LOC103042688 (LOC107694033,LOC107592755,LOC107752375,LOC105911027)


Basic Information

Item Value
gene id LOC103042688
gene name LOC107694033,LOC107592755,LOC107752375,LOC105911027
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22904775 ~ 22909631 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669898.1
GAGCGCGCTCATGGCCGGCAGGAGGCACGTGATCAGGAGTAGGCACTCAGTGATTTTGTTAATGTTCTGCAGCTCGGAGCTCTTCTCCACTGTTTCTGAGCGTTCTGGAGGAGTTTGGTGAAGGAGTTTTGTGGAGGTGTTTTGTGGAGGTGTGTGAGGGAGTTCGTGTGATGGAGCGCTGGAAGGGCAGGGTAGCTCTGGTCTCTGGAGCCTCGGTGGGGATCGGAGCTGCTGTAGTGAAGGAGCTCGTTCAGCATGGTATGAAGGTGGTGGGCTGCGCCAGGAGCGTGGACAAGATAGAGAAACTGGCAGCAGAATGCGCTCGATCCGGATTCAGCGGAACTCTGATTCCATACAAGTGTGATCTGTCTGTGGAGGAGGAGATTATAAACATGTTctctgcaatcaaatcctcacaccaGGGCGTCGATGTGTTAATCAATAATGCTGGATTAGCTCTACCAGAACCCTTACTGACTGGAAGAACCAGCAGCTGGAGAACCATGATTGATgtGAACGTAATAGCGCTGTCGATCTGCACTCGTGAAGCATATCAGTccatgaaagagagaaatgtgGATGATGGACACATCATTAACATAAACAGCATGAGTGGACACCGGGTGGTGCAAAGTGCTGATGTACACTTCTACAGTTCCACCAAGTACGCTGTGACCGCTCTCACTGAGGGCCTCCGACAGGAACTGAGGGACACCAAGAGCCACATACGTGCTACATGTATTTCTCCTGGTCTAGTGGAAACAGAATTCGCTTATCGGCTCTACAGTGAAAACCCAGAGAAAGCTGCAGCTACTTACGGAAGTATAaagtgTCTTCAGGCTGGTGATGTTGCCAGTGCTGTGGTTTATGCTCTGAGTTCTCCTCCACACGTTCAGaTTGGAGATATACAGATGAGGGCTGTGGAACAGGTGTCTTAATGAACAGAGAGACTCTGTGTATTAAACAGTGTCTAAACTACCAGATGACTGAAAGACTGAAGATCTGAACCTGGAACTATTGAAGAACTCTAGCAGTGGTGAACTTtgagtgaaaaaataaaacaggacaCCTACTGTGAAACATTGGGCTGTTGATTTTTAAGGGGGTGTGGCTAAAACTGAAGATATAAAACTTTACACCAGACCTTCTGctgcctctccactcttcctccagactctgaagctcgatttccaaatgaaatgcaaaaggTTTTCATTAGCTGCAATCCATTATaatcaacagtaaaataaataaacactcgaaatagat

Function

NR:

description
PREDICTED: dehydrogenase/reductase SDR family member 11-like isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669898.1 True 1269 mRNA 0.47 7 22904775 22909631

Neighbor

gene id symbol gene type direction distance location
LOC103042381 LOC107694033 coding upstream 958 22896314 ~ 22903817 (+)
LOC103022249 NA coding upstream 11676 22880837 ~ 22893099 (+)
LOC103021718 LOC108410847,LOC107758659,LOC107582611,LOC107592752,LOC107752380 coding upstream 37725 22862378 ~ 22867050 (+)
LOC103047689 NA coding upstream 66348 22835801 ~ 22838427 (+)
LOC103047173 LOC108410854,LOC107582651 coding upstream 74697 22812700 ~ 22830078 (+)
LOC103043000 LOC107694033,LOC107592755,LOC107752375,LOC105911027 coding downstream 1320 22910951 ~ 22917840 (+)
LOC103021948 LOC107694033 coding downstream 1394 22911025 ~ 22925516 (+)
LOC103023064 zgc:174895,LOC103023064,LOC107672400,LOC107657114,LOC107752376,LOC105911024,LOC108278204,LOC106612798,LOC108443501 coding downstream 31098 22940729 ~ 22946604 (+)
nek8 nek8,LOC107672375,LOC107758702,LOC107592757,LOC107661116 coding downstream 65889 22975520 ~ 22998282 (+)
traf4 traf4,traf4a,LOC108443497,LOC107758738,LOC107727926 coding downstream 92220 23001851 ~ 23064522 (+)
G5619 NA non-coding upstream 80709 22822871 ~ 22824066 (+)
G5595 NA non-coding upstream 197006 22707113 ~ 22707769 (+)
G5455 NA non-coding upstream 558993 22344076 ~ 22345782 (+)
G5416 NA non-coding upstream 689724 22214411 ~ 22215051 (+)
G5382 NA non-coding upstream 710892 22192933 ~ 22193883 (+)
G5640 rab34a,LOC103022556,LOC108443499,LOC107758713,LOC107672399,LOC107657101 non-coding downstream 40196 22949827 ~ 22951675 (+)
G5642 LOC108443500 non-coding downstream 46429 22956060 ~ 22958499 (+)
LOC111192542 NA non-coding downstream 58360 22967991 ~ 22974947 (+)
G5657 NA non-coding downstream 116511 23026142 ~ 23026556 (+)
G5736 NA non-coding downstream 167526 23077157 ~ 23077356 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other upstream 146562 22708912 ~ 22758213 (+)
LOC103041654 chordc1,LOC108412466 other upstream 230791 22642610 ~ 22673984 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other upstream 380029 22407556 ~ 22524746 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other upstream 749849 22056522 ~ 22154926 (+)
G5026 NA other upstream 1905575 20983707 ~ 20999200 (+)
G5646 NA other downstream 54429 22964060 ~ 22964924 (+)
LOC103024639 NA other downstream 171760 23081391 ~ 23156366 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other downstream 402881 23312512 ~ 23351306 (+)
G5871 NA other downstream 922605 23832236 ~ 23833830 (+)
LOC103035426 NA other downstream 930362 23839993 ~ 23847367 (+)

Expression


Co-expression Network