tada2a (tada2a,LOC107661114,LOC107755391)


Basic Information

Item Value
gene id tada2a
gene name tada2a,LOC107661114,LOC107755391
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23158514 ~ 23177559 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669983.1
GCCGCAAGGGGCGCTGCGCTCCACCTCATCTTTACCTCAGGATGGCTGTTTTCTCCTTAGCCaagtagctaactaactaacaaactaGCTGCGCTGATAACCGCTGTATGAGCATCTGGTGCGGGACAGCGAggcttaaattaaattgttataaATGGTGTAAATCGCCACTGGTTTGTGAGTTTGTGGAGTTTGAGTTAGTAGTAACTGCTGGGGAAATGCTGAAGCAGCTCAGCCcggctagcttagcttagcctgttagctaactagcttagcttaaAAACAACAGGCTTGAAAACAAGCTAGCggctttaattaaataataacgACAGAAAACGTTAAATAAATCATCCTGTACACGATTTACTGCAGACATGGACCGCCTGACATCTTTTGGAAATGACCCTTTTGACAAGCCTCCTTGTCGGGGATGTTCTTCGTACTTGGTGGAGCCTTACATAAAGTGTGCTGAGTGTGGACCATCCCCTTTCCTTCTCTGTCTCCAGtgttttactCGGGGCTATGAGTATAAGAAGCATCAAAGTGATCACAAATTTGAAATCATGACGTCGGATTTTCCTATACTGGAGCCCAGCTGGACGGCGCAGGAGGAGATGGCTCTCCTAGAGGCTGTCATGGACTGCGGCTTTGGAAATTGGCAGGATGTGGCCTATCAGATGCGCACCAAAACCAAGGAGGAATGTGAAAACCACTACATGAAGAACTTCATCAACAACCCTCTCTTCTCCTCCACACTGCTCAGTCTCCGGCAGATGGAGGAGGCTCGAACAGCGGACAGTGCCATCCCATTCAAACCCACTGACGATCCTCCTCGGCCCTCGTTTGACTCTCAGCTGTCCAGAGATATGGCGGGGTACATGCCTGCTCGAGCAGACTTCATGGAGGAATTTGATAACTACGCGGAATGGGATTTAAAAGATATTGATTTTGTTGATGACGACTCTGACATTCTTCATGctCTTAAAGTTGCGGTTGTGGACATATATCATTCAAGACTAAAGGAGAGACAGCGAAGGAAAAAgATCATTCGAGACCATGGACTAATAAACCTGCGCAAGTTTCAGAtaCTGGAACGACGGTATCCTAAGGAGGTGCAGGACCTGTATGATGCCATGAGGCGATTTGCCAGGGTGCTGGGACCGATCGAGCATGACAAGTTTATAGAGAACCATGCTTtggagtttgagctgcagagagagatTCGACGGCTGCAGGAATACAGAAAGGAAGGCATTCGGACGTTCTGTGGTGCCAAGGTGTATGAGCGGGTGAAGCGGGCGAGGGAAGACGAGCGCAGTAAGAGGAACATGCTGTGTGAAGTGCTGCAGTACCTCCAAGATGACCGTGCCTGCCAGCAGTGGCTCCACAAACAGGCTGCCATTGATGCAGGCATCACCCCAGTGATCACTACCATCACTACCTCAGGCAGAAGAAGTGCACCCCCTCTGAACTtaacagggttgccaggtacagAAAAACTcaacgagagagaaaaagagTTGTGTCAGGTGGTGCGGCTGGTGCCCGGGGCGTACCTGGAGTACAAGCAGGCTCTGCTGAACGAGTGCAGGCGGCAGGGTGGTCTCCGGCTAGCGCAGGCCCGCTCGCTCATCAAGATCGATGTCAACAAAACCCGCAAAATCTACGACTTTCTCATCAAGGAGGGCTACATTAACAAAGCCTAGCCCACGAACTGGACTGTGCACTTCTGGCAGGCAGAGAAGTGGCGACACATTCCATAACCTCGGAGAGAACCGAGACAAACGTAACCGAACTCTAAACTACAGGCGTCCTTTTGTAACAAGTGTCCAGGTGAAATGTTGTGAAGGGTCTGCGAAATCAAGATTAATTTTTCAGTGTTGTGATCAATTAAGACACTGAAACATCACTAAAGTATATATTGCCTTTTGTCCTCATGAATTTATGTGTtgcctttccttttctttctatcttttcaATTGACCAATACCTCAGAGATTGACAACATTTTATCATGTGAAATTTGATCTTGTGATGAATTACCGTGGCGTACACACGTTCaaccataaattaaatataaatcactCCCCAGAAAATGCa

