LOC111192950 (LOC108432968)


Basic Information

Item Value
gene id LOC111192950
gene name LOC108432968
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 8676662 ~ 8697582 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671326.1
ATGGTTTTGGACGAGTTGGAGAGCAGAGTGAAGCAGTGGGGAGAGATCATCAACAGGAAGATCTACTTTCCTCCTGAGCTGATCATAGCCATCCAGGAGAGCAACATGGTGATGGTGAAAAGCCTGCTCTGTGCAGAGGAGGGCTTTATTCACCAGCTGGTGGATTCTGAGGAACGCCAGTGGAGGGAGGCTCTGAACCTCTCCATCAGAATGGGCAGCGAGGAGACCATGGCTGCGCTTCTGAGGGGCATCAAGTTTGATTTCCGGCAGATCCACGAAGCCCTGCTGGTGGCGGTGGATACTAATCAACCAAGGGTGGTCAAGCTTCTTCTGGACCGCCTGGACCAGGAGAAAGGTAATAAAATAGACGTACGCTCCTTCTCCACCGCCATCTTTGACCGCTCCATCGACGCCTCGCAGTTTGCCCCTGGAGTGACCCCTCTCACGCTGGCCTGTCAGGAAGATTTGTACGAGATCGTGACCATGCTCACTCAGAGAGGCCACATCATCTCCCCACCTCACGCCATCTCCTGCAGCTGTTTGGAATGCAGGAACGCTCGGCAGTACGACCTGCTCAAGTTCTCACTCTCTCGCATCAACACGTACCGAGGCATCGCCAGCCGCGCATACCTGTCAATCACCTCCGAGGATGCCATCCTCAGTGCCTTCCACCTGAGCTCCGAGATGCGCAAGCTGTCCAAGAAGGAGCCGGAATTTAAACCGCAGTACCTGGCTCTGGAGCAGGTGTGTCAGGAGTACGCTGTGGAGCTGCTGGGAATGTGCCGGAACCAGAGCGAGGTCTCCACTCTGCTGAACTATGGTGAAGATGTCAGTGATGAGGAGCTAGATGAGCAGACGTTTGAGGAGGGTATACCCAACCTGGCACTTATCCGTCTGGCTATAACCTACAACCAAAAACAGTTTGTGACTCATCCCATCTGCCAGCAAGTGCTGTCCTCCATTTGGTGTGGCAGTCTCTCAGGCTGGAGGGGCAGCAACACATCGTGGAAACTGCTGGTGTCTCTGGGGATCTTTGTGAGCATGCCATTGCTGTGCTTCATCTACTGGATTGCTCCAAAATCCAAGATCGGCAGGACTCTGAAGATTCCAGTGATCAAGTTTTTGCTGCACTCTGCTTCCTACCTGTGGTTCCTGATTATCCTGCTAACGGAGTCAATCTTCATGGAAATCTGGCGAGATGACATTGCTTCCCGCTCACAAAACCTTCTCCACAACTCTCTTCACATGATCTGGGTTGTTGGTTTCTTCTGGTTTGAGTGTAAGGAGGTGTGGATTGAGGGACTGAAAACCTACTTACTGGACTGGTGGAACATTCTGGATATGCTGGTGCTCAGCATGTACCTGGCCTCCTTCACACTGCGCATTTTAATTGTGCTAAAAGGCCATTTCCTGTGCCAAGATCCCAGCGCTGAAGACCTGTGTGACTACTTCACAAACACAGCACGAGAAAACTGGAGACAAGAAGACCCTCAGCTGATTGCTGAAATGCTATTTGCTGTGACCAGCATGCTGAGCTTCACACGTCTGGCCTACATCCTACCAGCTCACGAATTCCTGGGAACCCTACAGATATCCATTGGTAAAATGATCGATGATATGATGAGatttgtttttatCCTGATGATCATCGGCACTGCTTTCCTGTGTGGGATGCACAACATATACGCTCCATATGTCAGCTCTCCACTTGGCAGGCTTAATGAGACCTTTAACTTTCTCTTCTGGACTATGTTTGGAGTGTTCAATCAGGAAAAAGTGGACATGCCAGACCACGTTATGGCGGAGTTTGTGGGCAGAGTTCTTTACGGGATTTTCACTCTGATCATCGTCATTGTGCTGCTCAACATGCTCATCGCCATGATAACCAATTCATTTCAAAAGATTGAGaatgaTGCCGACGTTGAATGGAAGTTTGCGCGTTCCAAGCTCTACCTCAGCTTTTTCAGAGAGGGCCTCACCATGCCTGTTCCTTTCAATATCATTCCTTCCCCCAAAGCATTATTCTATGGAATAAGAAATATCTTTTCAAGAAATACTCTGACCAGCACTGATCACCCTCCAGTCACATCTGTGTCTGGCAGTACCCTGAACCAGAGTGAAGGTCAGGGTGAAGGCAGAGTGCCATATCGCCTGCAGGTTATCAAGGTTTTAGTGCAGCGCTACATTGCAGCAGCACGTCAAGAGTTTGAGGACACCAAGAACAACGATGTGGGCCACAGAATCACAGAACTGAATAAAGTGGTGGGAAGACTGGACATAGAGGTGATGAAGGTGGTTGAGAATCTCCACTGCAGACGTGGAGCATCCAGACCAGAGCGTGAGACCAGTGCCATTCTGAACGACTACATCATGAGGGCCAAGAACCATTTCCACAACTTTGATAAGAAAGAGGCTTCAGGAAGCCGAGGTGCTGGACTGCAGGTTCTGTTCCACCACAGTGAAgaacagaaggaaaaaaaagaaagcagataATGGGAGTGTCGGAGTAAACAACTGCCCATAATATTGCTATATTACACTAGTGTTAATAGAGTAAGCAATAAGTAAAGCACATAGCAGCTTTTCATTGCATGGCATCCATTGTACACCTTTACATTGACTTTATTTAGCATCTCTGTACTTTGCAcggtcatgggatagcagtttTCTCAGGAGttggcttgggaacacccaaacatgtatacgttgtgaggtgCCATCTTGTGAGTGAGTCTGAGCATTTGTCGCCATGTTCAGGGCAAGGCATGGAAATGTGAATTATTGGACATGATGTAAGGCCTGATATTGGATGCCAGATGGACCCTTAAGagaagacatttaaaaatattgtacaaTCTCTGCAATAACTTTGTTGGAAATCTCAATATTGAagtaaaatgtgaaaacaataaACTTGTTAAATTCA

