LOC103027419 (dpf1,LOC107672425,LOC107561370,LOC107749650)


Basic Information

Item Value
gene id LOC103027419
gene name dpf1,LOC107672425,LOC107561370,LOC107749650
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 5501219 ~ 5595495 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677650.1
ATGAAAGTGGAATAGCTGTATATATTGGGACGCTTCATGTCCAACGCCGGGGATCTGCAGCCTTACATTCTATCATTCTATATCAACATGGCCACGGCGGTGCAGAACCCGCTCAAATCGCAGTCGAGTGGAACCGTCATAAAGAACAGTCTGGGCGAGGAGTTTTACCGTGATGCGATTGAACACTGCCGAAGCTATAATGCCCGTCTGTGTGCCGAGCGCTCCATGCGTCTGCCGTTCCTGGACTCTCAAACGGGCGTAGCACAGAGTAACTGCTACATATGGATGGAGAAGAATCACAGAGGCCCAGGTGTGGCGCCGGGTCAGCTATACACCTACCCGGCTCGCTGCTGGCGCAAGAAGAAGCGGTTAAACATCCTGGATGACCCGCGGCTGGGGCCCATCGAGTTTAAGATCGACTACGAGGCAGCCCTGAAGAAGGAAGGCGGAGTTCCTGAGGGTCCGGTTCTGGAGTCCCTGCTCAGTGGAGAGCCGCTGGACAAAAAGGTGGAAACCAAGGAGGAAGAGGCCATGAGCGAGTGTCAGaagctgctAGTTGGAGACTTCCCACATGAGCTGGATATTGAAGAAATGGAGGAGGACGTTCCCAAGCGCAAGAACCGCACCAAAGGACGtgtgtgtggtgttggtggaatGAGGAAGAGACAGGACCCGGCCTCCATAGAGGACAGAGACAAGCCGTACGTCTGCGACAtctgCGGCAAACGTTACAAGAACCGCCCGGGCCTGAGTTACCACTACACCCATACACACCTAGCGGACGAAGAGGGAGAGGAGGACTCTGAACGCCACACTCTTCCATTCCAACGCAAGAACAACCACAAGCCCAAAAAAGCTGCAGACGGCTCGGTCATCCCCAACGGTTACTGTGACTTCTGCCTGGGAGGCTCCAAGAAGACCGGCTGCCCGGAGGACCTCATCTCCTGTGCGGACTGCGGCCGATCAGGCCACCCGTCCTGCCTGCAGTTCACAGTCAACATGACGGCGGCGGTGAGAACCTACCGCTGGCAGTGCATCGAGTGCAAGTCCTGCAGCCTCTGTGGCACCTCTGAGAACGACGATCAACTTTTATTCTGTGATGATTGTGACCGAGGGTACCATATGTACTGTCTCAGCCCACCAATGGCAGAACCTCCAGAAGGTATGATTTTTATTGATATGTTAATTCAATAAATAGTCAGTTAACTTATTTGTTGAAAGGAGGGAATATTTACACCACACACCTCCAGATTTACTAAACAATTATTAATTACATGTAAACCAATTGTTACCATTGCGTcaccatttttacacatttctcaCACTAAATACACTGATATGATAAATGTAGTGGGACAGAAACTAGTAGTGTGTTCCATGGTAAAAAGAACTGCACAGACCTTTGGAAATATTTGTAGGGACAAGACAAAATAGGGCAAGAAAGGACAGGAGAGGAGAGGGTAGGACACAGAATGACAGGAAGTACAGGAATAGCCAGGACAGAAAAGAGAAGGACTGGGTAGGAAAGAAAAGAGCAGGACTGAATAGGACAGCAACAaggtacatacagtacatacaagaAAAGGacaggaaagagaaagacaaagactGGTTAAGAATGAAGAcatgaaagtgaaagaaagaaaagtgcaGGACAGAATATGTCATGGAAAAGATAG

Function

symbol description
dpf1 Predicted to enable histone binding activity and transcription coregulator activity. Predicted to be involved in negative regulation of transcription, DNA-templated; nervous system development; and positive regulation of transcription by RNA polymerase II. Predicted to be part of nBAF complex. Is expressed in brain; olfactory placode; and telencephalon. Orthologous to human DPF1 (double PHD fingers 1).

NR:

description
PREDICTED: zinc finger protein neuro-d4-like isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K22198 BAF45B_C, DPF1_3; BRG1-associated factor 45B/C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677650.1 True 1679 mRNA 0.50 11 5501219 5595495

Neighbor

gene id symbol gene type direction distance location
numbl numbl,LOC106612624,LOC101482557,LOC108247327,LOC102206931 coding upstream 49303 5361203 ~ 5451916 (+)
coq8b coq8b,LOC108442867 coding upstream 141869 5335881 ~ 5359350 (+)
slc5a2 slc5a2,LOC107678242 coding upstream 178664 5308555 ~ 5322555 (+)
LOC103030600 si:dkey-260j18.2,LOC103030600,LOC108442862,LOC108278347,LOC105903253,LOC107758546,LOC107561384 coding upstream 203249 5291106 ~ 5297970 (+)
LOC111192937 NA coding upstream 335780 5102073 ~ 5165439 (+)
LOC103026943 LOC103026943,LOC108278393 coding downstream 18248 5613743 ~ 5618836 (+)
LOC103031751 NA coding downstream 35901 5631396 ~ 5656055 (+)
LOC111194277 NA coding downstream 721810 6317305 ~ 6327911 (+)
LOC103031157 LOC108442282,LOC107594665,LOC107710606,LOC107700523 coding downstream 786291 6381786 ~ 6405982 (+)
LOC103037029 NA coding downstream 1351328 6946823 ~ 6961558 (+)
G1702 NA non-coding upstream 59079 5439217 ~ 5442140 (+)
G1692 NA non-coding upstream 129367 5371341 ~ 5371852 (+)
G1639 NA non-coding upstream 196005 5303504 ~ 5305214 (+)
G1637 NA non-coding upstream 198141 5301373 ~ 5303078 (+)
G1638 NA non-coding upstream 200001 5300659 ~ 5301218 (+)
G1837 NA non-coding downstream 190331 5785826 ~ 5786057 (+)
G1873 NA non-coding downstream 332662 5928157 ~ 5928697 (+)
G1897 NA non-coding downstream 737694 6333189 ~ 6334080 (+)
G1902 NA non-coding downstream 755016 6350511 ~ 6351012 (+)
G1916 NA non-coding downstream 821828 6417323 ~ 6417565 (+)
LOC111192942 NA other upstream 224231 5250484 ~ 5276988 (+)
LOC103026740 NA other upstream 257032 5171375 ~ 5244187 (+)
G1127 LOC107669897,LOC107733923,LOC107558818 other upstream 1514491 3981824 ~ 3986728 (+)
kcne4 NA other upstream 1704671 3794819 ~ 3796548 (+)
G1045 NA other upstream 2051577 3448476 ~ 3449642 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other downstream 85531 5681026 ~ 5703183 (+)
rwdd3 rwdd3 other downstream 813351 6408846 ~ 6414794 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other downstream 917649 6513144 ~ 6554450 (+)
G2304 NA other downstream 2964571 8560066 ~ 8560478 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 3137228 8732723 ~ 8734952 (+)

Expression


Co-expression Network