mettl16 (mettl16,LOC106581049)


Basic Information

Item Value
gene id mettl16
gene name mettl16,LOC106581049
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 25626335 ~ 25676963 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670722.1
TACAGTTTCTCTCAGTGCTCGGGGTGTGTCGTCACTCGCAGTGGACGGCGGCGCAGCTCTGTGACTGAACACAACGTTGGAGCAACGTGcgcttcagcagcagcagcagctcctgcagtctgaacacagaaTACACAGCTCCACACTGTTCACTAACAGCGCTACAAGAGAATAAACGGAATGGCGCTAAATAAATCAATGCATCCCCGAAACCGATACAAGGACAAGCCTCCAAACTTCGCGTATCTGGCCTCCAAATATCCTGATTTCCAGAAGCATGTTCAGACTAACCTGGTCGGCGGGGTGATGTTGAACTTTAAGGACCCTGAGGCGGTCCGTGCTCTGACCTGCACTCTGCTGAAAGAGGATTTTGGCCTGACGATAGAGATTCCTCTGGAGCGCCTCATCCCCACCGTCCCACTGCGCCTCAACTACATCCACTGGGTGGAGGACCTGACCGGGGGCCAGGGCAGCCCTCGCAGGGGCATCGACATCGGTACTGGTGCTTCCTGTATCTATCCCCTGCTGGGAGCATCAATGAATGGTTGGTACTTTCTCGCCACAGAGGTGGATGACATCTGTTATAATTACGCCAAGAAGAACGTTGAACAGAACAACATGGCAGACCTCattaaagtGGTGAAGGTGCCCCAGAAGACCTTGCTGATGGATGCATTAAAGGAGGAGTCTATTGTCTATGACTTCTGCATGTGTAATCCTCCTTTCTTTGCTAACCAATTAGAGGCTAAGGGGGTGAACTCCCGGAACTCCAGGAGACCCCCGCCCAGCTCTATTAACACGGGGGGAGTGACTGAGATCATGGCTGAAGGAGGTGAGCTGGAGTTTGTGAAAAGGATCATCCATGACAGTCTGCAGCTGAAGAAGAGGCTCAGGTGGTACAGCTGCATGCTGGGGAAGAAGTGCAGCCTGGCACCTTTGAAGGAGGAGCTGAGGAAACAAGGGGTCCCCAAAGTCACGCACACAGAGTTCTGTCAGGGGCGAACAATGCGCTGGGCCTTGGCCTGGAGCTTCTACGAGGACGTGAGTGTACCGTCTCCCCCCTGTAAGAAGCGTAAGCTGGAGAAGACTCGGAAGCCGCTGTCCTTCACTGTTCCAGGACCCACTGCAGTTGAGCTACACAGCCAGATCTCCAGCATCAGCTCCACACCAACACAGACCCCCTCAGAGAGCATCACTGTCTGGCTGGAGAAGATCCTCACAGACCTGAAGgTGTTACACAAGCGTGTGCCCTGCAGCGAGAATGAGCTGAGCCTCTTCCTCACAGCTGTGGAGAACACCTGGATCCACGCCCGTCAGAAACGAAGGGAGCGTGGCCGTCAGCTACGCGAGGTGCCCAGAGCACAGCCCCAGACTGCCCCCAGCCTGACTCCCGACACATCTTCAgacccagctccagctccagaccTGGTCCCGGACCCGGAACTGGCCACTGACACTGCTCCGGCAGGGACAGCAGAAGACAGCACTGAACCCTACAGCGATGGAAAAGAAACTAAAGAACAGAAGGACACTGAGAGTGGTACAGATATAATAATGGAGGCATCCAACATAGAGGAGCCAAAACAGGAATCCAGTTCCCCACAGGACCCTCCAAGCCCCAGCACAGCCCATCACTTCCTCTTTAAATGCCTGGTAAATGTGAAAGCAGAAGAAACTGACGTTTCTGTGGAGATGCACTGGGTGGAAGGGCAGAATAAAGACCTGATGAACCAGCTGTGCACATGCCTGAAAAACACACTCTTTCGCCAGGTCACCAAACCCACATCACCCTGATGTAGTCCTCCAGTCACATCCTCCCCTGTGCCGGCGGTATGCAGTAGAAGAACTACTGCATACTGACTCTAAAGAGAAGCCCACTCTCTGAGCTATGAGCCATACTTAAGTTTTGTAAGTGTGATTAAGTGGCTGAGACAGCAGTTTTGATTGAGTTTATTAGTGATTGATTGGCTTTATTACGtttgttataaatgttttaattatgtcTGTTGTTCAGCATATTTCtttcattaataattaaacataattcaaAATCTA
