LOC103022049


Basic Information

Item Value
gene id LOC103022049
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 22165399 ~ 22190308 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671450.1
ATGACTTCAGGGAAGCTCTGCAGGTGTCTTCTGTTCCTGCTTATCCTCTCAGCCCTGAGGGCGGCCTTCAGCGaTGATGGCGCTGCATTGCAGGTCGTGGAGGGCAGAGTGGACGGGTCTGTGTTGCTGAGGTGCAACGTTAGTGATTCTCCCCCCGTAAAAGGGATTTACTTCCAGAAGGACAACAAGGAAGATGACAACAAGAAAGAAAGGATCATCTTTGTAAACGGCTTCTACACTAAAAATCCCGACATAAGCCCTGAGTACATTAACAGAACCAGTGTAAACAGATCTGATAAAAGCTTAAAGATGTGGAACCTGAAAGTGTCCGATGAAGGAGAATATTTTTGCGCTGTAATGTCCGAACCAGAATCCTACACCGCTACTAAATTCAATCTGACTATTAAAgCTCCCTTCAGCATTCCCACAGTGACCATAAAGAGTCGTAGTGACGGTGGAGATGGCACAGAGAGCTGGGCGCTGCACTGCCTGTCGTCAGGTGGATACCCGCCAGATGTCCTGAACTGGACGGTGTTTGGGAAGGAGAACAGCGTCCTGCTGCAGGAAGGGGTCAGTCAGAGCTACGCTGATGAGCACTCCGGAGTGTGGACCATTAACCAAACAGCCACATTCAACTGCACTCACCCTGCCAACATCACCTGCTCAGTAGGTGGCGCCACATCCCCCCCATTCAGCATATgtACAGATACACCGTCTTCTCCTGAGTACACAGTGATCATAGCGGTAGTTCTACTTTTTCTATTCATCCTGGTTGTCGTCATCATTCTCATAAGGGTGTGCCAAAGACAACAACGCCCAgAAGTGGAGCTTGCCACAGTAGAGACTGACCAATTAAAGCCGGCTGACCCCTGCCCTGCTGAGTCTTTCCTATAAGATGATCTGAGGATCTTGAAAGGCGTCTTACTGAGGGGACGGACAGTGGACCTGCCAGCGGTCAAGACTGAACAAAGGGACTAATACAGGAAAGCTCCAGGAACCGCTAAAGCTGAAGGCCCAAAAGACCAGAGGACCAGGACATTCCTTATGGTCTCAATATTCAACTTCACCACATTTTACGCAAAAATGTTTACTATTCACTGTAGTCTTTCACCAGGGGAGAAAAGAAAGTCCTATTACAAAAGGA

Function

GO:

id name namespace
GO:0045088 regulation of innate immune response biological_process
GO:0045089 positive regulation of innate immune response biological_process
GO:0031347 regulation of defense response biological_process
GO:0031349 positive regulation of defense response biological_process
GO:0002376 immune system process biological_process
GO:0002682 regulation of immune system process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671450.1 True 1144 mRNA 0.49 7 22165399 22190308

Neighbor

gene id symbol gene type direction distance location
il1rap NA coding upstream 3204 22138587 ~ 22162195 (+)
LOC103025996 LOC103025996,LOC108411840 coding upstream 114844 22044722 ~ 22050555 (+)
LOC103025167 NA coding upstream 127755 22032579 ~ 22037644 (+)
phox2a phox2a,LOC107738288,LOC107679437 coding upstream 251631 21908273 ~ 21913768 (+)
clpb clpb,LOC107568463,LOC108261447,LOC108276567 coding upstream 274422 21824927 ~ 21890977 (+)
dync2h1 dync2h1,LOC108413322,LOC107566891 coding downstream 67850 22258158 ~ 22329193 (+)
aasdhppt aasdhppt coding downstream 316559 22506867 ~ 22515457 (+)
LOC103031483 NA coding downstream 396882 22587190 ~ 22594557 (+)
trnag-ucc_4 NA coding downstream 399152 22589460 ~ 22589531 (+)
trnag-ucc_5 NA coding downstream 400193 22590501 ~ 22590572 (+)
G5371 NA non-coding upstream 36105 22126998 ~ 22129294 (+)
G5333 inppl1,inppl1a,LOC108261207,LOC107710497 non-coding upstream 226193 21932689 ~ 21939206 (+)
G5331 inppl1,LOC108261207,LOC107731861 non-coding upstream 240520 21923120 ~ 21924879 (+)
G5329 NA non-coding upstream 244902 21916582 ~ 21920497 (+)
G5067 arap1,LOC107729594,LOC107557643,LOC107701599 non-coding upstream 495747 21662490 ~ 21669652 (+)
G5382 NA non-coding downstream 2625 22192933 ~ 22193883 (+)
G5416 NA non-coding downstream 24103 22214411 ~ 22215051 (+)
G5455 NA non-coding downstream 153768 22344076 ~ 22345782 (+)
G5595 NA non-coding downstream 516805 22707113 ~ 22707769 (+)
G5619 NA non-coding downstream 632563 22822871 ~ 22824066 (+)
LOC103022859 fgf12,fgf12b,fgf12a,LOC108411839,LOC108278337,LOC107689585,LOC108436038 other upstream 10473 22056522 ~ 22154926 (+)
G5026 NA other upstream 1166199 20983707 ~ 20999200 (+)
LOC103037169 NA other upstream 1582525 20558523 ~ 20582874 (+)
LOC107197594 NA other upstream 1613764 20549191 ~ 20551635 (+)
G4775 LOC108411134 other upstream 2999768 19160731 ~ 19165631 (+)
LOC103043812 gria4a,gria4,LOC107725765,LOC107670112,LOC107689577,LOC107566895,LOC107560842,LOC107756206,LOC107756230 other downstream 217248 22407556 ~ 22524746 (+)
LOC103041654 chordc1,LOC108412466 other downstream 452302 22642610 ~ 22673984 (+)
LOC103045948 grm5b,LOC108411478,LOC107670133,LOC107737424,LOC107731813,LOC107669866 other downstream 518604 22708912 ~ 22758213 (+)
G5620 LOC107694033,LOC107752375,LOC107592755,LOC105030986 other downstream 712458 22902766 ~ 22923081 (+)
G5646 NA other downstream 773752 22964060 ~ 22964924 (+)

Expression


Co-expression Network