LOC103041662


Basic Information

Item Value
gene id LOC103041662
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 9991573 ~ 10006311 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682027.1
ACGCCTCTTATATCGACTCGTTTGTCGAAATACGGGTGTTATAAAACAGACTGGAAGGTAATTCTGCGTCTTGCACTTAAAAAGGAAATCTTCCCTCAGAAAGCTCTGTTGTAAGTTTCATACCGGAACCGACAGTACTTCTCGATACAGAACCGCCAGAACCCGGCTGTGAGCATGGCGTCTGTGGTGCATGAGAAAGTGAAGAGTTATTACAGTTCTCTGGAGACTGGAGAAGATTTGCAGACCAGTGCTGCTTGCCCAGCGCCCTCTCGTCTTCTGTCCCCGAGCGCCAAAACAGCCCTTCAACAAGTCCATCCAGATGTTTGTAAGAGGTTCCTTGGTTGTGGTGTTGTGGTTCCTGAGAAACTGAAGGGGTGTTCGATTCTAGATTTGGGAAGTGGATCAGGCAGGGACTGCTACATGCTCAGCAAACTGGTGGGAGAAGATGGTCATGTGACTGGCATTGACATGACATCAGAACTGGTAGAAGCATCAAGGAAATATATCCAGTACCACCAGGAGCTATTTGGTTATGCCAAGCCAAACACTGTGTTTCTTCAAGGGTACATGGAGAAGCTCGGTGAAGCAGGGATCAAAGACAGCTCTGTGGATGTGATTGTATCAAACTGTGTGATATGCCTGTGTCCAGACAAGAGAGCTGTCCTGAGAGAAGCTTACAAGGTACTCAAGGAAGGTGGTGAACTTTACTTCAGTGACATGTACGCAAATAAGGTGGTTCCAGACTCTTTCAGAGAGGATGCAGTTCTTTGGGGTGAAGGAATGGCTGGTGGCCTCTACTGGCAAGATCTCATATCCCTCGTGAAGGAACTGGGCTTCAGCACGCCTTACCTGGTTGCAGCCAGTCATATTCAAATCCACAATCAAGAGCTTCAAAAGAAAGCAGgtGATATTAAATATGCATCCGGGACCTACCGTATTTTTAAACTGCCCAAACACTCCATTCGGTCCAAAGCACTGGTTACATACAAAGGGACTGTGCCAGACTGTGAAGAACATTTTGCATTTGATGCTTCATATTCCTTTAAGACAAACCTGACAATGGATGTAGATGCAGAAATGGCCGCAATCCTTCAGTGCACACGTTTCTCCTCAGACTTCACCGTGCAGATGACGGATGAACCTGATCCCAGCCTTGACTCTACTCGACAGTATCACCTCCTGAACCCGTTCCAGCTGGCAGACAGACTGGGCTCCTGCATAAAGCAGTGTTCGAAGACGGGCAGCACGGCTGCCTGTGGTACCAAGACGACCAGCGGGAACTGTGGGTAAtgtgggaaaagtacaccatgcATGGGTAAAACGCCCAGATCTACATTTTGACTGACGTTAGACTGAATAAAGCAGAACAGCAGCTCACTGAGCCCATAAGATATTCAGGTTAGCTTATATACTGTGAATTTCTCTCACGCCCTTTTTGTTTAATCTCACTAACAGCCATTTGTCATTGTCACTTCTAAACTTTGTAGAGCTTTAAttgttatagattttttttctaattctagAAACTTGATTAACTGGAATATTACATTcatttgatacaatgtaaaaaataattgccAGATTTGCGTTATGTTGCAGTGACTTCAGTAAAATGATTTCAGTTAATGAAACAACTttctaataatgttgtaattattaaagaaaaatatgggCTGAGGCGCTAGGAGTATTAGAATTGTGAATCTTTCCAACAGGTGCAGGTTCTGAAGCTGGGCAAAAatttgaaatatgaaaaaatatataagtcaaaagaaaaatggctaaaaaagcCTTTA
>XM_022682063.1
CACGCCTCTTATATCGACTCGTTTGTCGAAATACGGGTGTTATAAAACAGACTGGAAGGTAATTCTGCGTCTTGCACTTAAAAAGGAAATCTTCCCTCAGAAAGCTCTGTTGTAAGTTTCATACCGGAACCGACAGTACTTCTCGATACAGAACCGCCAGAACCCGGCTGTGAGCATGGCGTCTGTGGTGCATGAGAAAGTGAAGAGTTATTACAGTTCTCTGGAGACTGGAGAAGATTTGCAGACCAGTGCTGCTTGCCCAGCGCCCTCTCGTCTTCTGTCCCCGAGCGCCAAAACAGCCCTTCAACAAGTCCATCCAGATGTTTGTAAGAGGTTCCTTGGTTGTGGTGTTGTGGTTCCTGAGAAACTGAAGGGGTGTTCGATTCTAGATTTGGGAAGTGGATCAGGCAGGGACTGCTACATGCTCAGCAAACTGGTGGGAGAAGATGGTCATGTGACTGGCATTGACATGACATCAGAACTGGTAGAAGCATCAAGGAAATATATCCAGTACCACCAGGAGCTATTTGGTTATGCCAAGCCAAACACTGTGTTTCTTCAAGGGTACATGGAGAAGCTCGGTGAAGCAGGGATCAAAGACAGCTCTGTGGATGTGATTGTATCAAACTGTGTGATATGCCTGTGTCCAGACAAGAGAGCTGTCCTGAGAGAAGCTTACAAGGAAGGTGGTGAACTTTACTTCAGTGACATGTACGCAAATAAGGTGGTTCCAGACTCTTTCAGAGAGGATGCAGTTCTTTGGGGTGAAGGAATGGCTGGTGGCCTCTACTGGCAAGATCTCATATCCCTCGTGAAGGAACTGGGCTTCAGCACGCCTTACCTGGTTGCAGCCAGTCATATTCAAATCCACAATCAAGAGCTTCAAAAGAAAGCAGgtGATATTAAATATGCATCCGGGACCTACCGTATTTTTAAACTGCCCAAACACTCCATTCGGTCCAAAGCACTGGTTACATACAAAGGGACTGTGCCAGACTGTGAAGAACATTTTGCATTTGATGCTTCATATTCCTTTAAGACAAACCTGACAATGGATGTAGATGCAGAAATGGCCGCAATCCTTCAGTGCACACGTTTCTCCTCAGACTTCACCGTGCAGATGACGGATGAACCTGATCCCAGCCTTGACTCTACTCGACAGTATCACCTCCTGAACCCGTTCCAGCTGGCAGACAGACTGGGCTCCTGCATAAAGCAGTGTTCGAAGACGGGCAGCACGGCTGCCTGTGGTACCAAGACGACCAGCGGGAACTGTGGGTAAtgtgggaaaagtacaccatgcATGGGTAAAACGCCCAGATCTACATTTTGACTGACGTTAGACTGAATAAAGCAGAACAGCAGCTCACTGAGCCCATAAGATATTCAGGTTAGCTTATATACTGTGAATTTCTCTCACGCCCTTTTTGTTTAATCTCACTAACAGCCATTTGTCATTGTCACTTCTAAACTTTGTAGAGCTTTAAttgttatagattttttttctaattctagAAACTTGATTAACTGGAATATTACATTcatttgatacaatgtaaaaaataattgccAGATTTGCGTTATGTTGCAGTGACTTCAGTAAAATGATTTCAGTTAATGAAACAACTttctaataatgttgtaattattaaagaaaaatatgggCTGAGGCGCTAGGAGTATTAGAATTGTGAATCTTTCCAACAGGTGCAGGTTCTGAAGCTGGGCAAAAatttgaaatatgaaaaaatatataagtcaaaagaaaaatggctaaaaaagcCTTTA