>XM_022670724.1
GTACAGTTTCTCTCAGTGCTCGGGGTGTGTCGTCACTCGCAGTGGACGGCGGCGCAGCTCTGTGACTGAACACAACGTTGGAGCAACGTGcgcttcagcagcagcagcagctcctgcagtctgaacacagaaTACACAGCTCCACACTGTTCACTAACAGCGCTACAAGAGAATAAACGGAATGGCGCTAAATAAATCAATGCATCCCCGAAACCGATACAAGGACAAGCCTCCAAACTTCGCGTATCTGGCCTCCAAATATCCTGATTTCCAGAAGCATGTTCAGACTAACCTGGTCGGCGGGGTGATGTTGAACTTTAAGGACCCTGAGGCGGTCCGTGCTCTGACCTGCACTCTGCTGAAAGAGGATTTTGGCCTGACGATAGAGATTCCTCTGGAGCGCCTCATCCCCACCGTCCCACTGCGCCTCAACTACATCCACTGGGTGGAGGACCTGACCGGGGGCCAGGGCAGCCCTCGCAGGGGCATCGACATCGtGGTGAAGGTGCCCCAGAAGACCTTGCTGATGGATGCATTAAAGGAGGAGTCTATTGTCTATGACTTCTGCATGTGTAATCCTCCTTTCTTTGCTAACCAATTAGAGGCTAAGGGGGTGAACTCCCGGAACTCCAGGAGACCCCCGCCCAGCTCTATTAACACGGGGGGAGTGACTGAGATCATGGCTGAAGGAGGTGAGCTGGAGTTTGTGAAAAGGATCATCCATGACAGTCTGCAGCTGAAGAAGAGGCTCAGGTGGTACAGCTGCATGCTGGGGAAGAAGTGCAGCCTGGCACCTTTGAAGGAGGAGCTGAGGAAACAAGGGGTCCCCAAAGTCACGCACACAGAGTTCTGTCAGGGGCGAACAATGCGCTGGGCCTTGGCCTGGAGCTTCTACGAGGACGTGAGTGTACCGTCTCCCCCCTGTAAGAAGCGTAAGCTGGAGAAGACTCGGAAGCCGCTGTCCTTCACTGTTCCAGGACCCACTGCAGTTGAGCTACACAGCCAGATCTCCAGCATCAGCTCCACACCAACACAGACCCCCTCAGAGAGCATCACTGTCTGGCTGGAGAAGATCCTCACAGACCTGAAGgTGTTACACAAGCGTGTGCCCTGCAGCGAGAATGAGCTGAGCCTCTTCCTCACAGCTGTGGAGAACACCTGGATCCACGCCCGTCAGAAACGAAGGGAGCGTGGCCGTCAGCTACGCGAGGTGCCCAGAGCACAGCCCCAGACTGCCCCCAGCCTGACTCCCGACACATCTTCAgacccagctccagctccagaccTGGTCCCGGACCCGGAACTGGCCACTGACACTGCTCCGGCAGGGACAGCAGAAGACAGCACTGAACCCTACAGCGATGGAAAAGAAACTAAAGAACAGAAGGACACTGAGAGTGGTACAGATATAATAATGGAGGCATCCAACATAGAGGAGCCAAAACAGGAATCCAGTTCCCCACAGGACCCTCCAAGCCCCAGCACAGCCCATCACTTCCTCTTTAAATGCCTGGTAAATGTGAAAGCAGAAGAAACTGACGTTTCTGTGGAGATGCACTGGGTGGAAGGGCAGAATAAAGACCTGATGAACCAGCTGTGCACATGCCTGAAAAACACACTCTTTCGCCAGGTCACCAAACCCACATCACCCTGATGTAGTCCTCCAGTCACATCCTCCCCTGTGCCGGCGGTATGCAGTAGAAGAACTACTGCATACTGACTCTAAAGAGAAGCCCACTCTCTGAGCTATGAGCCATACTTAAGTTTTGTAAGTGTGATTAAGTGGCTGAGACAGCAGTTTTGATTGAGTTTATTAGTGATTGATTGGCTTTATTACGtttgttataaatgttttaattatgtcTGTTGTTCAGCATATTTCtttcattaataattaaacataattcaaAATCTA

