LOC103021580 (grik1b,LOC108410432,LOC107669874,LOC107670116)


Basic Information

Item Value
gene id LOC103021580
gene name grik1b,LOC108410432,LOC107669874,LOC107670116
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24181559 ~ 24216852 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670412.1
ctctctctctcctctattactctctctctctccctctctctgtaatCTGTAGATTAAGATCTCCTGCTGTAATCATTTCCTCGTGTACCGGAGTTGCCGCGCGCCGCTGCTACCAGATTTTCCGGTAATCTCGTGCGCGGGTCcagtgtgtgattagtgtgtgtgtagtctgtgaattgagtgtgtatagtgagtgagtgtgtgtgtgtagagtgtgaggGGCCTCTGGACCGGTGCAGTGCGCGCGCTGGTGTTGTGGATGAGCGGAACCCCGCGCGCTCGCCGGGTATGAGCCGCCCGGCACCGGAGAGCAGCGCGTGCGGGCGCCGGGAGGACGCCGAGCTAAGCTGCTGGAGCGGAGGCGCGTGAGCACGCGCGCGCCGCGGCGAAGATGAGGAACGGGCGCGAGCTCCGGGACGCTGAAGGGAAAACCGGACCTCAGTGAGACCATGGCCAGATTCATCCCTTTACTGTGGCTCGTGACGGAGCTCCGCGCGAGCGCCCAGCAAGTCCTGCGCATCGGGGGAATATTCGAGACGTTGGAGAACGAGCCGGTCAGTGTGGAGGAACTGGCGTTTAAGTTTGCAGTCACCAACATTAACAGGAACCGGACGCTGATGCCCAACACCACCCTCACCTACGACATCCAGCGCATCAACCTGTTCGACAGCTTTGAGGCTTCCCGCAGAGCGTGTGACCAGCTGGGTCTGGGTGTGGCTGCAGTATTTGGCCCCTCCCACAGCTCCTCGGTCAGTGCAGTACAGTCCATATGTAACGCCCTGGAGGTGCCGCACATCCAGACCCGGTGGAAACACCCATCTGTGGACAACAAGGACAGCTTCTACATCAACCTCCACCCAGACTACGCCCCCATCAGCCGGGCCGTGCTGGAGATCGTGCAATTCTACAAGTGGAAAACCGTCACAGTGGTGTACGAGGATGCTACAGGTCTGATTCGTCTGCAGGAGCTGATTAAAGCTCCCTCTCGGTACAGTATTAAGATAAAGATCCGGCAGCTCCCGGTGGGCAGTAAAGACGCTCGGCCGCTTCTTAAAGAGatgaagaaaggaaaagagtTCTGCGTGATCTTCGACTGTTCCTACCAGACTTCAGCCGACGTTCTAAAACAGTTGCTGTCTATGGGTATGATGACCGAGTACTACCATTTCTTCTTCACCACACTGgaCCTGTATGCTCTGGACCTGGAGCCGTACCGGTACAGCGGGGTGAACATGACGGGTTTCCGGTTACTGAACGTCGATAACCCCGAGGTGGCgacagtgctggagaaatggTCGGTGGAGAGACTGCAGGCTCCTCAGAAACCCGAGAGCGGCCTGACCGATGGCATGATGACGACAGAGGCGGCGCTGATGTATGATGCCGTGTACATGGTGGCGGCGGCGGCACAGCGGGCGTCTCAGATCACCGTCAGTTCTCTGCAGTGCCACCGACATAAACCCTGGCGCTTCGGCTCGCGCTTCATCAGCATGTTCAAAGAGGCTCAGTGGAATGGACTGACGGGACAGATCACCTTAAATAAGACGGACGGCTTGAGGAAGGAGTTTGATCTGGATATTATCAGTCTAAAAGAAGACGGCATGGAAAAGAACGAAGCTGGGCGCTTTAATAAAGTTTGGAAGAAgATCGGGGTTTGGAACACCAATCTGGGGCTTAATTTGACTGACAGCGTCCGAGACAAGACGACTAATGTTACAGACTCCATGGCCAACCGGACTCTAATCGTCACGACTATTCTGGAAAATCCGTACGTGATGTACAAAAAGTCTGATAAGCCTCTGTACGGAAATGACCGATTTGAGGGATACTGCCTGGACCTCCTGAAGGAGCTCTCCAATATCCTGGGCTTTTCCTACGAGGTTAAACTGGTGTCAGATGGGAAGTACGGTGCCCAGAACGATAAAGGCGAGTGGAACGGGATGGTCCGAGAGCTCATAGATCACGTGGCGGATCTGGCCGTGGCTCCTCTCACCATTACCTACGTGAGGGAGAAGGTGATAGACTTCTCCAAGCCTTTTATGACTCTCGGTATCTCCATCTTGTACCACAAGCCCAACGGCACCAACCCGGGGGTATTCTCCTTCCTCAACCCGCTGTCGCCCGATATCTGGATGTACGTTCTGCTGGCCTGCCTCGGCGTCAGCTGCGTGCTCTTCGTCATCGCCAGGTTCACTCCGTACGAATGGTACAACCCTCATCCCTGTAACCCGGACTCTGATGTGGTGGAGAATAATTTCACTCTGATTAACAGCGTGTGGTTCGGCGTTGGAGCTCTGATGCAGCAAGGTTCAGAGCTGATGCCCAAAGCTCTGTCTACCAGGATCGTTGGTGGGATCTGGTGGTTCTTCACCCTCATCATCATCTCCTCCTACACGGCTAACCTGGCTGCCTTCCTCACCGTGGAGAGGATGGACTCTCCCATCGACTCGGCCGATGACCTGGCCAAGCAGACCAAGATCGAGTATGGAGCCGTGAGGGATGGGTCCACCATGACCTTCTTCAAGaaGTCAAAGATTTCCACCTATGAGAAGATGTGGGCCTTCATGAGCAGCCGTAAGAACACGGCTCTGGTGAAGAACAACCGCGAGGGGATTCAGCGCGTGTTGACCACCGACTACGCCCTGCTGATGGAGTCCACCAGTATCGAGTACATCAGCCAGAGGAACTGTAACCTCACCCAGATCGGGGGGCTCATAGACTCAAAGGGATATGGAGTGGGGACCCCAATTGGTTCTCCATATCGGGATAAGGTGACCATAGCGATTCTGCAGCTGCAGGAAGAAGGGAAGCTGCACATGATGAAGGAGAAGTGGTGGAGAGGAAACGGCTGCCCGGAGGAGGACAGTAAAGAGGCCAGCGCTCTCGGCGTGGAGAACATTGGTGGAATTTTCATCGTTCTGGCTGCTGGGCTGGTGCTGTCCGTGTTTGTGGCTATTGGAGAGTTTGTGTACAAATCCCGGAAGAACCTGGATGTGGAGGAGGTCAGTGTGGGCCAGTGTGAGTGGCACAACAAGTTCTGACAGACGAAAAGTGTCCAGAGTCATGGACACTGCCACTTTAACACGGAACGTTCTGGTAAACGTTCTTCTTATCGTCATTCTGAACGTCTTTGGTTCTGGACAAACGTTCTGCGGATCAAATTCTGTGTGGAATTCAGTTTCGGCAGCTCACAAACTGCACTGGTTACCAGCACCAAGAACATCGCCGGACTGCTTTAGTTTGGGACGATGATTAAATAGCAGATTGAGCCTCTAAGAAATTAAGTATTATTTTCGTAGAGTAGTTTATATCCTTGTAGATTTCCTTTAGACGAGAGAAAAGTGAACGTTTTCTGGTTCAAACCCTTTTTCTGAGGTTTTGCTTTAAACATGAGGGTGGTTGTTTTGTGTTGACTAAGTGGAAATAAACCACCAAAcctataaatgaataaaattatttgATATGGTAAACATTACATActtaataatgtataatgttaaatgtataaattcaGTTGTAGGTGCTGATGAGGTTCAGGTAAGTTTTTGATTGAATTTTTCGTTAAATGATTTAATTCTAAAAGCATCAgttttgctctttttctcttatttcactcatttaGGGAATTTATTCTATCATATACTCAGTGATGTCTGCTTTTATATAGTTTGACGTTAAAGGAAATGCTTGTAAAACTTTTGTGAGTTTTGTGTGATATGTGAGATCAGAGcgtatgttttattttcatattttcatttatttatttggtctTCCCctatttctttattgtttttttctgtatggaagattttgtgagtgtgtgtgtaataagctGTGCTGCCATAAAACCTCTGTTCACCCTTTATTGTCCTCTATAATCTAGTAATTCAGATTCTGAATTTCGATTCCAATGTTTTCGCtttaatcagtttaaaaaagatatttgattaaattaacaaaatatcAGCTCTGTGTTACAGCTCACACACAGCCAGGTAATACTGATCACATTTCTGTTAAATAACAATAATCTGTTTTAGCGTAGCATCTGGTGCAGTAAAGCTGCAGAAAGTAATCTGAAAACACCACAAAGaataatgtggtaaaatcacagAGAGTAATGAGCTCATAATGAGCTCataaacagtacagttgtaaTGACAGAAAGCAATGTGAGAGTAAGAGAGTAACATCATGACACAGAATGTAATGGGCTTAAGAGCATAGCAAATGTTGTGATGTCATCACAGGGACTAATGTGGTAAGAGCTCATAAACGGTACAGTTGTAATGACAGAGAGTAATGTGATCTCATCACATACAGTAGTAATGTGATTACATCACAGAGAGTATTATAGTAATGCCACTGAGAGTAACACAGTTACATCACAGGGATTTATtgcattgttatttttattgaataaatTATGTTATAAGTATTTAA
