LOC103028185


Basic Information

Item Value
gene id LOC103028185
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 15733287 ~ 15762061 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671384.1
TGAAGGGCTTGTTGTTGACAATGTTGTTAATAATtgatgtgatttatttacagaGACCTTTTTTTGGCTGACTGTTCTTTTAAAAAGCCAGCTGAGTCTGTGATGATAAAACATTCACTATGGCTGTTGGGACTCATGTAAGCCAAAGGCTACTATTAGCCTGCTTCCTCATTCTCTCTGCCTATGGACAGACCTCAGGACCtgttTTCATGGTGACGTTTCCTGCGGTGATTGAGTCTGGCTCTGAGGCTAAACTGTGTGTGAGTCTCCTGAAGCCGAATGAAACTCTACAACTCACTGTTTACCTGCTTTACAACAACCAGAACAGAACACTTCTACAGGAGAGAGTGGCGGAAGAATTTCACCGCTGCTCTCAGTTTAAGGCTCCTCGGGTTGAAGCTCAGTCAGTGCAACAGATCAGAGTAGAGGTCAAAGGTAAACATTTTCTGATGGCAGAAACAAGAAAAGTTATGTTTAAATCCTACAACCCGCTGACATTCATCCAGACTGATAAACCAATCTACAATCCAGGCCAAACAGTGAATTTCAGAGTTGTCACCATGGACTCTAAACTTATCCCCCTTGAACAAAAGTACAGCACACTGGCTCTTGAGGATAATAATGGTAACAGGATCGGGCAGTGGACGAATGTTTCCTCGACAGACCTGATATTGGAGCTTTCTCACCAGCTGAACTCTGAGGCTCCTGAGGGCCAGTACACACTAAAGGCTATTACTGGGGATAGGTCGATTACACACCActttacagtgaaaaaatatgTGTTGCCCAGGTTTGAGATTACAGTAAACGCTCCAAAGGAACACAGTGTTGGTGAAGAGGAACTGAAGATAGACGTTTGTGGAAAGTACACGTATGGACAGCCAGTTTCTGGCAAAGCACTCATTCTGGTGTGCCGACCATTTAAATCAAGAAGTCCCATTTATAGCATACCATTTATAGACCCTCAGACTCTACTATGTCGCACTAAAACGCTGGAGATGAGTGATGGTGGCTGTGTTTCTGCTACCTTCACTGTGTCTACTTTCACAAACACAGAGCTAGAACATCATTTAAAAGATTTTCTTGATGCTAAAGTTACAGTGACAGAGGAAGGGACAGATATTTCCATGGTGAAATCTGAAACTATAAGTCTCACTTATCAGATTGGTAAAGTTGAATTACTTGACTTACCTAAATACTTTGAATATGGGACATATATAGATGGAAAGATCAAAGTTTTAACCTTCAGTGGGAAACCTGTTCCTCACAGGAGTGTCTATCTTTTTAAACATCAAATGTGGCAATGGAATGAACATCTTACTCTCACCACTGATATTAATGGATTGGCCAACTTCACAATTAAAGTGCCTGATCAACCTGCAACAGAAATTTCACTGATGGCAAGTGTCTATAGAACTCACAGATACCATAGATCCAAAGAACAATACTTTACATCCAGTAATGCAAGTATACCACTCCTCCAACCTGCTACACCTTACAGTCCAGTGAGCAGTGAATTATCAATAGAGGACTTAGAAGACCCAATCAAGTGTGACTCTAATGTTTCCATAAGCGTTAAGTACTACATTATTGGAGAGAAGACTAAGAATTACAGGACTGATCTCATTTACATGGTTGTCTCCAGAGGAGTCATAGTACATCACGGCTATGAAAAGGTTGAAGTGAAAGAGTCCAGAAGACTCATAGAGGGAAGAGTCTCCTTCAAACTGTCTGTGGTTCTTGAGATGGCTCCTGTAGTGCAGGTTCTGGTGTATGGAGTACTGCCCAGTGAGAACGTCATTGCTGCTAGCAAGAATTTTAACGTGGAAAAATGTTTTAGAAACAAGGTATCGCTGCAGTTCTCTCCTACTGAAGCAGTTCCTGGTGAGGAAAACTCTCTCCAGCTCTCAGCTCTGCCTGGTTCACTGTGTGCTCTCAGTGCTGTGGATCAGAGTGTGTTCATCTTGGAGCCAGGAAAACGCCTGAGTGCTGACACGATGATTGATTTGTTGCCTGTAAAatcagtttctgattttgcCAGTGGTGTTGAAGATGATCCGAAGTGTCATCAAGAGCAGAATGCACAAGGAGAGCGTGTGTACACTACTGTGAAGAGTGTGGGGTTGAAGATTGCAACTAATTTGGATGTGAACTCTGCATGTgaatatagtttttattatgattatggtatgtacagatttttgttttactttatttatatgtcGCCGCAGGTGTCATGTCCTGTCTGTTCTCTTGTCTGTATGTTCTCATGTGACccggctcctctgtgtttcattcccagtgtttttccaCGGGataATTTTGCATATATCGTACCTACTTCCCTTGATTATGGTGTGGCACGCGTTGCAACTGTGACTGAATCTCATGTAGAAGAAGAGGAACAGCCCATCAATCCCAGTGAGACGGTTCGCAAATTCTTTCCAGAAACGTGGATATGGCAACTTGTTAAAGTCGGTGATTCTGGATCAGCTCAGGTTCCTGTCACTGTTCCTGACACCATCACCACTTGGGAGATGGACACTTTCTGTCTGTCCTCTAGAGGTGTGGGAGTAGCTCCTGCTGCTCAGCTTCGTGTCTTCCAGCCCTTCTTCCTGGAGCTCTCTCTGCCCTACTCCATCATCCGGGGAGAAGAGTTTGAGCTGAAGGCCACTGTCTTCAACTATCTCTCCAAGTGCATTATGGTTAAAGTGACTCCAGCTCCTTCCTCAGACTACACTCTAAAAGCCTCCTCCTCTGATGAGCAGTATTCATCCTGTCTGTGTGCAAATGGTAGAAAGACCTTCAGATGGACTCTCGTGCCCTCTGTGCTCGGGGTCTTGAACGTGACGGTCAGTGCTGCAGCAGAACCGTCACAGACTGTGTGTAACAATGAGATTGTGAGTGTTCCTGACAGAGGACGCATTGACACAGTCACACGAAGTCTGCTGGTACAGGCTGAAGGCACTGAACAGACCAAGAGCCAGAGTTGGTTGCTTTGTCCACAGGGAAACAGTGTTTCAGAGGAGCTGACTCTTCCTGAAGACGTGATAGAGGGATCAGCACGAGCTTCTGTTTCAGTGCTTGGAGACATTCTGGGCCGTGCACTAAAGAATATTGATGGGTTGTTGAAGATGCCGTATGGCTGTGGAGAACAAAACATTGCTCTCCTCTCTCCCAATATCTACATTCTTCAGTACCTGGAAAGCACTGAACAGCTGACCCCAGCCATCCGAGAGAAAGCTACTGGCTTCCTTAAGAGCGGATATCAGCGGCAACTGAACTACAAGCATATCACTGGAGGGTACAGTACATTTGGCACAGGAGAGGAAAACACATGGTTAACTGCTTTTGTAATGAGGACTTTTGGGAAAGCACAGCGGTACATCTTCATTGATCCAGAGAACATTAACAGTGCAAAGAAATGGCTGATCAGTAAACAGAAATCAAACGGCTGTTTTGTTAGACAGGGAAGTCTGTTCAACAACAGAATGAAGGGTGGTGTAAGTGATGATGTGACCATGACTGCTTACATCACTGCCTCATTGCTGGAACTGGGCCAAACAGCTGAGgatCCTGTTGTGAGGAAAGGCTTATCATGTTTAAAGCTCTTTGTTAATAGCAGGAAAACCACTTATACTACTGCCCTGCTGGCCTACACTTTTACCCTGGCTGGAGAGAATGAAATCAGAGGGCAGCTGCTAAAGCAACTGGATAGAAGTGCCATTTCAGGAGATGGTCGTCTTCACTGGTCTCAGTCTGCATCTGAAGACTCTGACTCCTTGTCAGTGGAGATCAGCTCCTACGTGTTGTTAGCTGTTCTCTCTACAGATAAACTCTCTGCTGCTGATTTGGGCTATGCTAACAGGATTGTCAGCTGGCTGGTGAGGCAGCAGAATCCCTATGGAGGCTTCTCCTCCACACAGGACACAGTGGTGGCCCTCCAGGCTCTGGCTCTGTACGCCACCAAAGTGTACAGCCCAGATGGCTCCAGCACAGTAACTGTGCAGTCAGCAAATAAAGAGACTCACAGCTTTGAAGTGAATCAGAACAACAAGTTACTGTACCAGGAGAAATCCCTACAAAATGTTCCTGGAGAATACAGTGTTATAGTGAATGGCTCCAACTGTGTGTCTGTGCAGATGGCACTTTTCTACAATATCCCTACACCTACTGACACCAGTACATTGAGCGTTAAGGCTAAGACTGAaggagactgtaaaaaaaatccccaaacTTTATCCATCAACTTCACAGTCAAATATATTGGGCTACTGGACAGCACTAATATGGTCATAGTGGACATAAAGATCTTATCAGGATTCACAGCAGACCCTAGCACTCTAAAAGGCATGCCACTTGTGGAACGTGTAGATTCTAAAGATGACCACGTTATCATGTACATAAATAAGATCCTAAAGAACAAACCTCTGAATTATCAGCTACATATTAAGCAATTGCTTCCAGTCAAAAACCTCAAACCTGCCGTGATCAAAGTTTATGATTACTACCAACCAAATGACCAGTCTGAGACGGAGTACTCCTCTCTCTGTGCATAAGCCTACACCTCTGCAGCTTCACAGACACAGAAAGGGTTTTACTCTGTGTTGATATTGATTAATCAATtgaaataaatgtgatttgCAAGCAA

