LOC111194277


Basic Information

Item Value
gene id LOC111194277
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 6317305 ~ 6327911 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677903.1
atcaaaggaattagtggacttgctttttaAGTGAGTTTTGGTGacaggactgagaaaaatgtaacCATCTTCAGCTTAAAAACCTTGTAAAAGATTAAGCAACGCTGCATGAGTTTGAGCAGTTCATggtttgaatatttaaatatgtgttattaAATTTAGGTTTCATTTGGAAGAGTtgcaacaagcaaatggcacccattcagtggaatggcccttAAACAGTTACAGACCGGAGCTGACTAGTGTCCTGCTGCTCTTTCATGTGAATATTCTGCAGGTACTTAATTGAAATGGTTGTAGCATGGATGATGTGTTTCCCCTACTTGCCATTGAACATCCTGCATGTGCCTGGTGTAATGACCATGGTAAATTGATACACTGTGCAActacacactgtgtgtgtagaGTAAAAGCTTGATGATGGGGCTTTATCAGTCCAGCAGTGGAGGAGAAACATCTGATTCAAAAGTAAAGCCTGCAGAACCcccagaacccagctgtgtgtctataaAGAGTGAAGGGTCTATGGGGGAACCTCCTAAATTCAGCAGTGGAAGaggagaacccagctgtgtgtctatgaagagtgaacGGTCTATGGGGGAACCTCCTAAATTCAGCAGTGGAAGaggagaacccagctgtgtgtctatgaagagtgaagGGTCTATGGGGGAACCTCCTAAATTCAGCAGTGGAAGaggagaacccagctgtgtgtctatgaagagtgaacGGTCTATGGGGGAACCTCCTAAATTCAGCAGTGAAAGaggagaacccagctgtgtgtctatgaggAGTGAAAGGTCTATAGGGGAACCTCCTAAATTCAGCAGTGAAAGaggagaacccagctgtgtgtctatgaagagtgaacGGTCTATAGGGGAACCTCCTAAATTCAGCAGTGGAGCCGCACCCTGTGATTCAGAGCAGTTCTACACAAAAGTAGCACCACACTCACACTCGCTGGAAGGAGGATTTGGTCCCCTGCAGCACGTTTCTCACCAACCAGTGGACAATATTCTGCACATTGTCATAAAGAGACACAAAATAAGCATGAAGAACAAGTACAAAAACTTTTGTGAtggaataaaaacagaaaataataaaacccttctaaacaaaatatacacacagctctatatcatagagggagagagtgaagggGTGAATGAAGAACATGAGGTTTTACAGATGGAGAAAACACTCAAGACACACAGACAAGATACTCTAATTAACTGCTCAGACATCTTTAAATCTCTACAAGATCAGAAAGTTCTCAAATACAAAGAAATAGAAGAGAATAAAGGACAGAATCTCAGAAATGTCCTGACTAAAGGTAttgctggaattggaaaaactGTCTCTGTGCAGAAATTCATTCTGGACTGGGCAGAGGGTAAAGCCAATCAGGATGTAGATTTTATGTTTGTATTTCCGTTCCGGGAGCTGAACTTGATTGAAGATCATCAATTCAGTCTTCATGGACTTCTGTGTGACTTCCATCCTGAGATTAAAGACCTGGATCCAAAGATCTATGATTATCACAAAGTTGTGTTCATATTTGATGGCCTGGATGAAAACAGAATTCCACTGAACTTTTCACAGTGTGAGAAAGTATCTGACATCACCCGGACCACATCAGTGGGTGTGTTGATGACAAATCTCATAAAAGGAGAGCTGCTTCCATCTGCTCGATTCTGGATAACCTGTCgaccagcagcagccaatcagatccctTCTAAATACATCAACCGTGTGACAGAAATCCAGGGATTCAATGACCCACAAAAGGAGGAATACTTCAGAAAGAGAATCAGTGACCAAGGCCAAGCCCAAAAAGTCATCTCCCACATTAAGACAGCAAGGAGCCTCCACATCATGTGCCACATTCCTGTCTTCTGCTGGATCACAGCCACTGTGCTTCAGAGAATCATCAACCAACATCAAACAGAAATCCCTAAAACTCTGACTGAAATGTATTCCCACTtcctgatcactcaaaccaacATTAAGAACGAGAAATATGAGGAGGAAGATGAGAAAGACCCAGAGAAACTGCTGGAATCTAACAGAACCGATCTTCTGAAACTGTCTGAACTGGCTTTTAAACAGCTGATGAAGGGCAATGTGATGTTCTATGACGAAGATTTGAGAGAGAGCAGCATTGACATCACACTGGCCTCAATGTATTCTGGGGTTTTCACTGAGATCTTTAGGGAGGAATCTGTGATTTTCCAGAGGAAGGTCTACTGCTTTGTTCATCTGAGCTTTCAGGAGTTCCTGGCTGCTGTTTATGTGATTCACTGCTATGAGAGAAAGAACATGGATAAACTGCAGTGTTTTATACCATGGTACAAAAAGTGGTCTGAGAATATTTCGATGGATGATCTGCTGAAGGAAGCTGTGAATAAAGCTGTAGAGTGTCAGAATGGACAGCTAGATCTTTTCCTCCGTTTCCTGCTGGGCATCTCACTGGATTGTAATCAGAGACTCCTACAGGGCCTACtgatacccacacacacacaatcagagAAAACCACAAAGTACATCAAGAGCTTAATCAAAGGAGATGAGAGGTTTCTTTCTACTGAGAGATCCATCAATCTGttcctctgtctgtctgaaatGAAGGACCAGTCTCTCTCCAGAGAGATTCAGGAGTAcctaaaatcagagaaacactCAGAAGTGAAGCTCTCTCTTGGACAGTGTTCAGCACTAGCCTGCATGCTTCTGACCTCAGAGGAGGTTCTGGAGGAGCTGGACCTGAAACAATACAACACATCAGAGGAGGGCTACAGGAGACTAATACCAGCTGTGACTGTCTGCAGAAGagctgtACTTTCTGGCTGTGATCTCACCAAAGACTCCTGTAAAGTTCTATGCTCTGCTCTACAATCAATaaactcctccctgaaagagctggacctcagtaaaaATGACCTTCAGTGTTCAAGAGTGGAGCTGttctctgctggactgaggagttcacactgtaaactggagacacTCAGGCTAGCTATGTGTAAACTTGCGAGAAACTCTTGTAAAAATCTGGGATCTGTTCTACAACAAGTaaactcctccctgaaagagctggacctcagtaataATGACCTGCTTGactcaggagtggagctgctctctgctggactaaagagttcacactgtaaactggagacacTAAGATTATCTGGGTGTATGGTTACAGAAGAAGGATGTTCTTCTCTGGCTTTAGCTCTGAAATTAAACCCCTCCCACCTGAGAGAACTGGATCTGACCTATAATCACCTAGGAGAGTCTGGAGTGAAGCTTCTTTCTGATCTACAGAAGGatccacactgtaaactggagaaactgcTggcAGAGCATGGAGGAAAAAACAGGATGAAACCAggacttaaaaaatATGCCTGTAAGCTCACTCTGGATCCAAACACAGCCCACACTCACCTCTCTCTGTCCGAGGGGGAAAGAAAGGTGGAGAGGCCTCAGGTTCTGAGTGTGGAGAGTCTGActggacgctgttactgggaggctgaGTGGAGCGGGGTGAGGGTTGATATATCCGTATCTTACAGAGGAATTGGAGACGATGATGACACTCAGACTGGATCCAATAACCAGTCCTGGAGTTTGCAGCACTTTAATAACAGTTACACTGTTTTTCACAATGACAAGATAATCTATGATCTTCCCTACTCACCCCAGTCTGGTAGAGTGGGAGTGTATCTGGACTGGCCGGCCGGAACTCTGTCCTTTTACAGCATctcaccttacacacacacacttactcacatacacactctgcTCACCACATTCACTGAGCCTCTCTACGCAGGGTTTAGGATTTATTCTGACTCCTCAGTGTGGTTAACATAGAATGGCATCTACACAGGATCTGGACTAATGacgtgtgtgtgcatgtctaattttgtgttttatcaatataattgtattgtaaaatgttGGTATAAATAAAATTGCCTTTATTGTTCTATCTGTAAAAGGGTTTAATCtgtaaaaaaggtttatttcatAAAGCTGTAGCCCTAAATAGgctctatgtaaaaaaaaaaatgtcttataCTTTCTTTGCATTTAGGGGTATGTGCAACACAGTTTATAAACCAGAGTAACTTAATTCAGAACCTAACTATGaattgaatataatatatatttaaaagttaaCTATTGTGTTGACTAAGCTAATTAAACTAAGAAATAGTTTGCTATAAATAAGTGCATAAATACTAAAAGTGGAAgatgaatgtttttatttattttatttagtcatTTTCCTCGATACTGAATAAAGCCAGGAATTTGTGTGGTGATTTGTAGAGACCTGTGAGTGTGCGTTCCCATTGTCTACACTCTCAGCTCTCTCTGCGTTCAGccagacaaaaaaaagttaaaagttaaaaataagtgATGACAGCTTATTTAATAGCTTTAACAAATTGGCGCTGAACAGACAATGCAAGGGGGAAAGCTTCTTCTCAAAGAACAATGAGTTTATTACACTTTTTGCATTGGTGAGCAGCAATGTTAATTTTGTAGTCGTACATACTGTAGAAGCTATTGCTATCTCCATATATTCCTGTGTTTATGAGTAGATAGAGTGACAATATAAGTGTTATATGGTCTTTTTATATGTTAACTACTATTATTGTGAACTAAGAGTGATTTATATAACTCTTTTTTGGAAAGTTTACAAGCGTTTTGGTGCCTAGTGCTACAGGAATTGTTTATGCTTAATATGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677903.1 True 4779 mRNA 0.41 10 6317305 6327911