Function

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0030791 arsenite methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682027.1 True 1796 mRNA 0.44 11 9991574 10006311
XM_022682063.1 False 1788 mRNA 0.44 11 9991573 10006311

Neighbor

gene id symbol gene type direction distance location
LOC103041157 NA coding upstream 20258 9909552 ~ 9971315 (+)
LOC111192769 NA coding upstream 232387 9756836 ~ 9759186 (+)
LOC103038783 LOC108432999,LOC108278263,LOC106613073,LOC107589733,LOC107714181,LOC106581277,LOC105901427,LOC107666202 coding upstream 390741 9572520 ~ 9600832 (+)
LOC103045140 wscd1,LOC108432998,LOC107756514,LOC107682602,LOC107666180 coding upstream 527988 9408099 ~ 9463585 (+)
LOC103038411 NA coding upstream 835333 9154389 ~ 9156240 (+)
LOC103042389 LOC108444298 coding downstream 167970 10174281 ~ 10192344 (+)
LOC103043114 NA coding downstream 220459 10226770 ~ 10239820 (+)
LOC103043417 NA coding downstream 480175 10486486 ~ 10499361 (+)
LOC103042748 LOC103042748,LOC108426910,LOC105898201,LOC104922853 coding downstream 1079144 11085455 ~ 11089687 (+)
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding downstream 1085846 11092157 ~ 11116667 (+)
G2567 NA non-coding upstream 11617 9979674 ~ 9979956 (+)
G2565 NA non-coding upstream 31123 9959891 ~ 9960450 (+)
G2563 NA non-coding upstream 73570 9916144 ~ 9918003 (+)
G2561 NA non-coding upstream 135714 9854739 ~ 9855859 (+)
G2560 NA non-coding upstream 137409 9853932 ~ 9854164 (+)
G2592 NA non-coding downstream 61208 10067519 ~ 10068311 (+)
LOC111195257 NA non-coding downstream 97926 10104237 ~ 10120596 (+)
G2577 NA non-coding downstream 114319 10120630 ~ 10123738 (+)
G2627 NA non-coding downstream 127597 10133908 ~ 10156173 (+)
G2644 NA non-coding downstream 206871 10213182 ~ 10213417 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 248082 9634093 ~ 9743491 (+)
G2509 NA other upstream 321448 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 1034181 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 1256621 8732723 ~ 8734952 (+)
G2304 NA other upstream 1431095 8560066 ~ 8560478 (+)
LOC103029949 slc46a1 other downstream 1252135 11258446 ~ 11279177 (+)
G2910 sarm1,LOC107756984 other downstream 1281820 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 1399232 11405543 ~ 11424451 (+)
G3096 NA other downstream 1918139 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 2976314 12982625 ~ 12984269 (+)

Expression


Co-expression Network