Function

NR:

description
PREDICTED: short transient receptor potential channel 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671326.1 True 2926 mRNA 0.48 14 8676662 8697582

Neighbor

gene id symbol gene type direction distance location
LOC103026472 LOC108432989,LOC108277724 coding upstream 896802 7317013 ~ 7779860 (+)
LOC111192949 NA coding upstream 1403355 7270865 ~ 7273307 (+)
LOC103038844 NA coding upstream 1474096 7189480 ~ 7202566 (+)
LOC103039155 NA coding upstream 1488089 7181782 ~ 7188573 (+)
LOC111194639 NA coding upstream 1508862 7162246 ~ 7167800 (+)
LOC103023232 NA coding downstream 109585 8807167 ~ 8816687 (+)
LOC103027547 NA coding downstream 113666 8811248 ~ 8813220 (+)
LOC111194918 NA coding downstream 124908 8822490 ~ 8826360 (+)
LOC103022922 LOC103022922,LOC108277434 coding downstream 139790 8837372 ~ 8839379 (+)
LOC103022607 chrna10a,LOC108432977,LOC107570043,LOC446029,LOC106567906 coding downstream 149258 8846840 ~ 8854201 (+)
G2328 NA non-coding upstream 45815 8629797 ~ 8630847 (+)
G2326 NA non-coding upstream 48751 8627648 ~ 8627911 (+)
G2174 NA non-coding upstream 797136 7877733 ~ 7879526 (+)
G2125 NA non-coding upstream 930750 7708197 ~ 7745912 (+)
G2124 NA non-coding upstream 1053401 7622811 ~ 7623261 (+)
G2362 stim1,LOC108277929,LOC108432992,LOC101465674,LOC100691215,LOC102214188 non-coding downstream 45434 8743016 ~ 8787010 (+)
G2393 NA non-coding downstream 159771 8857353 ~ 8862747 (+)
G2400 nos2,LOC108432969 non-coding downstream 178270 8875852 ~ 8882592 (+)
G2443 NA non-coding downstream 476754 9174336 ~ 9174756 (+)
G2453 NA non-coding downstream 618102 9315684 ~ 9316134 (+)
G2304 NA other upstream 116184 8560066 ~ 8560478 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 2122212 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 2261868 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 2973479 5681026 ~ 5703183 (+)
LOC111192942 NA other upstream 3399674 5250484 ~ 5276988 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 35141 8732723 ~ 8734952 (+)
lyrm9 lyrm9,LOC102789908 other downstream 246879 8944461 ~ 8957392 (+)
G2509 NA other downstream 934283 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 936511 9634093 ~ 9743491 (+)
LOC103029949 slc46a1 other downstream 2560864 11258446 ~ 11279177 (+)

Expression


Co-expression Network