Neighbor

gene id symbol gene type direction distance location
LOC103031751 NA coding upstream 661250 5631396 ~ 5656055 (+)
LOC103026943 LOC103026943,LOC108278393 coding upstream 698469 5613743 ~ 5618836 (+)
LOC103027419 dpf1,LOC107672425,LOC107561370,LOC107749650 coding upstream 721810 5501219 ~ 5595495 (+)
numbl numbl,LOC106612624,LOC101482557,LOC108247327,LOC102206931 coding upstream 865389 5361203 ~ 5451916 (+)
coq8b coq8b,LOC108442867 coding upstream 957955 5335881 ~ 5359350 (+)
LOC103031157 LOC108442282,LOC107594665,LOC107710606,LOC107700523 coding downstream 53875 6381786 ~ 6405982 (+)
LOC103037029 NA coding downstream 618912 6946823 ~ 6961558 (+)
LOC103041009 NA coding downstream 687397 7015308 ~ 7020982 (+)
LOC111194639 NA coding downstream 834335 7162246 ~ 7167800 (+)
LOC103039155 NA coding downstream 853871 7181782 ~ 7188573 (+)
G1873 NA non-coding upstream 388608 5928157 ~ 5928697 (+)
G1837 NA non-coding upstream 531248 5785826 ~ 5786057 (+)
G1702 NA non-coding upstream 875165 5439217 ~ 5442140 (+)
G1692 NA non-coding upstream 945453 5371341 ~ 5371852 (+)
G1639 NA non-coding upstream 1012091 5303504 ~ 5305214 (+)
G1897 NA non-coding downstream 5278 6333189 ~ 6334080 (+)
G1902 NA non-coding downstream 22600 6350511 ~ 6351012 (+)
G1916 NA non-coding downstream 89412 6417323 ~ 6417565 (+)
G1941 NA non-coding downstream 161452 6489363 ~ 6517105 (+)
G1942 NA non-coding downstream 206550 6534461 ~ 6537245 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 614122 5681026 ~ 5703183 (+)
LOC111192942 NA other upstream 1040317 5250484 ~ 5276988 (+)
LOC103026740 NA other upstream 1073118 5171375 ~ 5244187 (+)
G1127 LOC107669897,LOC107733923,LOC107558818 other upstream 2330577 3981824 ~ 3986728 (+)
kcne4 NA other upstream 2520757 3794819 ~ 3796548 (+)
rwdd3 rwdd3 other downstream 80935 6408846 ~ 6414794 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other downstream 185233 6513144 ~ 6554450 (+)
G2304 NA other downstream 2232155 8560066 ~ 8560478 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other downstream 2404812 8732723 ~ 8734952 (+)
lyrm9 lyrm9,LOC102789908 other downstream 2616550 8944461 ~ 8957392 (+)

Expression


Co-expression Network