LOC103042333


Basic Information

Item Value
gene id LOC103042333
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24177344 ~ 24179644 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670407.1
gacattgctgctcccgttctgcctttcactctgataactttttactgttttttataataACTACATTTTACTTTCAGGACTTcattactacattttacaatatactactGCAGTACCTAAGTACAAAAAATGTAGAACACTTTAATACTTCtacttaagtgtggagcttaaacACTTCAGCTTTTACTCAGGccacttttttgatagagcacttttACTTTATACATGCTCCTTTCTAACACAGATCCTCCCTCTCTTGGTGAGAGCTGGTCCTGGTGCAGAACATTGTGCAGATAGGGATCTGGAGAGTGGGagtcttattttctttctgctGTATGTTTAGTAATAACCATGGTCAGAGTCACCCACATGAGAAAGGCACAACAAACACAGCGTTACAGAAGCCCTCATCTTCACGAACCAACCCAAAAAGAGCTGATCACTTCCCATAACAAAGagtcagagagggagagagggtcAGCACCATTCCACCACTTTCCATCTCATTCAGGCGACACTCGGAGACTTCCACAGTCTCTTACATCTCTCTCGCTTCTTGGATGGGAATGCTTTAACTTTGGGATTTAAATGCGATTACCTCACCTTGTCTCTggatctgtgttttctgtggaCTTTGATCTACTAGTTCCATTTGGAAAGGTCTGATTTCCATGGTGagtttacctacctacctttacCTTGTTTCCTGATGCAGAAGTGTTCAGGAAGGGTTTGTCTATCATCAGTCTTTGGCAGTCAATTGTTATTGTTACTGCCACTGGGATAACTAGATTCTACCTCTCCTGCTGCTGCCAGAAAATGTCACAAGTGTAACCAGTTACATACCCTGGTTACTCCTGGACTCGCCCGTCATTGGCTCAACGTCCTCCTGGGCTGAGACCTTTCTCAGAACCTTTGTCTGCAGTAAAATATACAATGGTTGCTGCCTGTGAACTCATCGCTCTGTGTCTGGGTGTCATTGGTCTGGTGGGCACTTCCGCAACTACAGGCCTCCCCATGTGGAAGGTGACGGCCTTCATCCAGGAGAACATCATAGTCATGGAGACTCGCTGGGAGGGTCTGTGGATGAACTGCTTCCGACAAGCCAACATCCGGATGCAGTGCAAAGTGTACGACTCCCTGCTGTACCTTCCGGCGGAGCTCCAAGCCGCCCGAGGCCTCATGTGTTCTGCTGTTGCTTTGAGTTTTTTGGGACTCATAACATCCTTTCCAGGCCTCGACAGCACAGCCTGCCTTCAAGGCCAACCTCGCATCAAGTCCCTCCTCCTGGCGATCGCTGGAGCAATGCTGGTCATGGCTGCCCTCTGCGTCATCATCCCTGTCTCCTGGACAGCTCACGTCATCATCCAGGACTTCTACAACCCTCTGCTGCTGGACGCCCAGCGCAGGGAGCTGGGTGAGGCGCTCTACATCGGTTGGGTGACGGGAGCAATTCTCTTTGTCTCTGGTGTGCTTTTCCTGTCCTGCCGATCTTCTTCAAAATACGGTTTGTCTCAGCTGTACCAGCCCGTCTACACGACCAACAGCTCAAACCTATCCCAAACCTACCCCTTCAGGCCAGTGCCGAGCTCCATCAACTCCTTACCCCAGCAGCCGCTCCTACAAGGCCACAACCTGACCCATCAGCAGTCATTATCTTCAACCTACAGCCCTGTGGCGGTGAACACTGCGAGCCAGCCTGTGCTCTACAACCCCCAACTCGCAGCTCCCAGTGTTCCCGTGGTGTACAATGCCCACCAGCACCAACAACTGTCTGCACAGGACTTGGAGAGACTTTCCAATCACAGGAGCTCTGCCCACATCAGCCTCATGTCTGCATCCCGGCCATCGGCACAGCCCACCACACAACTACCGGTTGTGTATGGATACGGATACTCCAGAAACGGGTCGGACAACACAGTGTCCTCAGCCAACTCCGGAGTGTACATTTAAAAACCCTCCCCATCCAAACATTCTGCACACAGAATGCAAATCAGAGGAAATTATTGTAGTTAATTGGATAAATTGGTCttatgtgtaatgtgtgttttaaaccttatataaatatatataaatgcttcTAGCATTGTGAAGATTTTCATTCTGAACTGTGAAATGATCATTTCTGTTCTGAAACGATTTTATTTGTAGTTATAATGTATTAAATTTTAAGCTATGAAAGTTTCCTTGTACATACCAGTGCTCACATAGTATTACTTAGACATAAATAGGGATATTAAtggttttaaaggtttaaaagcTGTGTTGTGTGAttctatttaataaaatgttaaatgaaaA

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670407.1 True 2301 mRNA 0.46 1 24177344 24179644

Neighbor

gene id symbol gene type direction distance location
LOC103043067 LOC103043067,LOC108410425 coding upstream 1527 24173386 ~ 24175817 (+)
LOC107196838 LOC107196838,LOC108410423 coding upstream 6707 24166477 ~ 24170637 (+)
LOC111192631 NA coding upstream 15902 24157595 ~ 24161442 (+)
LOC103043883 NA coding upstream 20396 24155639 ~ 24156948 (+)
LOC103042016 NA coding upstream 28773 24129284 ~ 24148571 (+)
LOC103021580 grik1b,LOC108410432,LOC107669874,LOC107670116 coding downstream 1915 24181559 ~ 24216852 (+)
usp16 NA coding downstream 56207 24235851 ~ 24248495 (+)
farsb farsb,syfb,LOC107585746 coding downstream 74284 24253928 ~ 24261667 (+)
LOC103047234 NA coding downstream 103678 24283322 ~ 24287126 (+)
LOC111192659 NA coding downstream 112284 24291928 ~ 24296350 (+)
G6051 NA non-coding upstream 51982 24114947 ~ 24125362 (+)
G6049 NA non-coding upstream 68347 24107964 ~ 24108997 (+)
G5898 NA non-coding upstream 86862 24088651 ~ 24090482 (+)
G5913 NA non-coding upstream 95983 24080638 ~ 24081361 (+)
G5908 NA non-coding upstream 148275 24028653 ~ 24029069 (+)
LOC111192653 NA non-coding downstream 73511 24253155 ~ 24253912 (+)
LOC111192656 NA non-coding downstream 91906 24271550 ~ 24279468 (+)
G6167 NA non-coding downstream 204791 24384435 ~ 24384926 (+)
G6168 NA non-coding downstream 205459 24385103 ~ 24394430 (+)
G6189 NA non-coding downstream 245218 24424862 ~ 24429277 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 269870 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 329977 23839993 ~ 23847367 (+)
G5871 NA other upstream 343514 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 826038 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 1020978 23081391 ~ 23156366 (+)
LOC103027586 LOC108425877 other downstream 1232550 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 1860512 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 2739647 26919291 ~ 26931495 (+)

Expression


Co-expression Network