LOC111192969


Basic Information

Item Value
gene id LOC111192969
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 20571402 ~ 20575427 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671431.1
ATGAAAACTCACCaatgttcagactgtgggaagagctttcATAGACTGAGTAATCTCAAATcacaccagctcattcacacagactgtgggaggattTTTAATCAACTGCCTCAACTCCAACTACATCAGCGCactcacacaggagaaaaaccttATCACTGtccagactgtggaaagagttttaatcaacaaattactctcaacacacaccagcgtattcacacaggagaaaaaccatattactgctcagaatgtgggaaaagttttaatCAGCTAATTATTCTAAACAGACATCAGCGcactcacacaggagagaaaccgtatcagtgttcagagtgtgggaagagttttaatcaactggGTCACCTCCAACAGCACCAGTGcactcacacaggagagaaaccatatcactgctctgAGTGTGGAAAAAGTTTTAATCAACTGGGTCACCTCCagctacaccagcgcattcacacaggagagaaaccgtattactgtttgAAGTactgtggaaagagttttaatcaactgcCTCAACTCCAACTACATCAGCGCactcacacaggagaaaaaccatattactgctcagaatgtgggaaaagttttaatCAGCTAATTATTCTAAACAGACATCAGCGcactcacacaggagagaaaccgtatcagtgttcagagtgtgggaagagttttaatcaactggGTCACCTCCAACAGCACCAGTGcactcacacaggagagaaaccatatcactgctctgAGTGTGGAAAAAGTTTTAATCAACTGGGTCACCTCCagctacaccagcgcattcacacaggagagaaaccgtattactgtttgAAGTGTGAAAAGAGCTTCAGGCATTCACCTACATTTAAAAACCACAAATGTTCTAATGGAGACCAAAGGGACAGTTTGCATATTACTGACCAGAATAAGATCAAAACTAAATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671431.1 True 954 mRNA 0.42 4 20571402 20575427

Neighbor

gene id symbol gene type direction distance location
LOC111192413 NA coding upstream 13744 20555459 ~ 20557658 (+)
LOC103036360 NA coding upstream 22971 20545540 ~ 20548431 (+)
LOC107197593 NA coding upstream 25998 20537720 ~ 20545404 (+)
psmd2 psmd2 coding upstream 35195 20521214 ~ 20536207 (+)
LOC111192961 NA coding upstream 729425 19841219 ~ 19841977 (+)
eif4g1 LOC108280304,LOC103370583 coding downstream 9719 20585146 ~ 20637948 (+)
LOC111192490 LOC108277610 coding downstream 96300 20671727 ~ 20689357 (+)
fam131a fam131a,LOC102799247 coding downstream 125275 20700702 ~ 20724574 (+)
LOC103033175 NA coding downstream 156858 20732285 ~ 20740993 (+)
LOC103030875 LOC108413394,LOC108278199 coding downstream 432694 21008121 ~ 21086736 (+)
G4951 NA non-coding upstream 85237 20485825 ~ 20486165 (+)
G4949 NA non-coding upstream 116909 20452126 ~ 20454493 (+)
G4940 NA non-coding upstream 186147 20384764 ~ 20385255 (+)
LOC111192871 NA non-coding upstream 191107 20379244 ~ 20380295 (+)
G4932 NA non-coding upstream 266477 20304689 ~ 20304925 (+)
G4994 NA non-coding downstream 128333 20703760 ~ 20704500 (+)
G5003 NA non-coding downstream 181748 20757175 ~ 20762971 (+)
G5012 NA non-coding downstream 307384 20882811 ~ 20883093 (+)
G5028 NA non-coding downstream 406816 20982243 ~ 20982748 (+)
G5036 NA non-coding downstream 512547 21087974 ~ 21160121 (+)
LOC107197594 NA other upstream 19767 20549191 ~ 20551635 (+)
G4775 LOC108411134 other upstream 1405771 19160731 ~ 19165631 (+)
G4612 NA other upstream 1811544 18759375 ~ 18759858 (+)
LOC103034503 efhd1,LOC103034503,LOC107669899,LOC107741634,LOC107585735,LOC107564379 other upstream 2149046 18041289 ~ 18422356 (+)
G5026 NA other downstream 408280 20983707 ~ 20999200 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other downstream 1481095 22056522 ~ 22154926 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other downstream 1832129 22407556 ~ 22524746 (+)
LOC103041654 chordc1,LOC108412466 other downstream 2067183 22642610 ~ 22673984 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other downstream 2133485 22708912 ~ 22758213 (+)

Expression


Co-expression Network