LOC111194918


Basic Information

Item Value
gene id LOC111194918
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 8822490 ~ 8826360 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680405.1
GGGTAAGTTTACAATTCCATGTAACGACTACAGTTCCAAAGTTCAAAGATGTTTATGGTTATCTGAAGAGATATGACAGAACCAGGACCAAGACTGAGATATTTACTTTCTGTGTACTCCATTACAGGTCCCTGTAAAAGCTACTGAATGGAGATCATCAAATGTGTGCTGGTTGGAGATACAGCTGCAGAAAAGACCTGTCTTTTAATCTCCTTCACCACTAATTCCTCCCCCAAGGACTACATCCCAACTGTGTTTGACAACTACAAGTCAACTGTCATGGTGGATTCCAGACCCTTCACCCTTAAACTGTGTGACACAGCGGGTCAGGAGGACTACGACCGACTCCGTCCCTTATCCTACCCACATACCGATGTCTTCATCATATGTTTCTCCATCTCTGACCCAGCCTCTTATGATAATGTCAAGCTTAAGTGGTATCCTGAGGTTTCACATCACTGCCCTAACGTACCCTTCCTGCTGGTGGGCACAAAAATGGAAGAGCGAGAAGAtccaacagttttaaaaaaactaaaagagcaGAAATTGACTCCTATCACCAAGCAGCAGGGGGAGGCTCTCGCTCAGGAAATTGGAGCTACTAAATACCTTGAATGCTCGGCTCTAAAGCTAGTCAGAGTCAGGGAGGTATTTGTGGAGGTGGTTCATGCCTTTCTGAATACAAAGCCTGTCCTTCATGAAAAATCCTGTATGCTGTTATAAAGAAATGTGAATAGTTGACCTATCCATGCTTTTGTCCACAGGTGCATTATTTCATATTAGCTAGGGATGCTGTGCAGTGCTATGGGAGATTTTGGCCAATGGTTATTTTGTCTACAGTGGCACCTTCCAACCACAAACATACAATttgttttaagtgatagaccaacacaaagtagaaTATAATTATTAAGTGGAATGAAACTGACTCCCGGGTGTGAtccagaagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680405.1 True 950 mRNA 0.43 2 8822490 8826360

Neighbor

gene id symbol gene type direction distance location
LOC103023232 NA coding upstream 5803 8807167 ~ 8816687 (+)
LOC103027547 NA coding upstream 9270 8811248 ~ 8813220 (+)
LOC111192950 LOC108432968 coding upstream 124908 8676662 ~ 8697582 (+)
LOC103026472 LOC108432989,LOC108277724 coding upstream 1042630 7317013 ~ 7779860 (+)
LOC111192949 NA coding upstream 1549183 7270865 ~ 7273307 (+)
LOC103022922 LOC103022922,LOC108277434 coding downstream 11012 8837372 ~ 8839379 (+)
LOC103022607 chrna10a,LOC108432977,LOC107570043,LOC446029,LOC106567906 coding downstream 20480 8846840 ~ 8854201 (+)
LOC111192952 NA coding downstream 113279 8939639 ~ 8940410 (+)
LOC103038411 NA coding downstream 328029 9154389 ~ 9156240 (+)
LOC103045140 wscd1,LOC108432998,LOC107756514,LOC107682602,LOC107666180 coding downstream 581739 9408099 ~ 9463585 (+)
G2362 stim1,LOC108277929,LOC108432992,LOC101465674,LOC100691215,LOC102214188 non-coding upstream 35480 8743016 ~ 8787010 (+)
G2328 NA non-coding upstream 191643 8629797 ~ 8630847 (+)
G2326 NA non-coding upstream 194579 8627648 ~ 8627911 (+)
G2174 NA non-coding upstream 942964 7877733 ~ 7879526 (+)
G2125 NA non-coding upstream 1076578 7708197 ~ 7745912 (+)
G2393 NA non-coding downstream 30993 8857353 ~ 8862747 (+)
G2400 nos2,LOC108432969 non-coding downstream 49492 8875852 ~ 8882592 (+)
G2443 NA non-coding downstream 347976 9174336 ~ 9174756 (+)
G2453 NA non-coding downstream 489324 9315684 ~ 9316134 (+)
LOC111195023 NA non-coding downstream 559908 9386268 ~ 9394588 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 87538 8732723 ~ 8734952 (+)
G2304 NA other upstream 262012 8560066 ~ 8560478 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 2268040 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 2407696 6408846 ~ 6414794 (+)
pnkp pnkp,LOC107749649,LOC107672387,LOC107561379,LOC107758514 other upstream 3119307 5681026 ~ 5703183 (+)
lyrm9 lyrm9,LOC102789908 other downstream 118101 8944461 ~ 8957392 (+)
G2509 NA other downstream 805505 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 807733 9634093 ~ 9743491 (+)
LOC103029949 slc46a1 other downstream 2432086 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 2461771 11288131 ~ 11288846 (+)

Expression


Co-expression Network