>XM_022670416.1
ctctctctctcctctattactctctctctctccctctctctgtaatCTGTAGATTAAGATCTCCTGCTGTAATCATTTCCTCGTGTACCGGAGTTGCCGCGCGCCGCTGCTACCAGATTTTCCGGTAATCTCGTGCGCGGGTCcagtgtgtgattagtgtgtgtgtagtctgtgaattgagtgtgtatagtgagtgagtgtgtgtgtgtagagtgtgaggGGCCTCTGGACCGGTGCAGTGCGCGCGCTGGTGTTGTGGATGAGCGGAACCCCGCGCGCTCGCCGGGTATGAGCCGCCCGGCACCGGAGAGCAGCGCGTGCGGGCGCCGGGAGGACGCCGAGCTAAGCTGCTGGAGCGGAGGCGCGTGAGCACGCGCGCGCCGCGGCGAAGATGAGGAACGGGCGCGAGCTCCGGGACGCTGAAGGGAAAACCGGACCTCAGTGAGACCATGGCCAGATTCATCCCTTTACTGTGGCTCGTGACGGAGCTCCGCGCGAGCGCCCAGCAAGTCCTGCGCATCGGGGGAATATTCGAGACGTTGGAGAACGAGCCGGTCAGTGTGGAGGAACTGGCGTTTAAGTTTGCAGTCACCAACATTAACAGGAACCGGACGCTGATGCCCAACACCACCCTCACCTACGACATCCAGCGCATCAACCTGTTCGACAGCTTTGAGGCTTCCCGCAGAGCGTGTGACCAGCTGGGTCTGGGTGTGGCTGCAGTATTTGGCCCCTCCCACAGCTCCTCGGTCAGTGCAGTACAGTCCATATGTAACGCCCTGGAGGTGCCGCACATCCAGACCCGGTGGAAACACCCATCTGTGGACAACAAGGACAGCTTCTACATCAACCTCCACCCAGACTACGCCCCCATCAGCCGGGCCGTGCTGGAGATCGTGCAATTCTACAAGTGGAAAACCGTCACAGTGGTGTACGAGGATGCTACAGGTCTGATTCGTCTGCAGGAGCTGATTAAAGCTCCCTCTCGGTACAGTATTAAGATAAAGATCCGGCAGCTCCCGGTGGGCAGTAAAGACGCTCGGCCGCTTCTTAAAGAGatgaagaaaggaaaagagtTCTGCGTGATCTTCGACTGTTCCTACCAGACTTCAGCCGACGTTCTAAAACAGTTGCTGTCTATGGGTATGATGACCGAGTACTACCATTTCTTCTTCACCACACTGgaCCTGTATGCTCTGGACCTGGAGCCGTACCGGTACAGCGGGGTGAACATGACGGGTTTCCGGTTACTGAACGTCGATAACCCCGAGGTGGCgacagtgctggagaaatggTCGGTGGAGAGACTGCAGGCTCCTCAGAAACCCGAGAGCGGCCTGACCGATGGCATGATGACGACAGAGGCGGCGCTGATGTATGATGCCGTGTACATGGTGGCGGCGGCGGCACAGCGGGCGTCTCAGATCACCGTCAGTTCTCTGCAGTGCCACCGACATAAACCCTGGCGCTTCGGCTCGCGCTTCATCAGCATGTTCAAAGAGGCTCAGTGGAATGGACTGACGGGACAGATCACCTTAAATAAGACGGACGGCTTGAGGAAGGAGTTTGATCTGGATATTATCAGTCTAAAAGAAGACGGCATGGAAAAGATCGGGGTTTGGAACACCAATCTGGGGCTTAATTTGACTGACAGCGTCCGAGACAAGACGACTAATGTTACAGACTCCATGGCCAACCGGACTCTAATCGTCACGACTATTCTGGAAAATCCGTACGTGATGTACAAAAAGTCTGATAAGCCTCTGTACGGAAATGACCGATTTGAGGGATACTGCCTGGACCTCCTGAAGGAGCTCTCCAATATCCTGGGCTTTTCCTACGAGGTTAAACTGGTGTCAGATGGGAAGTACGGTGCCCAGAACGATAAAGGCGAGTGGAACGGGATGGTCCGAGAGCTCATAGATCACGTGGCGGATCTGGCCGTGGCTCCTCTCACCATTACCTACGTGAGGGAGAAGGTGATAGACTTCTCCAAGCCTTTTATGACTCTCGGTATCTCCATCTTGTACCACAAGCCCAACGGCACCAACCCGGGGGTATTCTCCTTCCTCAACCCGCTGTCGCCCGATATCTGGATGTACGTTCTGCTGGCCTGCCTCGGCGTCAGCTGCGTGCTCTTCGTCATCGCCAGGTTCACTCCGTACGAATGGTACAACCCTCATCCCTGTAACCCGGACTCTGATGTGGTGGAGAATAATTTCACTCTGATTAACAGCGTGTGGTTCGGCGTTGGAGCTCTGATGCAGCAAGGTTCAGAGCTGATGCCCAAAGCTCTGTCTACCAGGATCGTTGGTGGGATCTGGTGGTTCTTCACCCTCATCATCATCTCCTCCTACACGGCTAACCTGGCTGCCTTCCTCACCGTGGAGAGGATGGACTCTCCCATCGACTCGGCCGATGACCTGGCCAAGCAGACCAAGATCGAGTATGGAGCCGTGAGGGATGGGTCCACCATGACCTTCTTCAAGaaGTCAAAGATTTCCACCTATGAGAAGATGTGGGCCTTCATGAGCAGCCGTAAGAACACGGCTCTGGTGAAGAACAACCGCGAGGGGATTCAGCGCGTGTTGACCACCGACTACGCCCTGCTGATGGAGTCCACCAGTATCGAGTACATCAGCCAGAGGAACTGTAACCTCACCCAGATCGGGGGGCTCATAGACTCAAAGGGATATGGAGTGGGGACCCCAATTGGTTCTCCATATCGGGATAAGGTGACCATAGCGATTCTGCAGCTGCAGGAAGAAGGGAAGCTGCACATGATGAAGGAGAAGTGGTGGAGAGGAAACGGCTGCCCGGAGGAGGACAGTAAAGAGGCCAGCGCTCTCGGCGTGGAGAACATTGGTGGAATTTTCATCGTTCTGGCTGCTGGGCTGGTGCTGTCCGTGTTTGTGGCTATTGGAGAGTTTGTGTACAAATCCCGGAAGAACCTGGATGTGGAGGAGGTCAGTGTGGGCCAGTGTGAGTGGCACAACAAGTTCTGACAGACGAAAAGTGTCCAGAGTCATGGACACTGCCACTTTAACACGGAACGTTCTGGTAAACGTTCTTCTTATCGTCATTCTGAACGTCTTTGGTTCTGGACAAACGTTCTGCGGATCAAATTCTGTGTGGAATTCAGTTTCGGCAGCTCACAAACTGCACTGGTTACCAGCACCAAGAACATCGCCGGACTGCTTTAGTTTGGGACGATGATTAAATAGCAGATTGAGCCTCTAAGAAATTAAGTATTATTTTCGTAGAGTAGTTTATATCCTTGTAGATTTCCTTTAGACGAGAGAAAAGTGAACGTTTTCTGGTTCAAACCCTTTTTCTGAGGTTTTGCTTTAAACATGAGGGTGGTTGTTTTGTGTTGACTAAGTGGAAATAAACCACCAAAcctataaatgaataaaattatttgATATGGTAAACATTACATActtaataatgtataatgttaaatgtataaattcaGTTGTAGGTGCTGATGAGGTTCAGGTAAGTTTTTGATTGAATTTTTCGTTAAATGATTTAATTCTAAAAGCATCAgttttgctctttttctcttatttcactcatttaGGGAATTTATTCTATCATATACTCAGTGATGTCTGCTTTTATATAGTTTGACGTTAAAGGAAATGCTTGTAAAACTTTTGTGAGTTTTGTGTGATATGTGAGATCAGAGcgtatgttttattttcatattttcatttatttatttggtctTCCCctatttctttattgtttttttctgtatggaagattttgtgagtgtgtgtgtaataagctGTGCTGCCATAAAACCTCTGTTCACCCTTTATTGTCCTCTATAATCTAGTAATTCAGATTCTGAATTTCGATTCCAATGTTTTCGCtttaatcagtttaaaaaagatatttgattaaattaacaaaatatcAGCTCTGTGTTACAGCTCACACACAGCCAGGTAATACTGATCACATTTCTGTTAAATAACAATAATCTGTTTTAGCGTAGCATCTGGTGCAGTAAAGCTGCAGAAAGTAATCTGAAAACACCACAAAGaataatgtggtaaaatcacagAGAGTAATGAGCTCATAATGAGCTCataaacagtacagttgtaaTGACAGAAAGCAATGTGAGAGTAAGAGAGTAACATCATGACACAGAATGTAATGGGCTTAAGAGCATAGCAAATGTTGTGATGTCATCACAGGGACTAATGTGGTAAGAGCTCATAAACGGTACAGTTGTAATGACAGAGAGTAATGTGATCTCATCACATACAGTAGTAATGTGATTACATCACAGAGAGTATTATAGTAATGCCACTGAGAGTAACACAGTTACATCACAGGGATTTATtgcattgttatttttattgaataaatTATGTTATAAGTATTTAA

