LOC103027547


Basic Information

Item Value
gene id LOC103027547
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 8811248 ~ 8813220 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680152.1
gttaatgttattttaagaaatgtaagaaaCCTTACAGGagtttccagaaacagaaaGTGTATGTTTACTGCTCCACATACAGATCAAACAAATAGCACAAATGTCATTGAACCTTTGAGAAATAGCAAAACTGCAGTTGACATGGCTGCCaacacaaaatatgtttttaaactaTTTCAGGTCTCTGAAATGgagagtgtgaagtgtgtggttGTTGGTGATTCAGCTGTGGGAAAGAGCTGTCTCCTTATCACCTTCACCACCAATGCCTACCCTGGGGTGCTTGTCCCAACTGTCTTTGACAACTACAGTTCAGAGATCACAGTGGACTCCAGACCCATCACTCTTAACCTGTGGGACACTTCAGGTTATGAGGAATTCAACCGATTGCGTCCCTTATCCTACCCCCAAACAGACGTCTTCATCATATGTTTCTCCATCTCTTCGCCAGGCTCTTATGATAATGTCAGGTTTAAGTGGCATCCTGAGGTATGTCATTACTGCCCCAACGTACCCCTCCTGCTGGTGGGCACAAAAATAGACGAACGATATGATCCATGGATTTTAGAAAAGCTAAAGGAGTGGAAATTGACTCCTATTACCAAACAACAGGGGGAGGCCCTTGCTCGACAAATCGTAGCCATTAAATACCTTGAATGCTCGGCTCTAAAGCAAGTCGGAGTGAGAAAAGTATTTGTGGAGGCAATCCGTGCCTTCCTAAATCCAAAGCCTGTGCCTTCTAAAAGATCCTGTATTCGGTTATAAAGAAATGTTATAAGATGACCAATCCATGCTTTGTCCAAAGATGGATTCTTTCATATTATCTATGGCTGTTATCCTCAACTAACCAGGGGTTGTCCTAATGATTCTGCGTAGACTCTAcatgcaccaccaccaccctaaTCTGAAggtggattgatggatggacaattttagccagatgttGCTGGCTGAATATCACAATTCACTGCACTGCCCACTGTGATGAATTCCCAgtgcacatgtgacactgtggattgtgGAATGATAAATGCTTGCACGACTTTGGAAATTGGATGACCCATTCATCTGGTATCCTCTATCAGGCTTTGTTTTAACTTAACAATTAATGTAGTCTTTGCCATGGGCATGCTGGCTATTGTTCAACCTCATtcataagataacacctcacagcctACACGAGTGGGTCTTCCCAGGCCGTCCCTGAGGAAACACTAATTAATGACTTTTAGCATGTTAATGTAAaggtaaattaaaacatttaaataacttcAGCCATGGCccttcatgtattttttatacatcTCTGAAATTATACAGAGACATAGTGTGAAAGAAAGGAAAGCCTAAAACAGCTGGTTTCagattattctattttttttatatcagagaCATTATACATGAGCAGACTGGCTACTGGTAGAAACATGGTTTGGAGTTCTCATAACACTCAACATGGTGTCTGTTTATGCTAGTCAACATGCTGGTTACAAATCCCCCACgaatgtggagatctgcgcaggtgaagtactaaaaaacaaaaaaacaacaacaatgttttGTGCATTATTAAGACGACtgctaaaaatgttaaaattacgATTTGATCTTCagttttgtgtattttggtCTCTGATCTTTGAACTTGATCTTGTGGGAATGTAAATAACTGGCAGGCAGCATTGCAAAAAAGGCTGACAAGTAAAGGTTGGTGCTTGTGTTGTGATGAAGCCTGTTTCGCTTCATTTGTGCTGCTGCCACTCCCTGATTCCACTGATTGGAAGTCTTGCCAGTGAAAACAGCAAGAGGAAAAAAGTTTTGTTTCACTGCATTGAGAATGCCACATTACTCtaactctcaaaaaaaaaaaaaagaaacacctgaatacaatcaaaatcATTAAGCAGAAGGAAATTTAGTCCCAAGCTGTGGCTGAAGGGGAAAATCTGTTGGGCCACGTTTCCTCGTGTCTA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680152.1 True 1973 mRNA 0.41 1 8811248 8813220

Neighbor

gene id symbol gene type direction distance location
LOC111192950 LOC108432968 coding upstream 113666 8676662 ~ 8697582 (+)
LOC103026472 LOC108432989,LOC108277724 coding upstream 1031388 7317013 ~ 7779860 (+)
LOC111192949 NA coding upstream 1537941 7270865 ~ 7273307 (+)
LOC103038844 NA coding upstream 1608682 7189480 ~ 7202566 (+)
LOC103039155 NA coding upstream 1622675 7181782 ~ 7188573 (+)
LOC111194918 NA coding downstream 9270 8822490 ~ 8826360 (+)
LOC103022922 LOC103022922,LOC108277434 coding downstream 24152 8837372 ~ 8839379 (+)
LOC103022607 chrna10a,LOC108432977,LOC107570043,LOC446029,LOC106567906 coding downstream 33620 8846840 ~ 8854201 (+)
LOC111192952 NA coding downstream 126419 8939639 ~ 8940410 (+)
LOC103038411 NA coding downstream 341169 9154389 ~ 9156240 (+)
G2362 stim1,LOC108277929,LOC108432992,LOC101465674,LOC100691215,LOC102214188 non-coding upstream 24238 8743016 ~ 8787010 (+)
G2328 NA non-coding upstream 180401 8629797 ~ 8630847 (+)
G2326 NA non-coding upstream 183337 8627648 ~ 8627911 (+)
G2174 NA non-coding upstream 931722 7877733 ~ 7879526 (+)
G2125 NA non-coding upstream 1065336 7708197 ~ 7745912 (+)
G2393 NA non-coding downstream 44133 8857353 ~ 8862747 (+)
G2400 nos2,LOC108432969 non-coding downstream 62632 8875852 ~ 8882592 (+)
G2443 NA non-coding downstream 361116 9174336 ~ 9174756 (+)
G2453 NA non-coding downstream 502464 9315684 ~ 9316134 (+)
LOC111195023 NA non-coding downstream 573048 9386268 ~ 9394588 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 76296 8732723 ~ 8734952 (+)
G2304 NA other upstream 250770 8560066 ~ 8560478 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 2256798 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 2396454 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 3108065 5681026 ~ 5703183 (+)
lyrm9 lyrm9,LOC102789908 other downstream 131241 8944461 ~ 8957392 (+)
G2509 NA other downstream 818645 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 820873 9634093 ~ 9743491 (+)
LOC103029949 slc46a1 other downstream 2445226 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 2474911 11288131 ~ 11288846 (+)

Expression


Co-expression Network