Function

symbol description
mettl16 Predicted to enable RNA binding activity and RNA methyltransferase activity. Predicted to be involved in RNA metabolic process and regulation of mRNA metabolic process. Predicted to act upstream of or within methylation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human METTL16 (methyltransferase 16, N6-methyladenosine).

NR:

description
PREDICTED: methyltransferase-like protein 16

GO: NA

KEGG:

id description
K11393 METTL16, METT10D; U6 snRNA m6A methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670722.1 True 2055 mRNA 0.52 10 25626336 25676963
XM_022670724.1 False 1915 mRNA 0.52 9 25626335 25676963

Neighbor

gene id symbol gene type direction distance location
LOC103030333 lis1a,pafah1b1,LOC103030333,LOC102225619,LOC103155189 coding upstream 1531 25586779 ~ 25624804 (+)
cluh cluh,cluha,LOC107664929 coding upstream 42354 25551222 ~ 25583981 (+)
ccdc92b LOC108425871 coding upstream 77940 25530149 ~ 25548395 (+)
LOC103028751 tlcd2,LOC103028751,LOC107585588,LOC107664963,LOC107743747,LOC107592621,LOC107685052,LOC107744789 coding upstream 101880 25482105 ~ 25524455 (+)
LOC103027284 NA coding upstream 228801 25391010 ~ 25397534 (+)
mnt mnt coding downstream 4113 25681076 ~ 25713432 (+)
vps53 vps53,LOC107744780,LOC107664930,LOC107743667 coding downstream 49206 25726169 ~ 25758766 (+)
rflnb LOC108425865,LOC107744779,LOC107664902 coding downstream 81972 25758935 ~ 25762483 (+)
exo5 NA coding downstream 87525 25764488 ~ 25774371 (+)
LOC103033293 NA coding downstream 138315 25815278 ~ 25826749 (+)
G6464 NA non-coding upstream 76650 25548738 ~ 25549685 (+)
G6446 NA non-coding upstream 122750 25503002 ~ 25503585 (+)
G6445 NA non-coding upstream 125150 25490214 ~ 25501185 (+)
G6441 LOC108425873 non-coding upstream 152149 25470677 ~ 25474186 (+)
G6377 tsr1,LOC107685058,LOC107592627,LOC107743656 non-coding upstream 305607 25319508 ~ 25320728 (+)
G6514 NA non-coding downstream 119659 25796622 ~ 25797186 (+)
G6516 NA non-coding downstream 121955 25798918 ~ 25799741 (+)
LOC111192696 NA non-coding downstream 187423 25864386 ~ 25888817 (+)
G6567 gosr1,LOC107743674,LOC107690419 non-coding downstream 283518 25960481 ~ 25997692 (+)
G6574 NA non-coding downstream 322254 25999217 ~ 26002978 (+)
LOC103027586 LOC108425877 other upstream 197984 25412194 ~ 25428351 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 1718861 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 1778968 23839993 ~ 23847367 (+)
G5871 NA other upstream 1792505 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 2275029 23312512 ~ 23351306 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 363193 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 1242328 26919291 ~ 26931495 (+)

Expression


Co-expression Network