTTAAATCACACCATTACTCTCGAGTTATATTGTTTTACAGAGATCCTCCTGTTGCCATGTGCTGATGTAATGtgataaaatgattttataattAAAGTGTTCTTATAGCTCCTAAA

Function

symbol description
cwf19l2 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of post-mRNA release spliceosomal complex. Orthologous to human CWF19L2 (CWF19 like cell cycle control factor 2).

NR:

description
CWF19-like protein 2

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K24940 CWF19L2; CWF19-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669783.1 True 3186 mRNA 0.51 19 22554458 22574424

Neighbor

gene id symbol gene type direction distance location
gucy1a2 gucy1a2,LOC107706059,LOC107669873 coding downstream 2523 22521664 ~ 22551935 (-)
msantd4 msantd4 coding downstream 47751 22501098 ~ 22506707 (-)
pdgfd pdgfd coding downstream 188142 22344039 ~ 22366316 (-)
fzd4 fzd4,LOC107600811,LOC107551868 coding downstream 343545 22200757 ~ 22210913 (-)
LOC111192513 NA coding downstream 423981 22128934 ~ 22130477 (-)
trnag-ucc_1 NA coding upstream 1053 22575477 ~ 22575548 (-)
trnag-ucc_2 NA coding upstream 1651 22576075 ~ 22576146 (-)
trnag-ucc_3 NA coding upstream 11713 22586137 ~ 22586208 (-)
folh1b folh1b,LOC107737433,LOC107670141,LOC107560856,LOC108412465,LOC107558820 coding upstream 77233 22651657 ~ 22666502 (-)
LOC103040843 tyr coding upstream 118431 22692855 ~ 22699250 (-)
G5541 LOC107756230,LOC107756206,LOC107689577,LOC107670112,LOC107725765 non-coding downstream 57581 22492050 ~ 22496877 (-)
G5414 NA non-coding downstream 360524 22193017 ~ 22193934 (-)
G5401 NA non-coding downstream 430208 22121889 ~ 22124250 (-)
G5400 NA non-coding downstream 433989 22118260 ~ 22120469 (-)
G5393 NA non-coding downstream 449457 22100401 ~ 22105001 (-)
G5570 NA non-coding upstream 63634 22638058 ~ 22641835 (-)
G5568 NA non-coding upstream 73945 22648369 ~ 22649909 (-)
G5658 rab38,LOC103046565,LOC102778643 non-coding upstream 197355 22771779 ~ 22772067 (-)
G5682 NA non-coding upstream 295469 22869893 ~ 22871089 (-)
G5687 NA non-coding upstream 312566 22886990 ~ 22892910 (-)
G5396 NA other downstream 354150 22131234 ~ 22200308 (-)
G5407 NA other downstream 396273 22155785 ~ 22158185 (-)
LOC111192507 NA other downstream 592993 21946786 ~ 21961465 (-)
inppl1 inppl1,inppl1a,LOC108261207 other downstream 613652 21916366 ~ 21940806 (-)
G5095 eif4g1 other downstream 1917390 20630225 ~ 20637068 (-)
G5565 NA other upstream 33345 22607769 ~ 22628182 (-)
G5667 c2cd3 other upstream 221921 22796345 ~ 22798290 (-)
LOC103028862 dynll2a,LOC107554284,LOC103397138 other upstream 760642 23335066 ~ 23339735 (-)
srsf1 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234 other upstream 770072 23344496 ~ 23351222 (-)
LOC103033507 fam222bb,LOC107661104 other upstream 974300 23548724 ~ 23560500 (-)

Expression


Co-expression Network