Function

GO: NA

KEGG:

id description
K03910 A2M; alpha-2-macroglobulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671384.1 True 4651 mRNA 0.44 35 15733287 15762061

Neighbor

gene id symbol gene type direction distance location
LOC103029544 NA coding upstream 3976 15709480 ~ 15729311 (+)
LOC103023867 msi2b,msi2,LOC108425902,LOC107587484,LOC107682662,LOC108277875,LOC108435815,LOC105028669,LOC106603292 coding upstream 115500 15211657 ~ 15617787 (+)
akap1 akap1b,akap1 coding upstream 546892 15167460 ~ 15186395 (+)
LOC103021895 NA coding upstream 667070 15051474 ~ 15066217 (+)
LOC103047124 ksr1 coding upstream 699628 14972989 ~ 15033659 (+)
LOC103027482 NA coding downstream 128144 15890205 ~ 15892830 (+)
LOC103026903 aldh3a2a,LOC108425811,LOC107586255,LOC107729125,LOC107662794,LOC108277491 coding downstream 172447 15934508 ~ 15940392 (+)
LOC103027191 LOC108425812,LOC108277490 coding downstream 183667 15945728 ~ 15952683 (+)
LOC103025893 tpst1,LOC108425813,LOC108277496,LOC107662793,LOC107657564 coding downstream 245604 16007665 ~ 16069129 (+)
timm50 timm50,LOC107586258,LOC107729126,LOC107728222,LOC107662791 coding downstream 397697 16159758 ~ 16192568 (+)
LOC111192856 NA non-coding upstream 68939 15660210 ~ 15664348 (+)
LOC111192011 NA non-coding upstream 77966 15639346 ~ 15655321 (+)
G3808 NA non-coding upstream 114116 15617118 ~ 15619171 (+)
G3855 NA non-coding upstream 196044 15536490 ~ 15537243 (+)
G3840 NA non-coding upstream 357644 15374631 ~ 15375643 (+)
G3894 NA non-coding downstream 1183 15763244 ~ 15772504 (+)
G3917 NA non-coding downstream 124053 15886114 ~ 15888367 (+)
G4120 NA non-coding downstream 394451 16156512 ~ 16157533 (+)
G4158 supt5h,LOC107586261 non-coding downstream 531450 16293511 ~ 16310645 (+)
G4164 NA non-coding downstream 549880 16311941 ~ 16312669 (+)
LOC103023550 nf1 other upstream 570331 15072840 ~ 15162956 (+)
G3790 NA other upstream 694373 15038555 ~ 15038914 (+)
G3736 NA other upstream 769704 14961173 ~ 14963583 (+)
LOC107197063 capns1,LOC108425806,LOC105901516,LOC107700232,LOC107548486 other upstream 887661 14840293 ~ 14845626 (+)
LOC103039352 nova2,LOC103039352,LOC108440380,LOC108277822,LOC107669728,LOC107589717,LOC107756760,LOC107379798 other upstream 1228272 14444558 ~ 14505015 (+)
LOC103040601 NA other downstream 19577 15781638 ~ 15826103 (+)
G4221 NA other downstream 780881 16542942 ~ 16545854 (+)
G4219 ckm,ckmb,ckma,LOC107690449,LOC107683830,LOC107601735,LOC107743697,LOC107718278 other downstream 856985 16619046 ~ 16623069 (+)
LOC103039709 NA other downstream 2248117 18010178 ~ 18012103 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other downstream 2279228 18041289 ~ 18422356 (+)

Expression


Co-expression Network