LOC103022607 (chrna10a,LOC108432977,LOC107570043,LOC446029,LOC106567906)


Basic Information

Item Value
gene id LOC103022607
gene name chrna10a,LOC108432977,LOC107570043,LOC446029,LOC106567906
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 8846840 ~ 8854201 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671338.1
ATGCTGTCAGCCAGTATCCGCCCCTCTGCAGGCTGTGCCTGCTGGGGAGCTCAGGGGAAGTATGCACAGAGGCTGCTGAACGACCTGTTCAGAAACTACACCAGTGCAATGAGACCAGTGGAGAACACCAACGATATCTTAAACGTCACACTACAGATTACACTCTCCCAAATCATTGGCATGGATGAGCGTAACCAGATTCTGACAGCGTATTTGTGGATACGGCAAGTGTGGACCGATGCATATCTGACCTGGAATAAAGATGATTATGATGGACTCGATACCATCCGCATACCTGGTAGTTATGTATGGAGACCTGATATTGTCCTTTATAACAGTGCGGACGACCATTTTACAGGCACCATGGACACCAATGTAGTTATCCGCTATGACGGACAGATCATGTGGGACTCTCCAATCATCACCAAAAGCTCCTGCAAAGTAGACGTGTCATTTTTCCCTTTTGACGCCCAGCAGTGCCGCCTCACCTACGGCTCTTGGACCTATAACGGCAAACAGCTGGACATTCTCAATGCCTTGGAGAGTGCAGACCTGGCTGACCTGGTGGATAATGTGGAGTGGGAGGTGCTGGGGATGCCAGCAAAAAAGAACGTAATCCAGTATGGCTGCTGTGCTGATCCCTACCCGGATGTGACCTACACACTAAAGCTGAAGAGAAGGGCCTCCTTTTATGTGTTCAATCTGCTGATTCCTTGCGTCATGATCTCCTTCCTCGCACCGCTGGGCTTCTACCTGCCTGCTGACTCTGGAGAGAAGGTGTCTCTGGGAGTCACTGTGATGTTGGCACTGACCGTTTTTCAGCTTCTTGTGGCTGAGATTATGCCCCCCTCTGAGAATGTGCCACTTATAGGGAAATATTACATAGCCACCATGACCATGATCACTGCCTCCACTGCTCTCACCATCTTCATCATGAACATCCATCACTGTGGCCCAGACGCAAAACCTGTGCCTGAATGGGCTAAGACGTTCATCCTGCAGTACCTGGCCAGGATCTGCTTCGTCTATGAAGTCGGAGAGAACTGCATGACCCCACAGCCCGAGAAACCGGACCCCCCACCTCAGACACAGCCACAGCATATGAACGGCCGAGCAGGCAAGGACGACCTCGTCTTCAAATTCGACAGAGGTCAAGACGGTATTCCTTTAAAGCCTTCAGAGGAAAAAGGGGACATGTCTCAGATTCTGTCCCCAGCCTGTTCAATAGGGCCAAATCCCACCAATCAATACAGCGTCTGGAAGAACGGAGTGTTCCTGAGTTTGGACGGTGGGGATGGTGTGTCCACACCAGGTGTAGGAGTAAAGGACAGGGACCGGTCTGGAGGACAGGAGGATGGAGGTAGGCAGTGTGGTGAGGAAAGGATGCAGAGCATCACTGATCAAGAGCATAATTTCAGGAACATTGAGTATATTGCTAATTGTTATCGAGACCAGAGAGCCACACAGAAGAGAACAGGAGAGTGGAAGAAGGTGGCCAAGGTGTTGGATCGCTTCTTTATGTGGATTTTTTTCATCATGGTGTTTTTCATGAGTCTGCTCATTATGTGCAAGGCCATCTGA

Function

symbol description
chrna10a Predicted to enable acetylcholine-gated cation-selective channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Orthologous to human CHRNA10 (cholinergic receptor nicotinic alpha 10 subunit) and CHRNA9 (cholinergic receptor nicotinic alpha 9 subunit).

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit alpha-10-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K05312 CHRNN; nicotinic acetylcholine receptor, invertebrate

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671338.1 True 1581 mRNA 0.50 5 8846840 8854201

Neighbor

gene id symbol gene type direction distance location
LOC103022922 LOC103022922,LOC108277434 coding upstream 7461 8837372 ~ 8839379 (+)
LOC111194918 NA coding upstream 20480 8822490 ~ 8826360 (+)
LOC103023232 NA coding upstream 30153 8807167 ~ 8816687 (+)
LOC103027547 NA coding upstream 33620 8811248 ~ 8813220 (+)
LOC111192950 LOC108432968 coding upstream 149258 8676662 ~ 8697582 (+)
LOC111192952 NA coding downstream 85438 8939639 ~ 8940410 (+)
LOC103038411 NA coding downstream 300188 9154389 ~ 9156240 (+)
LOC103045140 wscd1,LOC108432998,LOC107756514,LOC107682602,LOC107666180 coding downstream 553898 9408099 ~ 9463585 (+)
LOC103038783 LOC108432999,LOC108278263,LOC106613073,LOC107589733,LOC107714181,LOC106581277,LOC105901427,LOC107666202 coding downstream 718319 9572520 ~ 9600832 (+)
LOC111192769 NA coding downstream 902635 9756836 ~ 9759186 (+)
G2362 stim1,LOC108277929,LOC108432992,LOC101465674,LOC100691215,LOC102214188 non-coding upstream 59830 8743016 ~ 8787010 (+)
G2328 NA non-coding upstream 215993 8629797 ~ 8630847 (+)
G2326 NA non-coding upstream 218929 8627648 ~ 8627911 (+)
G2174 NA non-coding upstream 967314 7877733 ~ 7879526 (+)
G2125 NA non-coding upstream 1100928 7708197 ~ 7745912 (+)
G2393 NA non-coding downstream 3152 8857353 ~ 8862747 (+)
G2400 nos2,LOC108432969 non-coding downstream 21651 8875852 ~ 8882592 (+)
G2443 NA non-coding downstream 320135 9174336 ~ 9174756 (+)
G2453 NA non-coding downstream 461483 9315684 ~ 9316134 (+)
LOC111195023 NA non-coding downstream 532067 9386268 ~ 9394588 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 111888 8732723 ~ 8734952 (+)
G2304 NA other upstream 286362 8560066 ~ 8560478 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 2292390 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 2432046 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 3143657 5681026 ~ 5703183 (+)
lyrm9 lyrm9,LOC102789908 other downstream 90260 8944461 ~ 8957392 (+)
G2509 NA other downstream 777664 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 779892 9634093 ~ 9743491 (+)
LOC103029949 slc46a1 other downstream 2404245 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 2433930 11288131 ~ 11288846 (+)

Expression


Co-expression Network