LOC111195540 (cdkl1,LOC108424097)


Basic Information

Item Value
gene id LOC111195540
gene name cdkl1,LOC108424097
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 11257741 ~ 11258661 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683375.1
GTCTAGTGATGGATCCTGCTGGAAGACTGTCATGTGAGGAGTTATTGGAGTTGACATACTTTCAGGAAGAGGGTGGAGCAGGGTGGGGCAGAGAGGTGGAACGACCCGGCAGACGTCATGAGAGAGGCACCAGGCGCCGAATGCCCGGGATGCAGTATTTGCCTCAGCTGCCCAGCAGCAACATCTCCCCAGCACCTGAGCTGAAGAACAAGCACAAACCCAAATACGACCACCATCTGCCCAACATCTGACTGACGACTGAAGATGACAAAGTAcatgtaaatatgaaaatagacatattGTAGATACAGTATGAGCAGCATTGAGAATGGCGTCCCAAGAAGGTTCACATGGACTTGGTTGGTTCTATGCAGCACATACATATTATAAAAGGGGCTACATgttattatgtaaaatattcTTACATAAAATTGTGTACTCTCATTTCAGAATCATTCTGAACTGTGCTTTAGACGAGttgcaaaaacatgaaattgtTATAATACTGTTACAGAATCCTAACATGCTGAATTGTTGTGCCAAA

Function

symbol description
cdkl1 Enables protein kinase activity. Acts upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including hypochord; nervous system; pleuroperitoneal region; spinal cord neural keel; and spinal cord neural tube. Orthologous to human CDKL1 (cyclin dependent kinase like 1).

NR:

description
PREDICTED: cyclin-dependent kinase-like 1 isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0005524 ATP binding molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683375.1 True 544 mRNA 0.44 2 11257741 11258661

Neighbor

gene id symbol gene type direction distance location
unc119 unc119,LOC103043060,LOC107704800,LOC107548572,LOC107713212 coding upstream 141074 11092157 ~ 11116667 (+)
LOC103042748 LOC103042748,LOC108426910,LOC105898201,LOC104922853 coding upstream 168054 11085455 ~ 11089687 (+)
LOC103043417 NA coding upstream 758380 10486486 ~ 10499361 (+)
LOC103043114 NA coding upstream 1017921 10226770 ~ 10239820 (+)
LOC103042389 LOC108444298 coding upstream 1065397 10174281 ~ 10192344 (+)
ankmy2 ankmy2,ankmy2a,LOC107582236,LOC107586949,LOC107704763,LOC107683262,LOC107730870 coding downstream 37908 11296569 ~ 11303882 (+)
sostdc1 sostdc1 coding downstream 56311 11314972 ~ 11319136 (+)
ispd ispd coding downstream 61702 11320363 ~ 11364325 (+)
agmo agmo coding downstream 173302 11431963 ~ 11495096 (+)
etv1 etv1,LOC107683220,LOC107730861 coding downstream 246710 11505371 ~ 11610772 (+)
G2896 NA non-coding upstream 96111 11161415 ~ 11161630 (+)
G2860 NA non-coding upstream 186797 11070035 ~ 11070944 (+)
G2856 NA non-coding upstream 259642 10997768 ~ 10998099 (+)
G2854 NA non-coding upstream 262932 10994593 ~ 10994809 (+)
G2844 NA non-coding upstream 365621 10837441 ~ 10892120 (+)
G2902 NA non-coding downstream 10244 11268905 ~ 11269166 (+)
G2907 NA non-coding downstream 22595 11281256 ~ 11281961 (+)
G2918 NA non-coding downstream 53720 11312381 ~ 11312608 (+)
G2970 NA non-coding downstream 265984 11524645 ~ 11536611 (+)
G2969 NA non-coding downstream 316290 11574951 ~ 11612299 (+)
LOC103039705 gdpd5b,gdpd5,LOC103039705,LOC108433002,LOC108277648,LOC107666190,LOC107682503 other upstream 1514250 9634093 ~ 9743491 (+)
G2509 NA other upstream 1587616 9631865 ~ 9670125 (+)
lyrm9 lyrm9,LOC102789908 other upstream 2300349 8944461 ~ 8957392 (+)
G2358 LOC108432992,LOC101077340,LOC100691215,LOC101465674 other upstream 2522789 8732723 ~ 8734952 (+)
G2304 NA other upstream 2697263 8560066 ~ 8560478 (+)
G2910 sarm1,LOC107756984 other downstream 29470 11288131 ~ 11288846 (+)
meox2 meox2,LOC103024054,LOC107683451,LOC107730826,LOC107582293,LOC107588208,LOC107704718 other downstream 146882 11405543 ~ 11424451 (+)
G3096 NA other downstream 665789 11924450 ~ 11927250 (+)
G3313 sept5b,LOC108425237 other downstream 1723964 12982625 ~ 12984269 (+)
LOC103035587 NA other downstream 2959146 14217807 ~ 14244380 (+)

Expression


Co-expression Network