Function

symbol description
grik1b Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Human ortholog(s) of this gene implicated in childhood absence epilepsy. Orthologous to human GRIK1 (glutamate ionotropic receptor kainate type subunit 1).

NR:

description
PREDICTED: glutamate receptor ionotropic, kainate 1 isoform X1

GO: NA

KEGG:

id description
K05201 GRIK1; glutamate receptor, ionotropic kainate 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670412.1 True 4443 mRNA 0.48 16 24181559 24216852
XM_022670416.1 False 4407 mRNA 0.48 15 24181559 24216852

Neighbor

gene id symbol gene type direction distance location
LOC103042333 NA coding upstream 1915 24177344 ~ 24179644 (+)
LOC103043067 LOC103043067,LOC108410425 coding upstream 5742 24173386 ~ 24175817 (+)
LOC107196838 LOC107196838,LOC108410423 coding upstream 10922 24166477 ~ 24170637 (+)
LOC111192631 NA coding upstream 20117 24157595 ~ 24161442 (+)
LOC103043883 NA coding upstream 24611 24155639 ~ 24156948 (+)
usp16 NA coding downstream 18999 24235851 ~ 24248495 (+)
farsb farsb,syfb,LOC107585746 coding downstream 37076 24253928 ~ 24261667 (+)
LOC103047234 NA coding downstream 66470 24283322 ~ 24287126 (+)
LOC111192659 NA coding downstream 75076 24291928 ~ 24296350 (+)
LOC103022207 NA coding downstream 94190 24311042 ~ 24326538 (+)
G6051 NA non-coding upstream 56197 24114947 ~ 24125362 (+)
G6049 NA non-coding upstream 72562 24107964 ~ 24108997 (+)
G5898 NA non-coding upstream 91077 24088651 ~ 24090482 (+)
G5913 NA non-coding upstream 100198 24080638 ~ 24081361 (+)
G5908 NA non-coding upstream 152490 24028653 ~ 24029069 (+)
LOC111192653 NA non-coding downstream 36303 24253155 ~ 24253912 (+)
LOC111192656 NA non-coding downstream 54698 24271550 ~ 24279468 (+)
G6167 NA non-coding downstream 167583 24384435 ~ 24384926 (+)
G6168 NA non-coding downstream 168251 24385103 ~ 24394430 (+)
G6189 NA non-coding downstream 208010 24424862 ~ 24429277 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 274085 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 334192 23839993 ~ 23847367 (+)
G5871 NA other upstream 347729 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 830253 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 1025193 23081391 ~ 23156366 (+)
LOC103027586 LOC108425877 other downstream 1195342 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 1823304 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 2702439 26919291 ~ 26931495 (+)

Expression


Co-expression Network