gdpd1 (gdpd1,LOC107672421)


Basic Information

Item Value
gene id gdpd1
gene name gdpd1,LOC107672421
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 23860045 ~ 23875492 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670357.1
CAACCCTGACTGCGTAGAGCGGCCGGCGGCGGATGGGCTTTACAGGACGGAGAGTGTTTAACCGGCCGCCTGTGGAGGAAAAAACGGGTGTTTATGGAAGCGGCGGAGCGGAGAGGAGCCGAACTCAGACCGGAAACCGAGACCGAGGCTGGGCTTTAAACCGGGGGGTCCCTCCGCGCTGCGCTGGGGGGCTGTATTACCGCGGTGTGAGCGGGTCAGAGAGCCGGCCGGTGCGCGGCTGTAGCGGGGGCGCTAGAGCAGCAGATGTTGGAGCCGCTGCAGGAGGCTTGTgtagctaggctaggctaagctaagttaggtTAGCCGCCGCTCTGTATCAGCTGTAGTTCACCAGCCGCTGTATTAGTGTTTATCCAGTCCGGGCTCGGCCTCGGCGGGACCGGCTGTGGGATGAGTGCCGCGGTGTACGTTTTATCCACGGTTACCGGCTACGTCCTGACTTCCGCACTGCTGCTGAAATGCCCGTCGCTACTGCACCGGAGAAAGCGGGAGACGTTCCGCAGCAAACACATCTCTCACCGCGGGGGTGCAGGAGAGAACCTGGAGAACACCATGGCAGCCTTCAGGCATGCTGTACAACTTGGCACAGACATGCTGGAGCTGGACTGTCACTTGACTAAGGACGAGCAGGTGGTGGTGCTGCATGATTCCAACCTGAAGAGGTCGACCGGTGTTTGCGCCAACATTTCGGATGTGGCCTACGCTGATCTTCCACCTTACTTGTGTAAGCTTGGGGTGACTTTCAAGCGAGAGTGTTTTGTAGAAGGTGGTGAAGACAAGAACATTCCTCTGCTGCGAGATGTCTTTGAGGCCTTCCCAAACACCCCCATTAACATTGACATCAAGGTCAATGATGATACACTTATCAAGAAGGTCTCTGAGCTGGTGGTGAAGTATGACCGGGAGCATCTGACTGTATGGGGTAACTCCAGGGACCAAGTAGTTCAGAAGTGTTACAAAGAAAACCCCCAGATCCCGGTGTTGTTCAGCTTGCCCAGAGTGCTGATACTGGTGGGGCTTTTCTACACAGGTCTGCTGCCCTTCATACCCCTTAAGGAGCAGTTCTTAGAGATTCCCATGCCTTCCATTACTACCAAACTTCGAGACCCCAGGCGGATGACACGGGGTGAGCGCATCATCACTTGGTTGGCAGACACCCTTCTCATGAGGAAAGCTCTATTTGACCATCTCACAGCCAGAGGAATACAGATTTATATATGGGTGCTGAACGACGAGGAGGATTTTAAACGTGCCTTTGACCTCGGAGCCACGGGCGTGATGACGGACTATCCCACCAAgctgaaggagttcctggagaaGAACGGTGTCCCGAAGTCCGAgtgacctgctgctgctgacggAGAGATTACAGCCGTTTCCTTTCTTGCCTTTCTTTGTGGTCTCACTGGGAGTAtcctaatctttttttttttttttgcacatctgcactcctggtgtaaggtaacaaaagcagcagcagcagccataAGCATGATGACCACTTTTTGAACACTATGGACTcttcgtttgtttgtttgttttttgttatttagaaGCCCTCAGTAGATCTCTGAGTAGTAAACAGTTAAACAGTAATCATTTATAATCACAGCAACGCAGAAGAGCCGACGTAACAGTCCGTTCAATCATTTTATTAAAGTGGTGTATCGTCCCGTCCGTACTGAATCCTCTGTTTCAGCAGTATTATTGTTAATGTGAAGATACGATaagtaaaaatcattttattcaaacattagAGGGGGCATATTAAATAATGGTGGGTCTTCAAATGTTACGTTATTACATTGATATTTCAActgtgtattttctattttgagatattaatgAGACACTGGAGTTTGTAAGGGCATGGGTAGCCAGGTAACCAGCAGGGGGCGTCGTCGTTATGCATTTAGTGCGTTTTGGTTGGTTTGGCCTGGGTTCGGCCAGTAATAGAGTAGTGCACAACTTGGGAGCAAAACATGACTAAGTAGTGCGCCTCTTTTACACGTTTACAAGTGAACGCTTCTATCGGTGAGCATTTCTCTTGTACAGTCGTATGCAAATGTTTCATAGAATAATTGTACATGCTTGATGCTtgattttaaagaatttaagtGAATATAAATacgcatttttttattttattttttttacaaagaacacGCCTTACGTTTATTTGCTAAGTGTCATTGCAAAATGACATTCACAATACTATAGAACATTATAATATTTTCAAGTATGAAACACTGACCaaggccaaaagtcatgggacaggaggACATGGGAACATTTGCTCTCTTTTATgggatatgtatatataaataaatacatatttatttcttattttcatcattattaatttattcacgAAATGTAATCACTCTCTCCTCCCACAATAGAATGTAGAAATAACTACGTgggataccttagcaactgtctagcagcgtcatagcaaccactttaaatataacaacatttgcctagaaaccacttagcaaaacctCAGCAATCATTCTAGTTATAATGGAACCtgactagcaaccacctggaatgaCCTCATTAACttcctagcaacaccttatcaccACTTAAGATATTCTAGTAACTGCTTAGCTACcacatagcaacgccttagcaataACTTAAGATATGAAGGAACCTGCCTAGCAACTACCTAAAATACCTTttcaactgcctagcaacaccttagcaatcactttAGATCTGAGATCTAGCAACCACTGGGACTCCTTTATTAACTGCCTATCAACACCTTATTAAATACCTGGAATACCTtatcaactgcctagcaacacattagcaaccccctagcaacaacttagcaacaccttagcaatcactttAGATCTGAGATCTAGCAACTACCGGGAATCCTTTATCAGCTGCCTAGCAACATCTTACTAAATGCCTGGAATACCTTGTCAACTGCCTAGCATgtcaacctagcaaccactcaaAAATACCAGATACCACTAATCACAGTCATTACGAAATCCGTCTCCCATTCATCTGGTTCCCACTACCAGGACGCCTTAAATGAATTTATCCAATAATTCCTTTTTCTTGACCAGTGTTCAGCtctcacaagatatcacctcgCACCTTATACATGTGTGGGTGTTTACATGCTGTCCCCTGTGACCATAACACAATATGGACAGTTTACTGCTATTCCATGTCTTTTGGCATGTCTATCAGTATATCTttagcaaataaacataaacaatgtTCTGAACTGAGCGGAGAAACAGCATGTTTAAGTTCATGTTCTGTAGAGCATCAGTCAGACTGTAAACGAACTTTGGATCGTTGTGGACTTTTGCATACGACTGTATAAATCAGTGACTGAAATACAGTGTTCTATTACTGTATGAATTTTGTTAAACCACAAAGttgttttttgtgtcttttcTGCTGTGTCTCTCTTCAGCTTTTTCCAGAATGAAACAATGAGTTTTTGTTTGCGTCATTCTGAAAGCCAATCAGAAACTGCCTGTAGATTGTTACAGAACGCTGGGGAGGAGTGGTGAAGGGCATTGttgttgtatttatattatctaatacaaataatgatgatgatgcccAGCTCTGCACATATTCTGTTCAGTTCTGACAGAATGCCTTAACCgacacttactggccactttattagaaacaccttaacaCCTTGTAGGTCCTACTTGTTTGCGGATGGTTCTGCACATTTATTTTGcgtgttttctgttgtttcttctgtttggtaaatcctctgtggcttgaatttttttttttgttatttggagagaaaaaaaacaagcactggttaaaaataagttaaataagtaaataaaaccaaataaaaaaatttaatttaaaacctcAATATAGGCGTTACCACTAGAATTAGtaaattgctggtttgaatcccagtcatgcagcttgctatcagcagccagagttggAGAGAGAAAATTTGGAGTCATGgatgcacatatacatatatcttaattggatttaaatgaaaaaaatgttagaacatatatttatctttatctattgcTGGTTTTGTGTCCTATGTGACTTTGGTTGCTAAAAAGATTGCTCCACCTCCAGAATCTTAAACcagattcttcttcttcattttaTTGAAATGGAGACTTGTTGTATgacatattaaaacaatattgtaaaaatatttaatttaatgtattgcTAATTGCTAAAAAATggtgccatagagggttaatacTGTCGGATGGAAACTttttgtatctccaaaatggcaacttcACAGGAGCTGGAAAAACCTTAACTTTCAGTAGAAGTCaaagtacaaatattttaatctaAGAATTTTTGAAATATTTCTTTTGGTCCGTTCTGTATAATATTTAACacaatgaagaaaaagaacagcAGCTAGATTCACATTGTGTCAAATGTGGCAAAACAGcagaaatatacaaatatacatagTAGTGGTCTAGCAGTGACTGATTCTGTTGAAGATCTGTTTCCAGCAGCTATCCAAATGTTGGTCTGATTGTGCAAGGCTCGTGTAGTGAGGTGGAGTCCTAACTAAGGGGTGGAGCTTGAAATTTAAGCATCCATCTTTGCAATGCCGTCTGGCAGACTTTTGGATCTTTCAAGGGGGGAGGCCAAAATACAGGaaatttaaggtaaaaaaacTCTTTTCAAGGACCGATAAAGCCTGATAACTTTTTTTCATAGCTTATATAATAGCATTTCTGTCGGCTGCGCAGATTTCCCATTTAAACACGCTGAGCCTTCTCTGCTCTTGTGCACAAGcagaaagctgattggctctttttgttgaacTGCGGGACTTCGTCCGCAAACCGATGCCATGTTGAGCATCACAAGAACTCTTTAATTCTTATTCAAACCAGTGGCCAGTCTCCTCATTTTACAGCATAACGTCAGTTATAAATGGAGCTATAAGGGAGGTGGACctttaataaagtggtcagtaagtagaagtaaaatatatatggtaGGTATATCTAAAGTTTTAAATTAGACTTGAGCTTAGAAGGGAAGAAAGTTAAGATGGACTGAGGCTTATTTTGTACAAGTGATGCCAGACTTGAATTAAGTTCTTGAAAATAAGGACTTTTATGTTGCCGAGCAGGTCAAGCACATCGTGTCTATTACAAGCAAAGCCATGCGTGATTTATAGCTTTTATAATGTTCTTTACATGACGGCTATTCATAGTTTGTGGCCCTCGCCCATTTTGACAGAAGTATTGatgatgtttatttatatgaaaCCAAGCAGTTGGCAGCAGTTTCGCCTTGTAATGAGGGGAATTGACAATTGACAACTTAGATTCCTACGTGTTAAGtcattaaagcaaaataaagcaaatatacattatttaaggtttgtgaataaatactgcTGATCCATGCTGATTATAATGGGTTTAATGGGTTTATGTAAGTAGATAATgcaaaaaattgtaatttattgtCTAAATAATTCTCTTTTCCCCTTGTTTTCCCCCTTTGTTCTCTTAGcgtagtaaaatgtgttttgtaataTAAGCGTAGAGCAGAAAAAACCTGTAGGCCAGGTATTATAAATGATGATAGCACAATCAAAAACCTTGGCTGTAGCTGAAATGGATTCTTACTCCCTATGTGGGATCTCCTGGGCTCTCAGGTTTCCTCCCACAGACAAATCATGCACCTCTAAAACTGCCAttgtgttaatatatatttatatatgtttatatgccCATATATGGATTGCCACTCTGTTCTGAGTCTGTgaggttgtttccggttgagagtatgctgcgCACAATTGGTTGACAACACAATATCTGTTGCTTAAAAATGAGAATCTCAGTGCATTTTTGTCCACATGCAGCTCATGTAGTGAGCTACAGTGTTCACTGTGAGTTGTGATGAGTGGACTGAAGGACATTCCAATGGCCTCAGAATTACGTTAAAATTCCACAAACAAGTATTGATTTCAACACTACTGAGAATTGCTAATGTACTCAAAAGCACTCTAAATATTATATGTAAGTATATGTAAATAGCAAGAAAATAGGGATCCATTTCAGTCTCAGACCTTGTTTAATGCAGTATATTTATGAATGTGGAAAAAGCCATTCCAGGATGCCAGTTATGACAAGAGATTTTTATAAGTTTTAAGTGATCCCAAATGATTTAAAGCATCTTAGTAATCTCTGAACAGCTTTACATTAGTGCGTTACTTGTGTAAATGAAAATGGGAAGGTGACTGAAGGCGATTTAAGCATAAGCATGCtgaatagctttaaaaaaagaagaggggGAATCTATTTTAAAAGCGAATTCCTAAAACTGTTTCCTCACTTTGTTTCATTGTGTCCTGCTGTTTGTGCATCTTCTTTacactgtatgtaatgtatttacTGTGGTCATTTGCCAGtggtttctttgtgtgtgtgcaatactctattgacttttattttcaGCACATTTGCACATTGACTGAATGTTTCTGTCATTCCACATTCAGAGGTTCAGTTGCTATATTGATTTGAATGCTGCAGTGATTTGTAAATACTTTGTCATTGAAAATATTTTGAATGAAGATATTCATGCaa

