LOC103045140 (wscd1,LOC108432998,LOC107756514,LOC107682602,LOC107666180)


Basic Information

Item Value
gene id LOC103045140
gene name wscd1,LOC108432998,LOC107756514,LOC107682602,LOC107666180
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9408099 ~ 9463585 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681094.1
GGAGAGGAGCGAGTGGAGACCGGAGAGCGGAGCGCGCGGGGGAAGGGGAGCGGGGCTGGATCACCCGGGCTCGGTTTAGATGCGGATTACCGCTGTTTCTAGTGGCTCCACCGAGAGATGAGAGCTACCCGGAGCCACGGAAGAGTCTGAAGAGGAGTATTCTCAGCCTCGGGTACTTCTGTCAACAAGAAATGGAATACTGCTTCCTGGCCTTCGCTTAATTCTAGTGCAGGTACATGCCTCTGCACTGAAGCAAAGCAGAGACGGAGTTCTGCTCTAGAATCTGTTCTGAAGGACTCAGGCGCCCAGGTCTGTTCATAAGcacaatgtaaatgtaaagaagTCCTTGAGGAAATATATCATTACAGCTTACATCACCCACCCACTTTTGTGGGTTAGCGCAATGCTAGCATGACACCGTAGGACCCCCGGCCCTTGTGTCCGGCCCGTCCGTTGCCATTGGAACAAGAGGCAAAGATGGCAAAGCCCTTCTACAGACTTCAGCGCTTCTTGCGGCGGACTCAGCTGCTGTTCATGTTCCTCGGCGTGGCCTACATCATGGCGGGAAGCGTGCTCTTGCTGCAGAGGTCTGGACTGGTGATATCTCAGCGTGGAAGTAGCAGCAGTTTCCTCATACCACCCTCGCTGCCTTCACCGCCCAGGGCTCTGGAGCCTCCTGCCATCAGGGCCAGGTATGGGATGATGGGTCCTCGGTTGAGCATAAAAGGACATCAAGGGAGCCAGCCGGAGGACTGGTCTGGACCACAGTGGCTGATGTCCCGCAACCAAGAGATCAGGCACCTGCGGCGGCGATGGTTCCATAGCCTTATGTCTGAGCAGGACACGACCAGAGCTGAGAGGGTCAGTCTGAAGAGGAAAGTCAGACACAAAGGGACGTACATCGGCTGTTTTCTGGACGATGCTAAGGACCGGTCGCTGAAGGGCATGGTGTTCTACGACTTCCGCAAAATGACCAGCACCCTGTGTCAGGACACCTGCACTGAAAGtgggTACCAGTTCGCTGGGCTGGAGTATGGGTCCGAATGTTACTGTGGCAACCGCATCACCAGTGCTCGGATGAAGGAGGAAGAGTGTAATTTGGACTGCAAGGGAGAAAAGGGCTCTATCTGTGGAGGCGTGGCCCGCCTGTCCGTCTACAAGGTGGAAGAGGTTCTTCCAGGCCAGAGGAGATACAGGAACGTCCGTTATCGTGGCTGCTTCAAGAGACCAgacaacaccacagcagccgCCCTGGTCCACATGGTCCAGCCCAACCTCACGTCTCAGAGCTGCATCGAGGCCTGCATGGACAAGGAGTTTCCTTTAGCCATGCTGAGCAGACCAGACTGCTTCTGTGGCTATTCCACTCCACACTTCTCCCTCCACGAGCCGGTGGATGAAGAACACTGCGCCCTGGTTAACAGCAGCCTGCCAACCTCAAAACCCAGTTCATATTTCCTCCAGGTCTACCAGACGCCCGTGCAGGacTCGAGATGCACAGAGAGGAAGTTCCTGCCTGAGAAGTCGAGTTGGCTGGTGGCTCTGTCTAGTTTCCCTGGAGCTGGGAACACCTGGGTGAGGCACCTGATTGAGCTAGCGACCGGATTTTACACAGGCAGCTACTACTTCGATGGAACCCTTTATAACAGAGGCTTCAAGGGCGAGAAAGATTACTGGAAAAGTGGACGGACCATCTGTGTGAAGACGCACGAGAGCAGCAAGAGGGACATAGAGATGTATGACTCAGCCATCTTGCTCATCAGGAACCCCTACCGCTCCCTCATGGCCGAGTTTAACCGCAAGTGTGCCGGCCACCTTGGCTACGCCTCTGACCAGCACTGGAAGAGCAAAGAGTGGCCGGAGTTCGTGGGCAGTTACGCGTCCTGGTGGGCGTCTCACGTGCTGGACTGGCTCCGCTTCGGCCGGAGGCTGCTGGTAGTTCATTACGAGGAGCTGCAGGAGTCGCTGGTACCCAGGCTGCGCTCCATCACCACCTTCCTCAACGCCACCGCCAGCGAGGAGCGCCTCCTGTGCGCCGAAAACAACAAGGATGGACACTTCAAGCGCTCCGGCTCCCATCGACCCTCTTTTGATCCCTTCACCCCAGACATGAGGAGGCTGATTGATGGTTATATCGGCGCTGTGGACCAGGCTCTTAGAGCCAGCAACCATACAGGCCTCCCTCAGGAATACCTCCCGAGATGATGAGGGTTCTGGATATAGACTGGACATAGAACTACagtacacatatacatacatacacacactgaaccTGGCCCTCCAGGTCGAGGGGATCAGGTATTGCTGCCAAGATCTCAACAATGTCCCATTCAAGAAttcaggagttggacaatgaaactgaaacaccattTTAGTATGGGAGGTTTcttggctaaattggagcagcctggtggccaattttcattaattgcacattattgcaccagtaagagcagagtgtga

