farsb (farsb,syfb,LOC107585746)


Basic Information

Item Value
gene id farsb
gene name farsb,syfb,LOC107585746
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 24253928 ~ 24261667 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671472.1
ATGACCTGGATACCATCTCCGGACCATGTGTCTTTGTgcgttcgtgtgtgtgtgtctgttcagACGGCTGGTGTGAGACCCCACGCTGTGGCTGCAGTGTTGCGAAACATCACCTTCACACAGAATCGTTATGAGAGCTTCATCGAGCTGCAGGAGAAACTCCATCAGAACGTCTGcagGAAAAGGACACTGGTTGCTATAGGAACTCATGACCTGGATACCATCTCCGGACCGTTCACCTTCACGGCTAAAGCTCCCGACGACATTCGCTTCACCCCCCTGAACCAGAGCCAGGAGTACACCGCCACCCAGCTCATGAGCCTCTACAAGacaGACAGTCACCTGAGGCATTACCTGCACATCATTGAGGATGAGCCTCTCTACCCCATCATCTACGACAGCAACGGCATAGTCCTGTCCATGCCCCCCATCATCAATGGGGATCACTCCAAAATATCTGTGAACACGAAGAACGTCTTTATCGAGTGTACGGCCACAGATCTCACCAAGgcCAAAATCGTACTGGACATGATTGTGACTATGTTCAGTGAATACTGTGCCGAGCCATTCACGGTTGAGGAGGCTGAAGTGGTTTATCCGGATGGCAGGATGGTCACTTATCCAGAGCTGGCCTACAGGACTGAAACCCTTTCAGCAGATTATATCAACCGCAGAGTAGGAATCAGtGAATCAGCTGATAGCGTTGCTCAGTTGTTGACGAGGATGTGTCTGAAGTCGGAGGTTGTTGGTGATGATGGTCAGATCCTGGTGGAGATCCCGCCCACTCGCTCTGATGTTATCCACGCCTGTGACATCATGGAGGATGCTGCTATGGCATATGGCTTTAATAACATCACTATGACAACACCACGCACATACACTATAGCCAATCAGctCCCTTTAAATAAGCTCACGGAGTTGTTGAGGATGGATCTCGCAGCAGCTGGATTTACTGAAGCGCTTACCTTTGCTCTGTGTTCCCAGGAAGATATAGCAGATAAACTGGGAAAGAAGATCACAGAGACCAGAGCTGTACACATCTCCAACCccaaaacagcagaattccagGTGGCGAGGACCACTCTGCTTCCAGGGCTACTAAAGACTCTGGCTGCTAACAGGAAGATGCCCCTCCCCCTCAAACTGTTTGAGATCTCCGATGTAGTTCTGAAGGACGAAACCACCGATGTTGGAGCTCGGAATAACAGGCGTCTGTGTGCGGTTTACTACAATAAGAGTCCGGGCTTCGAGGTGACCCACGGCCTGCTGGACCGGGTCATGCAGCTGCTGGAGGTCCGACCGGGCCGTAAACGCGGATACTACATTCAGGCCGCCGAGGacTCCTCCTTCTTCCCGGGACGCTGTGCGGAGATCTATGCTCATGAGAAGGTTGTGGGACGTCTCGGCGTTCTTCACCCTGACGTTATTAACGGCTTCGAGCTCACCATGCCCTGCTCCGCCCTCGACATTGATCTCGAGCACTTCCTGTGACCTCACAGCTGACACCCTCTGCACTAGCCACGCCCATTAACACTTCTCACTGCATCTATTGGCTGCTGTTTACATCTACTGTCCTCATTCGCGCATGGAAGGAGTGGGCGGAGTCTCCTTTTACTGTCAGGTTCAGGTGGCGTTCTGTGGAGATATGGTTGTTACGCagatattagttttatttaagataAATATTTCATCATTCATAAACAGTTGGTGAATGCCCGTACTCCATATAACTGcatattacagtaaataaagacaGATCAAGACTGAattctgaaa

Function

symbol description
farsb Predicted to enable several functions, including ATP binding activity; magnesium ion binding activity; and phenylalanine-tRNA ligase activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of phenylalanine-tRNA ligase complex. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; musculature system; and nervous system. Orthologous to human FARSB (phenylalanyl-tRNA synthetase subunit beta).

NR:

description
phenylalanine--tRNA ligase beta subunit

GO:

id name namespace
GO:0006432 phenylalanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004826 phenylalanine-tRNA ligase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01890 FARSB, pheT; phenylalanyl-tRNA synthetase beta chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671472.1 True 1776 mRNA 0.51 14 24253928 24261667

Neighbor

gene id symbol gene type direction distance location
usp16 NA coding upstream 5433 24235851 ~ 24248495 (+)
LOC103021580 grik1b,LOC108410432,LOC107669874,LOC107670116 coding upstream 37076 24181559 ~ 24216852 (+)
LOC103042333 NA coding upstream 74284 24177344 ~ 24179644 (+)
LOC103043067 LOC103043067,LOC108410425 coding upstream 78111 24173386 ~ 24175817 (+)
LOC107196838 LOC107196838,LOC108410423 coding upstream 83291 24166477 ~ 24170637 (+)
LOC103047234 NA coding downstream 21655 24283322 ~ 24287126 (+)
LOC111192659 NA coding downstream 30261 24291928 ~ 24296350 (+)
LOC103022207 NA coding downstream 49375 24311042 ~ 24326538 (+)
LOC103046413 LOC103045605,LOC108425892 coding downstream 67353 24329020 ~ 24340961 (+)
LOC103045605 LOC103045605,LOC108425892 coding downstream 85888 24347555 ~ 24359302 (+)
LOC111192653 NA non-coding upstream 16 24253155 ~ 24253912 (+)
G6051 NA non-coding upstream 128566 24114947 ~ 24125362 (+)
G6049 NA non-coding upstream 144931 24107964 ~ 24108997 (+)
G5898 NA non-coding upstream 163446 24088651 ~ 24090482 (+)
G5913 NA non-coding upstream 172567 24080638 ~ 24081361 (+)
LOC111192656 NA non-coding downstream 9883 24271550 ~ 24279468 (+)
G6167 NA non-coding downstream 122768 24384435 ~ 24384926 (+)
G6168 NA non-coding downstream 123436 24385103 ~ 24394430 (+)
G6189 NA non-coding downstream 163195 24424862 ~ 24429277 (+)
G6190 NA non-coding downstream 173929 24435596 ~ 24456708 (+)
LOC103022942 LOC106931471,LOC106940241,LOC101067200,LOC107659943,LOC106603438 other upstream 346454 23876999 ~ 23907474 (+)
LOC103035426 NA other upstream 406561 23839993 ~ 23847367 (+)
G5871 NA other upstream 420098 23832236 ~ 23833830 (+)
G5797 srsf1a,srsf1b,LOC103029385,LOC108415197,LOC107587230,LOC107704814,LOC108278759,LOC108278234,LOC107661749 other upstream 902622 23312512 ~ 23351306 (+)
LOC103024639 NA other upstream 1097562 23081391 ~ 23156366 (+)
LOC103027586 LOC108425877 other downstream 1150527 25412194 ~ 25428351 (+)
G6576 ywhae,ywhae1,LOC107690422,LOC107578326 other downstream 1778489 26040156 ~ 26046246 (+)
LOC103042574 NA other downstream 2657624 26919291 ~ 26931495 (+)

Expression


Co-expression Network