Function

symbol description
gdpd1 Predicted to enable lysophospholipase activity and phosphoric diester hydrolase activity. Predicted to be involved in N-acylethanolamine metabolic process and glycerophospholipid catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human GDPD1 (glycerophosphodiester phosphodiesterase domain containing 1).

NR:

description
glycerophosphodiester phosphodiesterase domain-containing protein 1

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG:

id description
K22387 GDPD1_3, GDE4_7; lysophospholipase D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670357.1 True 6647 mRNA 0.40 10 23860045 23875492

Neighbor

gene id symbol gene type direction distance location
LOC103033930 wbscr17,LOC108411682,LOC107714690,LOC107582595,LOC107727938 coding upstream 239190 23600418 ~ 23620855 (+)
LOC103034256 flot2,LOC108411680,LOC106581211,LOC105011286,LOC106612814,LOC107727921 coding upstream 279805 23564348 ~ 23580240 (+)
LOC103033181 LOC108411674,LOC108277977 coding upstream 315824 23531850 ~ 23544221 (+)
mrm3 NA coding upstream 438554 23417139 ~ 23421491 (+)
dusp14 dusp14 coding upstream 658028 23191090 ~ 23202017 (+)
clptm1 clptm1,LOC107715057,LOC107727917 coding downstream 106025 23981517 ~ 23996273 (+)
LOC103021374 LOC103021374,LOC108411837 coding downstream 126638 24002130 ~ 24010615 (+)
atg16l1 atg16l1,LOC107689588,LOC107551872 coding downstream 137153 24012645 ~ 24038337 (+)
LOC111192623 LOC108411842 coding downstream 168905 24044397 ~ 24056710 (+)
dgkd dgkd coding downstream 189187 24064679 ~ 24087802 (+)
LOC103043618 NA non-coding upstream 31562 23827210 ~ 23828483 (+)
G5861 tyw1,LOC108443711,LOC108278267,LOC107727925,LOC107716137,LOC107659914 non-coding upstream 35974 23784094 ~ 23824071 (+)
G5858 NA non-coding upstream 86678 23746959 ~ 23773367 (+)
G5845 NA non-coding upstream 222849 23582369 ~ 23637196 (+)
G5827 glod4,LOC106612786 non-coding upstream 444458 23410459 ~ 23415587 (+)
G5830 NA non-coding downstream 40579 23916071 ~ 23918384 (+)
G5892 hip1 non-coding downstream 52089 23927581 ~ 23930231 (+)
G5893 NA non-coding downstream 57158 23932650 ~ 23934352 (+)
G5895 NA non-coding downstream 61760 23937252 ~ 24033261 (+)
G5905 NA non-coding downstream 147444 24022936 ~ 24023904 (+)
LOC103035426 NA other upstream 12678 23839993 ~ 23847367 (+)
G5871 NA other upstream 26215 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 508739 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 703679 23081391 ~ 23156366 (+)
G5646 NA other upstream 895121 22964060 ~ 22964924 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other downstream 1507 23876999 ~ 23907474 (+)
LOC103027586 LOC108425877 other downstream 1536702 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 2164664 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 3043799 26919291 ~ 26931495 (+)

Expression


Co-expression Network