Function

symbol description
tada2a Predicted to enable chromatin binding activity and transcription coactivator activity. Predicted to be involved in chromatin remodeling; positive regulation of histone acetylation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of histone acetylation. Predicted to be part of SAGA-type complex. Predicted to be active in nucleus. Orthologous to human TADA2A (transcriptional adaptor 2A).

NR:

description
PREDICTED: transcriptional adapter 2-alpha-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K11314 TADA2A, ADA2; transcriptional adapter 2-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669983.1 True 2100 mRNA 0.48 15 23158514 23177559

Neighbor

gene id symbol gene type direction distance location
traf4 traf4,traf4a,LOC108443497,LOC107758738,LOC107727926 coding upstream 93992 23001851 ~ 23064522 (+)
nek8 nek8,LOC107672375,LOC107758702,LOC107592757,LOC107661116 coding upstream 160232 22975520 ~ 22998282 (+)
LOC103023064 zgc:174895,LOC103023064,LOC107672400,LOC107657114,LOC107752376,LOC105911024,LOC108278204,LOC106612798,LOC108443501 coding upstream 211910 22940729 ~ 22946604 (+)
LOC103021948 LOC107694033 coding upstream 232998 22911025 ~ 22925516 (+)
LOC103043000 LOC107694033,LOC107592755,LOC107752375,LOC105911027 coding upstream 240674 22910951 ~ 22917840 (+)
dusp14 dusp14 coding downstream 13531 23191090 ~ 23202017 (+)
mrm3 NA coding downstream 239580 23417139 ~ 23421491 (+)
LOC103033181 LOC108411674,LOC108277977 coding downstream 354291 23531850 ~ 23544221 (+)
LOC103034256 flot2,LOC108411680,LOC106581211,LOC105011286,LOC106612814,LOC107727921 coding downstream 386789 23564348 ~ 23580240 (+)
LOC103033930 wbscr17,LOC108411682,LOC107714690,LOC107582595,LOC107727938 coding downstream 422859 23600418 ~ 23620855 (+)
G5736 NA non-coding upstream 81158 23077157 ~ 23077356 (+)
G5657 NA non-coding upstream 131958 23026142 ~ 23026556 (+)
LOC111192542 NA non-coding upstream 183567 22967991 ~ 22974947 (+)
G5642 LOC108443500 non-coding upstream 200015 22956060 ~ 22958499 (+)
G5640 rab34a,LOC103022556,LOC108443499,LOC107758713,LOC107672399,LOC107657101 non-coding upstream 206839 22949827 ~ 22951675 (+)
G5762 NA non-coding downstream 36132 23213691 ~ 23215367 (+)
G5768 synrg non-coding downstream 68573 23246132 ~ 23248019 (+)
G5801 dynll2a,LOC107554284,LOC103397138 non-coding downstream 157557 23335116 ~ 23339774 (+)
G5804 NA non-coding downstream 175178 23352737 ~ 23354154 (+)
G5827 glod4,LOC106612786 non-coding downstream 232900 23410459 ~ 23415587 (+)
LOC103024639 NA other upstream 2148 23081391 ~ 23156366 (+)
G5646 NA other upstream 193590 22964060 ~ 22964924 (+)
G5620 LOC107694033,LOC107752375,LOC107592755,LOC105030986 other upstream 235433 22902766 ~ 22923081 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other upstream 400301 22708912 ~ 22758213 (+)
LOC103041654 chordc1,LOC108412466 other upstream 484530 22642610 ~ 22673984 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other downstream 134953 23312512 ~ 23351306 (+)
G5871 NA other downstream 654677 23832236 ~ 23833830 (+)
LOC103035426 NA other downstream 662434 23839993 ~ 23847367 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other downstream 699440 23876999 ~ 23907474 (+)
LOC103027586 LOC108425877 other downstream 2234635 25412194 ~ 25428351 (+)

Expression


Co-expression Network