LOC111192631


Basic Information

Item Value
gene id LOC111192631
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24157595 ~ 24161442 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670361.1
GAcagtgatgtgattggctggctgGCTCGGGAAGACTCTTATGGTGGTGGATCCGCGGGCCCAGTCCAACCAGTGGATCCAGTAGTGAGAGTGAGGAGAATTGAACTGGTGCAGATCAGCTGTTGAGGTTTCCAATTAACTCCAGAAACCCACCAGGAGAAACATGTCAGACTTAGAAGAGACACCACATGAGGATCTGGCATCCAGAAGAAGCTCCAGCCCTCAGCAGCAGGAGATCTCTGGTACTGTAAGCACTGACACTTTCGACACACACCTGCAAAACGAGACCCTTTACCGGTGTCCAGAGTGCGGGAAGAGCTTTAATCAGCAGAGTAACCTGAGGAgacaccagctcattcacactggagagaaaccgtactACTGTCCTGACTGCGGGAGGAGCTTCAACCGACGGGGGAATCTCCAGCAGCATCAGCGCGTTCACACAGgtgagaaaccgtatcactgctctgactgtgggaagagtttctCCCAGCAGAGTACTCTCAACactcaccagcgcattcacaccggagagaagccCTTCTACTGCTCGGACTGCGGGAGGAGCTTCACCCAGCTCAGTAACCTGCAAGGCCATCGCTGCGTTTACTCCCAGCTGAAGCCGTACTGCTGCTCAGAGTGCGGCAAGAGCTTCAACCAGCCCGGTCATCTCCAGCTCCACCTGCTCGTTCACTCCGGAGAGAGGCcgcatcactgctcagagtgcggGAAGAGCTTCAACCGGAGGAACCATCTCCAAACACACCAGCTCACCCACACCGGAGAGAAGAtccatcactgctcagactgcggGATGAGCTTCAACCGGAGATACAACCTCAAAGCACACCAGCGCATCCACACCGGAGAGAAGCtgtatcagtgctcagactgcGGGAGGAGCTTCAACCAGCAGAGCACTGTTCAGAGACACCGGCGCATCCACACTGGAGGGAAACAGTATTACTGCTTTCCATGTGGACAGAACTTCAGCCATATGACCAGCTTTAAAACACACCGGTGCTCTGGAAGGGAGGTGGAAACTCGTGATGTGACGTGATGTGATCtatgagttaaatgaacatttacaCTGTTAGTTTATCTGACTCTCTTATTCAAAGCTCTTATATTTGGATTATGTTGCACAAATAGGAAAATGTAGAGTTGGGAGTCTTGTCAAAGGACTCTTATTGTCTACCATgagaattgaaccccagtctttTACAAGAAACTCTCTTCCTGTTTACTCTACACCAGGGTTTCTCAGTCAGTGGGGAAGGAAGCACTTTATAGGGAGGAGGTCTGTAGCTAGACGGTACCTGCACTGCTGCTAAGACTGGCTGATGCATGGCGTTCAAAAGTTTATCAGAAATCATCATAAATGTATGTGTATGACCATTAGTGATGGGacgatacacttttttcagctccgatccgataccgatataaaactgatataagattgctgataccgatacaaatactga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670361.1 True 1490 mRNA 0.50 2 24157595 24161442

Neighbor

gene id symbol gene type direction distance location
LOC103043883 NA coding upstream 647 24155639 ~ 24156948 (+)
LOC103042016 NA coding upstream 9024 24129284 ~ 24148571 (+)
LOC103047855 LOC108410431 coding upstream 37297 24102558 ~ 24120298 (+)
ilkap ilkap coding upstream 56362 24094276 ~ 24101233 (+)
dgkd dgkd coding upstream 69793 24064679 ~ 24087802 (+)
LOC107196838 LOC107196838,LOC108410423 coding downstream 5035 24166477 ~ 24170637 (+)
LOC103043067 LOC103043067,LOC108410425 coding downstream 11944 24173386 ~ 24175817 (+)
LOC103042333 NA coding downstream 15902 24177344 ~ 24179644 (+)
LOC103021580 grik1b,LOC108410432,LOC107669874,LOC107670116 coding downstream 20117 24181559 ~ 24216852 (+)
usp16 NA coding downstream 74409 24235851 ~ 24248495 (+)
G6051 NA non-coding upstream 32233 24114947 ~ 24125362 (+)
G6049 NA non-coding upstream 48598 24107964 ~ 24108997 (+)
G5898 NA non-coding upstream 67113 24088651 ~ 24090482 (+)
G5913 NA non-coding upstream 76234 24080638 ~ 24081361 (+)
G5908 NA non-coding upstream 128526 24028653 ~ 24029069 (+)
LOC111192653 NA non-coding downstream 91713 24253155 ~ 24253912 (+)
LOC111192656 NA non-coding downstream 110108 24271550 ~ 24279468 (+)
G6167 NA non-coding downstream 222993 24384435 ~ 24384926 (+)
G6168 NA non-coding downstream 223661 24385103 ~ 24394430 (+)
G6189 NA non-coding downstream 263420 24424862 ~ 24429277 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 250121 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 310228 23839993 ~ 23847367 (+)
G5871 NA other upstream 323765 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 806289 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 1001229 23081391 ~ 23156366 (+)
LOC103027586 LOC108425877 other downstream 1250752 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 1878714 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 2757849 26919291 ~ 26931495 (+)

Expression


Co-expression Network