Function

symbol description
wscd1 Predicted to enable sulfotransferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: WSC domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681094.1 True 2463 mRNA 0.55 9 9408099 9463585

Neighbor

gene id symbol gene type direction distance location
LOC103038411 NA coding upstream 251859 9154389 ~ 9156240 (+)
LOC111192952 NA coding upstream 467689 8939639 ~ 8940410 (+)
LOC103022607 chrna10a,LOC108432977,LOC107570043,LOC446029,LOC106567906 coding upstream 553898 8846840 ~ 8854201 (+)
LOC103022922 LOC103022922,LOC108277434 coding upstream 568720 8837372 ~ 8839379 (+)
LOC111194918 NA coding upstream 581739 8822490 ~ 8826360 (+)
LOC103038783 LOC108432999,LOC108278263,LOC106613073,LOC107589733,LOC107714181,LOC106581277,LOC105901427,LOC107666202 coding downstream 108935 9572520 ~ 9600832 (+)
LOC111192769 NA coding downstream 293251 9756836 ~ 9759186 (+)
LOC103041157 NA coding downstream 445967 9909552 ~ 9971315 (+)
LOC103041662 NA coding downstream 527988 9991573 ~ 10006311 (+)
LOC103042389 LOC108444298 coding downstream 710696 10174281 ~ 10192344 (+)
G2464 NA non-coding upstream 9099 9398594 ~ 9399000 (+)
LOC111195023 NA non-coding upstream 13511 9386268 ~ 9394588 (+)
G2453 NA non-coding upstream 91965 9315684 ~ 9316134 (+)
G2443 NA non-coding upstream 233343 9174336 ~ 9174756 (+)
G2400 nos2,LOC108432969 non-coding upstream 525507 8875852 ~ 8882592 (+)
G2466 NA non-coding downstream 511 9464096 ~ 9465472 (+)
G2481 NA non-coding downstream 21975 9485560 ~ 9489942 (+)
G2484 NA non-coding downstream 27035 9490620 ~ 9491298 (+)
G2485 NA non-coding downstream 27795 9491380 ~ 9491632 (+)
G2491 NA non-coding downstream 42125 9505710 ~ 9505977 (+)
lyrm9 lyrm9,LOC102789908 other upstream 450707 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 673147 8732723 ~ 8734952 (+)
G2304 NA other upstream 847621 8560066 ~ 8560478 (+)
LOC103030091 ptbp2,ptbp2b,LOC103030091,LOC108442283,LOC107594658,LOC107718150,LOC107570490,LOC108277987 other upstream 2853649 6513144 ~ 6554450 (+)
rwdd3 rwdd3 other upstream 2993305 6408846 ~ 6414794 (+)
G2509 NA other downstream 168280 9631865 ~ 9670125 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other downstream 170508 9634093 ~ 9743491 (+)
LOC103029949 slc46a1 other downstream 1794861 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 1824546 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 1941958 11405543 ~ 11424451 (+)

Expression


Co-expression Network